Wall clock time and date at job start Tue Mar 31 2020 16:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47617 * 2 1 4 4 C 1.38257 * 119.99966 * 264.99813 * 3 2 1 5 5 C 1.38212 * 120.00115 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99943 * 359.96125 * 5 4 3 7 7 C 1.38208 * 119.99672 * 0.27349 * 6 5 4 8 8 C 1.38210 * 120.00119 * 85.02011 * 3 2 1 9 9 C 1.50701 * 119.99918 * 0.02562 * 8 3 2 10 10 C 1.50703 * 109.46597 * 85.00311 * 9 8 3 11 11 O 1.21277 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00109 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.49605 * 34.93455 * 13 12 10 15 15 C 1.53043 * 109.49639 * 154.99814 * 13 12 10 16 16 C 1.53046 * 109.53771 * 181.31725 * 15 13 12 17 17 C 1.53192 * 109.31202 * 298.63842 * 16 15 13 18 18 H 1.08999 * 109.58242 * 294.70086 * 17 16 15 19 19 C 1.52994 * 109.58800 * 174.42242 * 17 16 15 20 20 N 1.46926 * 108.77770 * 54.63201 * 17 16 15 21 21 C 1.36938 * 120.63082 * 126.41057 * 20 17 16 22 22 H 1.07996 * 119.99830 * 330.85886 * 21 20 17 23 23 C 1.38811 * 119.99982 * 150.85369 * 21 20 17 24 24 N 1.31608 * 120.00126 * 160.75138 * 23 21 20 25 25 Si 1.86800 * 119.99930 * 340.75180 * 23 21 20 26 26 H 1.48499 * 109.47186 * 92.27896 * 25 23 21 27 27 H 1.48498 * 109.47181 * 212.27868 * 25 23 21 28 28 H 1.48502 * 109.47484 * 332.28103 * 25 23 21 29 29 C 1.46923 * 118.73907 * 306.39379 * 20 17 16 30 30 H 1.09004 * 109.47161 * 300.00467 * 1 2 3 31 31 H 1.09005 * 109.46894 * 59.99959 * 1 2 3 32 32 H 1.09001 * 109.47615 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47161 * 239.99533 * 2 1 3 34 34 H 1.09005 * 109.46894 * 120.00041 * 2 1 3 35 35 H 1.07999 * 120.00383 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00255 * 179.97438 * 5 4 3 37 37 H 1.08005 * 119.99872 * 180.02562 * 6 5 4 38 38 H 1.08007 * 119.99700 * 179.72895 * 7 6 5 39 39 H 1.09002 * 109.46992 * 204.99938 * 9 8 3 40 40 H 1.09000 * 109.47411 * 325.00430 * 9 8 3 41 41 H 0.97002 * 119.99733 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.45915 * 301.33562 * 15 13 12 43 43 H 1.09000 * 109.45992 * 61.30987 * 15 13 12 44 44 H 1.08999 * 109.49504 * 58.58891 * 16 15 13 45 45 H 1.09001 * 109.49564 * 178.64962 * 16 15 13 46 46 H 1.09004 * 109.47451 * 59.99439 * 19 17 16 47 47 H 1.08992 * 109.47432 * 179.97438 * 19 17 16 48 48 H 1.09000 * 109.46912 * 299.99820 * 19 17 16 49 49 H 0.97002 * 120.00263 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58820 * 293.82026 * 29 20 17 51 51 H 1.09001 * 109.59063 * 173.39355 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3613 2.0376 -1.1928 5 6 2.8226 3.3405 -1.1928 6 6 2.9544 4.0272 0.0000 7 6 2.6302 3.4088 1.1928 8 6 2.1648 2.1069 1.1924 9 6 1.8074 1.4341 2.4926 10 6 2.9872 0.6374 2.9869 11 8 4.0168 0.6175 2.3461 12 7 2.8980 -0.0539 4.1404 13 6 4.0447 -0.8289 4.6207 14 1 4.9680 -0.3098 4.3634 15 6 3.9540 -0.9871 6.1402 16 6 5.1686 -1.7683 6.6468 17 6 5.1730 -3.1638 6.0148 18 1 4.3072 -3.7261 6.3647 19 6 6.4554 -3.9003 6.4067 20 7 5.1137 -3.0214 4.5536 21 6 6.0446 -3.6302 3.7549 22 1 7.0428 -3.8070 4.1274 23 6 5.7053 -4.0201 2.4667 24 7 6.6489 -4.2472 1.5778 25 14 3.9093 -4.2224 1.9946 26 1 3.4008 -2.9490 1.4245 27 1 3.7818 -5.3030 0.9840 28 1 3.1174 -4.5761 3.2001 29 6 4.0364 -2.2137 3.9657 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2578 1.5015 -2.1246 36 1 3.0799 3.8223 -2.1245 37 1 3.3145 5.0454 0.0000 38 1 2.7374 3.9437 2.1249 39 1 1.5438 2.1900 3.2324 40 1 0.9591 0.7678 2.3358 41 1 2.0744 -0.0382 4.6527 42 1 3.9350 -0.0024 6.6073 43 1 3.0425 -1.5276 6.3952 44 1 6.0815 -1.2409 6.3705 45 1 5.1155 -1.8599 7.7317 46 1 6.5037 -3.9938 7.4917 47 1 6.4564 -4.8929 5.9565 48 1 7.3197 -3.3391 6.0516 49 1 6.4118 -4.5200 0.6776 50 1 3.0765 -2.6976 4.1465 51 1 4.2001 -2.1114 2.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071608266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:01 Heat of formation + Delta-G solvation = -26.071628 kcal Electronic energy + Delta-G solvation = -29606.120641 eV Core-core repulsion = 25890.251413 eV Total energy + Delta-G solvation = -3715.869228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41225 -40.28530 -39.22172 -36.07195 -35.27379 -34.67139 -33.65483 -32.60978 -32.18520 -30.43110 -28.82538 -27.64913 -26.47647 -24.83033 -24.45597 -23.20458 -22.31308 -21.77729 -21.29656 -20.76740 -18.54608 -18.17055 -17.67828 -17.29586 -17.11398 -16.58380 -16.41812 -15.94617 -15.69520 -15.34202 -15.19779 -14.96081 -14.72312 -14.65636 -14.43141 -14.37827 -14.06379 -13.93495 -13.71860 -13.44859 -13.12817 -12.99711 -12.86769 -12.74972 -12.68900 -12.53936 -12.50907 -12.22183 -12.07945 -11.79052 -11.77215 -11.70404 -11.61224 -11.41841 -11.32265 -10.89910 -10.77289 -10.12297 -9.71312 -9.50537 -8.87762 -8.18555 -5.49995 0.40140 0.48983 1.23512 1.27756 1.37856 1.66515 2.18497 2.38638 2.86461 3.07599 3.33683 3.62137 3.78975 3.81228 3.93444 4.01561 4.05378 4.06928 4.14115 4.24560 4.26370 4.31828 4.39113 4.40892 4.48232 4.59017 4.60665 4.65369 4.66875 4.72157 4.83099 4.86691 4.95470 4.97930 4.99594 4.99786 5.10006 5.13215 5.16349 5.19614 5.26735 5.30589 5.48517 5.50041 5.56078 5.59734 5.63969 5.71940 5.89344 6.12474 6.16192 6.62330 6.91852 7.35605 7.63778 8.02414 9.01128 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.004079 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.927320 B = 6863.084087 C = 7839.464032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.081 4.081 9 C -0.096 4.096 10 C 0.503 3.497 11 O -0.581 6.581 12 N -0.713 5.713 13 C 0.137 3.863 14 H 0.049 0.951 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.157 3.843 18 H 0.047 0.953 19 C -0.132 4.132 20 N -0.614 5.614 21 C -0.236 4.236 22 H 0.066 0.934 23 C -0.038 4.038 24 N -0.959 5.959 25 Si 0.942 3.058 26 H -0.295 1.295 27 H -0.312 1.312 28 H -0.253 1.253 29 C 0.121 3.879 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.418 0.582 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.257 0.743 50 H 0.034 0.966 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 15.896 6.489 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.082 4.082 4 C -0.156 4.156 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.133 4.133 8 C -0.081 4.081 9 C -0.136 4.136 10 C 0.291 3.709 11 O -0.459 6.459 12 N -0.366 5.366 13 C 0.030 3.970 14 H 0.068 0.932 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.053 3.947 18 H 0.065 0.935 19 C -0.189 4.189 20 N -0.340 5.340 21 C -0.366 4.366 22 H 0.084 0.916 23 C -0.232 4.232 24 N -0.605 5.605 25 Si 0.773 3.227 26 H -0.223 1.223 27 H -0.241 1.241 28 H -0.177 1.177 29 C -0.005 4.005 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.138 0.862 41 H 0.256 0.744 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.052 0.948 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.292 15.807 5.939 23.464 hybrid contribution -0.253 -0.690 -1.099 1.322 sum -16.545 15.116 4.840 22.928 Atomic orbital electron populations 1.21720 0.91995 1.02487 1.03187 1.20584 0.98284 0.92749 1.01514 1.19874 0.99020 0.95609 0.93663 1.21236 1.00646 0.96096 0.97595 1.21421 0.99056 0.94427 0.99331 1.21417 1.00311 1.01103 0.92274 1.21282 0.98303 0.94357 0.99332 1.19367 1.00617 0.94661 0.93485 1.20808 0.95989 1.00614 0.96142 1.21298 0.89830 0.79369 0.80449 1.90783 1.33677 1.64407 1.57078 1.45942 1.17274 1.49185 1.24238 1.21310 0.88827 0.90728 0.96101 0.93224 1.21668 0.99826 1.01931 0.90967 1.21977 0.97579 0.95362 1.01127 1.20884 0.97164 0.95307 0.81371 0.93534 1.21760 0.96798 0.99538 1.00847 1.44577 1.31196 1.55425 1.02798 1.18911 0.92130 1.30776 0.94822 0.91642 1.25918 1.00231 1.00101 0.96925 1.69947 1.33738 1.52862 1.03993 0.85952 0.83687 0.75599 0.77498 1.22319 1.24082 1.17710 1.21613 0.91007 0.91493 0.96392 0.91007 0.91511 0.91854 0.92299 0.93762 0.85539 0.84020 0.83723 0.84306 0.84204 0.86200 0.74398 0.89101 0.89555 0.93537 0.87885 0.89653 0.94349 0.94566 0.93417 0.94836 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 71.98 0.70 -2.07 16 2 C -0.09 -2.71 5.38 29.84 0.16 -2.55 16 3 C -0.08 -2.35 5.13 -19.87 -0.10 -2.46 16 4 C -0.14 -3.67 9.68 22.27 0.22 -3.46 16 5 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 6 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 7 C -0.11 -2.73 9.68 22.27 0.22 -2.51 16 8 C -0.08 -2.15 4.37 -19.87 -0.09 -2.24 16 9 C -0.10 -2.10 5.16 29.10 0.15 -1.95 16 10 C 0.50 16.20 7.00 87.66 0.61 16.82 16 11 O -0.58 -26.47 15.70 -3.02 -0.05 -26.52 16 12 N -0.71 -19.61 5.08 -442.16 -2.25 -21.86 16 13 C 0.14 4.82 2.60 45.07 0.12 4.93 16 14 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 15 C -0.11 -2.64 5.35 30.62 0.16 -2.47 16 16 C -0.12 -3.40 5.37 30.67 0.16 -3.24 16 17 C 0.16 5.74 3.50 44.97 0.16 5.89 16 18 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.13 -4.73 7.94 71.98 0.57 -4.15 16 20 N -0.61 -29.53 2.75 -675.25 -1.86 -31.38 16 21 C -0.24 -13.91 9.05 84.03 0.76 -13.15 16 22 H 0.07 4.11 6.39 -2.91 -0.02 4.09 16 23 C -0.04 -2.35 5.24 84.86 0.44 -1.90 16 24 N -0.96 -64.44 13.97 21.65 0.30 -64.13 16 25 Si 0.94 50.68 24.34 68.60 1.67 52.35 16 26 H -0.30 -16.09 6.63 99.48 0.66 -15.43 16 27 H -0.31 -16.89 7.11 99.48 0.71 -16.18 16 28 H -0.25 -12.54 6.63 99.48 0.66 -11.88 16 29 C 0.12 5.44 3.77 86.36 0.33 5.77 16 30 H 0.07 1.20 6.80 -2.39 -0.02 1.19 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.79 8.05 -2.39 -0.02 1.77 16 34 H 0.04 1.51 6.42 -2.38 -0.02 1.50 16 35 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.14 1.87 8.05 -2.39 -0.02 1.85 16 40 H 0.12 2.17 5.63 -2.39 -0.01 2.16 16 41 H 0.42 7.26 8.60 -92.71 -0.80 6.47 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 48 H 0.04 1.42 7.40 -2.39 -0.02 1.41 16 49 H 0.26 16.61 8.31 -92.71 -0.77 15.84 16 50 H 0.03 1.42 7.03 -2.39 -0.02 1.40 16 51 H 0.03 1.73 4.62 -2.39 -0.01 1.71 16 Total: -1.00 -85.42 391.17 2.87 -82.56 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.02 Total: 23.14 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.02 Total: -14.14 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.80 Total: -117.37 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.67 Total: 52.35 kcal Total: -85.42 2.87 -82.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.486 kcal (2) G-P(sol) polarization free energy of solvation -85.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds