Wall clock time and date at job start Tue Mar 31 2020 16:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47113 * 2 1 4 4 C 1.38247 * 120.00401 * 89.99804 * 3 2 1 5 5 C 1.38220 * 120.00148 * 180.02562 * 4 3 2 6 6 C 1.38248 * 119.99620 * 0.02562 * 5 4 3 7 7 C 1.38214 * 120.00689 * 359.95722 * 6 5 4 8 8 C 1.50691 * 120.00176 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47649 * 89.99664 * 8 7 6 10 10 O 1.21278 * 119.99557 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99838 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.52572 * 34.91648 * 12 11 9 14 14 C 1.53035 * 109.49935 * 155.00263 * 12 11 9 15 15 C 1.53042 * 109.53958 * 58.58379 * 14 12 11 16 16 C 1.53194 * 109.31002 * 61.36901 * 15 14 12 17 17 H 1.08994 * 109.59161 * 65.15236 * 16 15 14 18 18 C 1.52998 * 109.58783 * 185.58055 * 16 15 14 19 19 N 1.46930 * 108.77257 * 305.36138 * 16 15 14 20 20 C 1.36936 * 120.63158 * 233.58673 * 19 16 15 21 21 H 1.07993 * 120.00038 * 29.03312 * 20 19 16 22 22 C 1.38812 * 119.99785 * 209.03836 * 20 19 16 23 23 N 1.31617 * 120.00378 * 15.01823 * 22 20 19 24 24 Si 1.86807 * 119.99569 * 195.01873 * 22 20 19 25 25 H 1.48498 * 109.47223 * 60.00170 * 24 22 20 26 26 H 1.48507 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47060 * 299.99503 * 24 22 20 28 28 C 1.46931 * 118.73718 * 53.61489 * 19 16 15 29 29 C 1.38217 * 119.99744 * 270.21098 * 3 2 1 30 30 H 1.09002 * 109.46931 * 300.00142 * 1 2 3 31 31 H 1.08992 * 109.47177 * 60.00494 * 1 2 3 32 32 H 1.08999 * 109.46622 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47390 * 239.99951 * 2 1 3 34 34 H 1.09000 * 109.47312 * 119.99862 * 2 1 3 35 35 H 1.08000 * 119.99856 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99616 * 179.97438 * 5 4 3 37 37 H 1.08003 * 119.99956 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47247 * 329.99240 * 8 7 6 39 39 H 1.09010 * 109.47203 * 209.99882 * 8 7 6 40 40 H 0.97003 * 120.00349 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.45945 * 298.56783 * 14 12 11 42 42 H 1.09003 * 109.46106 * 178.60643 * 14 12 11 43 43 H 1.08999 * 109.49673 * 181.31508 * 15 14 12 44 44 H 1.09000 * 109.50067 * 301.41655 * 15 14 12 45 45 H 1.08998 * 109.47544 * 59.99381 * 18 16 15 46 46 H 1.08996 * 109.47299 * 180.02562 * 18 16 15 47 47 H 1.09001 * 109.46666 * 299.99842 * 18 16 15 48 48 H 0.96999 * 120.00020 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58540 * 186.59748 * 28 19 16 50 50 H 1.09004 * 109.70208 * 66.24560 * 28 19 16 51 51 H 1.08011 * 120.00090 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1972 5 6 2.7230 3.3760 1.1971 6 6 2.9524 4.0279 -0.0002 7 6 2.7224 3.3762 -1.1972 8 6 2.9730 4.0867 -2.5022 9 6 4.3965 3.8510 -2.9374 10 8 5.1349 3.1731 -2.2546 11 7 4.8488 4.3935 -4.0852 12 6 6.2328 4.1648 -4.5080 13 1 6.5407 3.1600 -4.2187 14 6 6.3336 4.3124 -6.0278 15 6 5.8703 5.7121 -6.4380 16 6 6.7824 6.7580 -5.7891 17 1 7.7916 6.6617 -6.1894 18 6 6.2436 8.1600 -6.0806 19 7 6.8044 6.5309 -4.3377 20 6 6.5101 7.5468 -3.4679 21 1 5.8373 8.3365 -3.7679 22 6 7.0766 7.5616 -2.2007 23 7 8.1064 6.7876 -1.9312 24 14 6.3772 8.6800 -0.8780 25 1 4.9561 8.3267 -0.6316 26 1 7.1538 8.5092 0.3762 27 1 6.4654 10.0929 -1.3270 28 6 7.1489 5.1931 -3.8371 29 6 2.2586 2.0738 -1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5637 2.1325 36 1 2.9026 3.8852 2.1325 37 1 3.3116 5.0464 -0.0003 38 1 2.8053 5.1559 -2.3719 39 1 2.2924 3.7021 -3.2619 40 1 4.2581 4.9354 -4.6315 41 1 5.7014 3.5655 -6.5079 42 1 7.3681 4.1665 -6.3390 43 1 5.9204 5.8086 -7.5226 44 1 4.8441 5.8678 -6.1053 45 1 5.2370 8.2544 -5.6734 46 1 6.8941 8.9026 -5.6186 47 1 6.2162 8.3218 -7.1582 48 1 8.5020 6.7977 -1.0456 49 1 7.0069 5.1594 -2.7570 50 1 8.1882 4.9676 -4.0762 51 1 2.0749 1.5659 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071623167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:04 Heat of formation + Delta-G solvation = -26.464877 kcal Electronic energy + Delta-G solvation = -29300.341103 eV Core-core repulsion = 25584.454822 eV Total energy + Delta-G solvation = -3715.886280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.17976 -40.21701 -39.00310 -35.75179 -35.28650 -34.48328 -33.44474 -32.09420 -31.70433 -30.36634 -28.65214 -27.67981 -26.62347 -24.78600 -23.89367 -23.27592 -22.33316 -21.88832 -20.90326 -20.33038 -18.33411 -18.03575 -17.41526 -17.13045 -16.80914 -16.46575 -15.89770 -15.85683 -15.60821 -15.40401 -14.94911 -14.71270 -14.66917 -14.51065 -14.33192 -14.13929 -13.93444 -13.75896 -13.61482 -13.00550 -12.95311 -12.88567 -12.76202 -12.60546 -12.57836 -12.54173 -12.40716 -12.14730 -12.11648 -12.06239 -11.68226 -11.63691 -11.56317 -11.20028 -11.03740 -10.80447 -10.50132 -9.87010 -9.68515 -9.50078 -8.56254 -7.80546 -5.25968 0.42168 0.49677 1.40842 1.43284 1.48941 1.82923 2.42533 2.51056 2.93100 3.35247 3.64688 3.69698 3.82867 3.98190 4.01805 4.11706 4.15845 4.21775 4.22550 4.31857 4.37771 4.52018 4.52994 4.58003 4.59299 4.67249 4.69058 4.75796 4.80026 4.84612 4.98108 5.02074 5.06425 5.10811 5.12267 5.13487 5.18992 5.23323 5.28837 5.34941 5.41107 5.56068 5.58251 5.63818 5.68160 5.71718 5.72094 5.77125 5.80723 6.13701 6.45193 6.78684 7.19930 7.49212 7.94782 8.45550 9.24264 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012776 B = 0.003781 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.140196 B = 7403.487896 C = 8828.752952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.088 4.088 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.070 4.070 8 C -0.096 4.096 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.693 5.693 12 C 0.130 3.870 13 H 0.059 0.941 14 C -0.110 4.110 15 C -0.118 4.118 16 C 0.152 3.848 17 H 0.010 0.990 18 C -0.128 4.128 19 N -0.593 5.593 20 C -0.236 4.236 21 H 0.078 0.922 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.949 3.051 25 H -0.278 1.278 26 H -0.306 1.306 27 H -0.271 1.271 28 C 0.173 3.827 29 C -0.114 4.114 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.408 0.592 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.241 0.759 49 H 0.047 0.953 50 H -0.011 1.011 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 -9.785 -4.642 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.070 4.070 8 C -0.135 4.135 9 C 0.296 3.704 10 O -0.469 6.469 11 N -0.344 5.344 12 C 0.023 3.977 13 H 0.077 0.923 14 C -0.148 4.148 15 C -0.156 4.156 16 C 0.047 3.953 17 H 0.028 0.972 18 C -0.185 4.185 19 N -0.317 5.317 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.249 4.249 23 N -0.585 5.585 24 Si 0.778 3.222 25 H -0.204 1.204 26 H -0.233 1.233 27 H -0.197 1.197 28 C 0.046 3.954 29 C -0.132 4.132 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.094 0.906 48 H 0.050 0.950 49 H 0.065 0.935 50 H 0.007 0.993 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.233 -10.236 -4.060 19.615 hybrid contribution 0.612 1.190 1.156 1.768 sum -15.621 -9.046 -2.904 18.284 Atomic orbital electron populations 1.21713 0.93553 1.02513 1.02050 1.20577 0.97020 0.90946 1.03416 1.20186 0.98571 0.97312 0.92738 1.21261 1.00218 0.94537 0.98558 1.21302 0.99532 0.95789 0.97848 1.21136 1.00765 1.00194 0.93445 1.19465 0.98576 0.95096 0.93859 1.20703 0.93204 1.03091 0.96513 1.20985 0.90244 0.78714 0.80484 1.90676 1.59877 1.41930 1.54419 1.45737 1.12864 1.52187 1.23586 1.21397 0.82520 0.97753 0.96035 0.92307 1.21650 1.02421 0.98463 0.92216 1.21946 0.99392 0.93679 1.00629 1.20789 0.95720 0.95024 0.83772 0.97230 1.21717 1.00508 0.95626 1.00655 1.44244 1.80729 1.05982 1.00737 1.19405 1.19262 1.03763 0.94243 0.90403 1.25737 0.96757 1.00735 1.01719 1.70166 1.23806 1.44140 1.20428 0.85611 0.77862 0.79614 0.79102 1.20412 1.23328 1.19705 1.20832 0.92428 0.84199 0.97986 1.21040 1.00013 0.93491 0.98644 0.92696 0.92779 0.90918 0.90766 0.90260 0.84081 0.85058 0.87884 0.87503 0.84681 0.75514 0.89548 0.91363 0.89253 0.91460 0.92728 0.94820 0.90631 0.95024 0.93464 0.99270 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.90 71.98 0.71 -1.29 16 2 C -0.08 -1.45 6.06 29.85 0.18 -1.27 16 3 C -0.09 -2.15 5.13 -19.87 -0.10 -2.25 16 4 C -0.13 -3.20 9.70 22.27 0.22 -2.98 16 5 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 6 C -0.14 -4.55 9.70 22.27 0.22 -4.33 16 7 C -0.07 -2.14 4.37 -19.87 -0.09 -2.23 16 8 C -0.10 -2.67 5.83 29.10 0.17 -2.50 16 9 C 0.51 18.91 7.79 87.66 0.68 19.60 16 10 O -0.59 -27.90 15.70 -3.02 -0.05 -27.95 16 11 N -0.69 -23.55 4.92 -442.17 -2.17 -25.72 16 12 C 0.13 4.93 2.81 45.07 0.13 5.06 16 13 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 14 C -0.11 -3.14 5.59 30.62 0.17 -2.96 16 15 C -0.12 -3.21 5.21 30.67 0.16 -3.05 16 16 C 0.15 5.68 3.50 44.97 0.16 5.84 16 17 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 18 C -0.13 -4.22 7.94 71.98 0.57 -3.65 16 19 N -0.59 -28.20 2.91 -675.22 -1.96 -30.16 16 20 C -0.24 -12.45 8.61 84.03 0.72 -11.73 16 21 H 0.08 3.89 6.20 -2.91 -0.02 3.87 16 22 C -0.05 -3.13 4.96 84.86 0.42 -2.71 16 23 N -0.94 -58.51 11.14 21.65 0.24 -58.27 16 24 Si 0.95 46.28 29.58 68.60 2.03 48.31 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 26 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 28 C 0.17 8.62 4.89 86.36 0.42 9.04 16 29 C -0.11 -3.07 9.36 22.27 0.21 -2.86 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.10 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.11 2.87 8.09 -2.38 -0.02 2.85 16 39 H 0.14 2.61 8.08 -2.38 -0.02 2.60 16 40 H 0.41 11.42 6.77 -92.71 -0.63 10.79 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 45 H 0.05 1.77 7.40 -2.39 -0.02 1.75 16 46 H 0.03 1.27 7.66 -2.39 -0.02 1.25 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 50 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 51 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -75.04 401.19 3.53 -71.51 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.27 Total: 30.01 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.17 Total: -7.72 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -3.90 Total: -114.16 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.04 3.53 -71.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071623167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.044 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds