Wall clock time and date at job start Tue Mar 31 2020 16:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47084 * 2 1 4 4 C 1.38258 * 119.99625 * 89.99658 * 3 2 1 5 5 C 1.38216 * 119.99538 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00106 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00400 * 0.02638 * 6 5 4 8 8 C 1.50694 * 120.00092 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47251 * 89.99924 * 8 7 6 10 10 O 1.21283 * 120.00060 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99854 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99626 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.52463 * 324.92292 * 12 11 9 14 14 C 1.53036 * 109.49528 * 204.83771 * 12 11 9 15 15 C 1.53073 * 109.66593 * 301.35398 * 14 12 11 16 16 C 1.53197 * 109.28967 * 298.84952 * 15 14 12 17 17 H 1.09002 * 109.58621 * 294.55404 * 16 15 14 18 18 C 1.53004 * 109.58194 * 174.27771 * 16 15 14 19 19 N 1.46922 * 108.89463 * 54.41856 * 16 15 14 20 20 C 1.36938 * 120.62907 * 126.44474 * 19 16 15 21 21 H 1.08007 * 119.99809 * 330.15256 * 20 19 16 22 22 C 1.38812 * 120.00272 * 150.16239 * 20 19 16 23 23 N 1.31625 * 119.99667 * 344.50109 * 22 20 19 24 24 Si 1.86795 * 120.00181 * 164.50719 * 22 20 19 25 25 H 1.48502 * 109.47234 * 59.99768 * 24 22 20 26 26 H 1.48499 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47439 * 299.99570 * 24 22 20 28 28 C 1.46923 * 118.73920 * 306.46008 * 19 16 15 29 29 C 1.38210 * 120.00289 * 270.23557 * 3 2 1 30 30 H 1.09002 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47303 * 299.99498 * 1 2 3 32 32 H 1.08998 * 109.47316 * 60.00046 * 1 2 3 33 33 H 1.08995 * 109.47613 * 240.00077 * 2 1 3 34 34 H 1.08998 * 109.47316 * 119.99954 * 2 1 3 35 35 H 1.08004 * 120.00369 * 0.02562 * 4 3 2 36 36 H 1.08003 * 119.99690 * 180.02562 * 5 4 3 37 37 H 1.08005 * 119.99680 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47411 * 329.99540 * 8 7 6 39 39 H 1.09006 * 109.46569 * 209.99662 * 8 7 6 40 40 H 0.96996 * 120.00756 * 0.02562 * 11 9 8 41 41 H 1.09003 * 109.45952 * 61.44077 * 14 12 11 42 42 H 1.09006 * 109.45891 * 181.40515 * 14 12 11 43 43 H 1.08997 * 109.62759 * 178.83034 * 15 14 12 44 44 H 1.09001 * 109.39101 * 58.71725 * 15 14 12 45 45 H 1.08994 * 109.47174 * 300.27543 * 18 16 15 46 46 H 1.09007 * 109.46773 * 180.27921 * 18 16 15 47 47 H 1.08999 * 109.47451 * 60.28600 * 18 16 15 48 48 H 0.96999 * 119.99631 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.58523 * 173.39575 * 28 19 16 50 50 H 1.08994 * 109.58679 * 293.68004 * 28 19 16 51 51 H 1.08005 * 120.00038 * 0.03484 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1974 5 6 2.7238 3.3755 1.1974 6 6 2.9553 4.0269 0.0001 7 6 2.7251 3.3754 -1.1969 8 6 2.9769 4.0856 -2.5019 9 6 4.4002 3.8483 -2.9366 10 8 5.1376 3.1696 -2.2536 11 7 4.8535 4.3902 -4.0843 12 6 6.2374 4.1599 -4.5065 13 1 6.8836 4.1182 -3.6298 14 6 6.6892 5.3012 -5.4204 15 6 5.7649 5.3830 -6.6378 16 6 5.8449 4.0700 -7.4230 17 1 6.8464 3.9521 -7.8367 18 6 4.8198 4.0886 -8.5588 19 7 5.5527 2.9534 -6.5140 20 6 4.5786 2.0410 -6.8202 21 1 3.7253 2.3398 -7.4111 22 6 4.6877 0.7320 -6.3712 23 7 5.8417 0.2839 -5.9239 24 14 3.1972 -0.3934 -6.4021 25 1 2.7107 -0.5324 -7.7982 26 1 3.5745 -1.7292 -5.8745 27 1 2.1214 0.1866 -5.5585 28 6 6.3252 2.8346 -5.2699 29 6 2.2580 2.0741 -1.1969 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0830 1.5633 2.1327 36 1 2.9042 3.8845 2.1327 37 1 3.3153 5.0451 0.0002 38 1 2.8102 5.1549 -2.3717 39 1 2.2961 3.7016 -3.2617 40 1 4.2639 4.9333 -4.6304 41 1 6.6512 6.2424 -4.8719 42 1 7.7103 5.1166 -5.7542 43 1 6.0746 6.2092 -7.2778 44 1 4.7401 5.5453 -6.3039 45 1 3.8191 4.2065 -8.1432 46 1 4.8749 3.1516 -9.1132 47 1 5.0353 4.9205 -9.2293 48 1 5.9178 -0.6307 -5.6097 49 1 5.9118 2.0326 -4.6583 50 1 7.3663 2.6147 -5.5059 51 1 2.0739 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071623169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:12 Heat of formation + Delta-G solvation = -9.505251 kcal Electronic energy + Delta-G solvation = -29471.487054 eV Core-core repulsion = 25756.336198 eV Total energy + Delta-G solvation = -3715.150856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.83016 -38.93891 -37.44705 -34.37227 -33.98605 -32.70209 -32.28025 -30.63679 -29.87507 -29.39048 -27.43665 -26.00258 -24.89189 -23.86961 -22.21055 -22.07759 -21.06195 -20.36859 -19.71247 -18.68489 -16.82515 -16.41742 -16.12979 -15.65091 -15.45710 -15.01967 -14.72865 -14.27206 -13.99595 -13.85643 -13.69747 -13.52924 -13.39096 -13.11382 -13.01691 -12.86286 -12.70358 -12.43408 -12.05032 -11.93664 -11.66135 -11.58254 -11.21423 -11.18183 -11.13569 -10.94097 -10.87501 -10.72923 -10.68567 -10.64977 -10.38229 -10.32086 -9.95130 -9.52068 -9.44276 -9.25308 -8.58195 -8.44372 -8.39891 -8.27863 -6.56833 -5.72903 -3.17432 1.51438 1.59186 3.28265 3.37858 3.43595 3.45641 3.72123 4.11338 4.51082 4.79728 4.82298 4.96835 5.18987 5.25809 5.32674 5.35089 5.36552 5.39215 5.41641 5.50956 5.52479 5.56814 5.61735 5.63580 5.73420 5.74139 5.91087 5.94225 6.03270 6.13146 6.14079 6.17454 6.25805 6.28334 6.34528 6.36380 6.46165 6.55298 6.60666 6.62751 6.73105 6.74900 6.82222 6.94537 7.06664 7.15160 7.19217 7.44536 7.72719 7.85310 8.19701 8.51745 8.91127 9.25740 9.90360 10.47251 11.35027 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.004344 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.770945 B = 6444.117213 C = 8145.826143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.052 4.052 8 C -0.105 4.105 9 C 0.515 3.485 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.120 3.880 13 H 0.073 0.927 14 C -0.118 4.118 15 C -0.130 4.130 16 C 0.165 3.835 17 H 0.023 0.977 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.251 4.251 21 H 0.066 0.934 22 C 0.007 3.993 23 N -0.898 5.898 24 Si 0.895 3.105 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.163 3.837 29 C -0.099 4.099 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.394 0.606 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.253 0.747 49 H 0.095 0.905 50 H 0.023 0.977 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 9.241 8.788 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.145 4.145 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.353 5.353 12 C 0.014 3.986 13 H 0.091 0.909 14 C -0.156 4.156 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.041 0.959 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.541 5.541 24 Si 0.725 3.275 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.036 3.964 29 C -0.117 4.117 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.228 0.772 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.041 0.959 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.736 8.557 9.312 14.328 hybrid contribution -0.890 -0.430 -0.347 1.048 sum -7.626 8.127 8.965 14.303 Atomic orbital electron populations 1.21735 0.94899 1.01519 1.02040 1.20549 0.95990 0.92923 1.02979 1.19810 0.99211 0.95979 0.93076 1.20925 1.01028 0.95031 0.97189 1.20990 1.00133 0.95020 0.97625 1.20898 1.00244 0.99881 0.92012 1.19276 0.97950 0.94315 0.93700 1.20695 0.95980 1.01673 0.96168 1.20215 0.88826 0.79760 0.81175 1.90700 1.58019 1.38237 1.54635 1.45834 1.13932 1.52775 1.22785 1.21721 0.81811 0.98190 0.96891 0.90870 1.21688 0.99974 0.97360 0.96600 1.22065 0.98881 0.99080 0.96885 1.20455 0.95981 0.87680 0.90050 0.95897 1.21791 0.99306 1.00486 0.97674 1.44019 1.41761 1.27467 1.17280 1.19009 0.98408 0.88482 1.32193 0.91602 1.25064 0.95999 0.96564 1.01570 1.69982 1.22157 1.15841 1.46158 0.86498 0.82960 0.80314 0.77742 1.21012 1.21698 1.21133 1.21149 0.94761 0.93134 0.87326 1.20930 0.99003 0.93997 0.97779 0.92558 0.92749 0.92511 0.90844 0.91181 0.86593 0.86440 0.86561 0.88662 0.88047 0.77186 0.93129 0.91278 0.92928 0.92682 0.92990 0.92082 0.94484 0.93640 0.88727 0.95884 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.09 -1.07 6.06 -27.88 -0.17 -1.24 16 3 C -0.08 -1.16 5.13 -104.62 -0.54 -1.69 16 4 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 5 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 6 C -0.11 -1.57 9.70 -39.59 -0.38 -1.95 16 7 C -0.05 -0.80 4.37 -104.63 -0.46 -1.26 16 8 C -0.11 -1.53 5.83 -29.04 -0.17 -1.69 16 9 C 0.51 9.57 7.79 -10.99 -0.09 9.48 16 10 O -0.54 -12.30 15.70 5.56 0.09 -12.21 16 11 N -0.70 -12.30 4.92 -53.69 -0.26 -12.57 16 12 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 13 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.12 -1.86 5.58 -26.67 -0.15 -2.01 16 15 C -0.13 -2.03 5.22 -26.59 -0.14 -2.17 16 16 C 0.17 3.22 3.49 -67.60 -0.24 2.99 16 17 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 18 C -0.14 -2.42 7.95 37.16 0.30 -2.12 16 19 N -0.58 -13.72 2.91 -164.77 -0.48 -14.20 16 20 C -0.25 -6.55 8.57 -15.06 -0.13 -6.68 16 21 H 0.07 1.67 6.24 -52.48 -0.33 1.35 16 22 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 23 N -0.90 -26.40 11.23 55.49 0.62 -25.78 16 24 Si 0.89 21.80 29.58 -169.99 -5.03 16.77 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.16 3.89 4.88 -3.71 -0.02 3.87 16 29 C -0.10 -1.59 9.36 -39.58 -0.37 -1.96 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.10 1.41 8.08 -51.93 -0.42 0.99 16 40 H 0.39 6.05 6.78 -40.82 -0.28 5.77 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.84 6.41 -51.93 -0.33 0.50 16 45 H 0.05 0.92 7.42 -51.93 -0.39 0.54 16 46 H 0.06 1.21 7.64 -51.93 -0.40 0.81 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 50 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -31.84 401.38 -10.99 -42.83 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.74 Total: 8.41 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.24 Total: -9.31 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.12 Total: -52.54 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.84 -10.99 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071623169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.327 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds