Wall clock time and date at job start Tue Mar 31 2020 16:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47251 * 2 1 4 4 C 1.38259 * 119.99831 * 269.97575 * 3 2 1 5 5 C 1.38210 * 120.00011 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99883 * 359.85765 * 5 4 3 7 7 C 1.38219 * 119.99730 * 0.40135 * 6 5 4 8 8 C 1.50694 * 119.99707 * 179.80771 * 7 6 5 9 9 C 1.50703 * 109.47353 * 269.72614 * 8 7 6 10 10 O 1.21285 * 119.99648 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00332 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00082 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49468 * 35.00114 * 12 11 9 14 14 C 1.53040 * 109.52402 * 155.07587 * 12 11 9 15 15 C 1.53041 * 109.54067 * 181.33323 * 14 12 11 16 16 C 1.53188 * 109.31321 * 298.63929 * 15 14 12 17 17 H 1.09006 * 109.58657 * 294.84759 * 16 15 14 18 18 C 1.53001 * 109.58838 * 174.41979 * 16 15 14 19 19 N 1.46934 * 108.77612 * 54.63070 * 16 15 14 20 20 C 1.36934 * 120.62859 * 126.41605 * 19 16 15 21 21 H 1.08006 * 120.00039 * 330.14868 * 20 19 16 22 22 C 1.38810 * 120.00048 * 150.15474 * 20 19 16 23 23 N 1.31613 * 120.00073 * 344.49209 * 22 20 19 24 24 Si 1.86799 * 119.99878 * 164.49110 * 22 20 19 25 25 H 1.48494 * 109.47455 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47013 * 120.00151 * 24 22 20 27 27 H 1.48504 * 109.47356 * 239.99989 * 24 22 20 28 28 C 1.46923 * 118.73809 * 306.39296 * 19 16 15 29 29 C 1.38211 * 119.99865 * 90.00201 * 3 2 1 30 30 H 1.09003 * 109.47011 * 300.00164 * 1 2 3 31 31 H 1.08995 * 109.47446 * 59.99619 * 1 2 3 32 32 H 1.09005 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47011 * 239.99836 * 2 1 3 34 34 H 1.09002 * 109.47108 * 120.00206 * 2 1 3 35 35 H 1.08003 * 120.00188 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99968 * 180.02562 * 5 4 3 37 37 H 1.07992 * 120.00170 * 180.20951 * 6 5 4 38 38 H 1.09005 * 109.47411 * 149.72298 * 8 7 6 39 39 H 1.08998 * 109.47467 * 29.72313 * 8 7 6 40 40 H 0.97000 * 119.99768 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.46361 * 301.35654 * 14 12 11 42 42 H 1.09003 * 109.45705 * 61.31595 * 14 12 11 43 43 H 1.08994 * 109.50001 * 178.68407 * 15 14 12 44 44 H 1.09006 * 109.52338 * 58.60336 * 15 14 12 45 45 H 1.09003 * 109.46639 * 300.71148 * 18 16 15 46 46 H 1.08995 * 109.46668 * 60.70775 * 18 16 15 47 47 H 1.09000 * 109.47171 * 180.70929 * 18 16 15 48 48 H 0.96999 * 120.00109 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.58877 * 293.81965 * 28 19 16 50 50 H 1.09004 * 109.70170 * 173.46482 * 28 19 16 51 51 H 1.07997 * 120.00139 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0724 -1.1974 5 6 2.7234 3.3756 -1.1974 6 6 2.9501 4.0287 0.0000 7 6 2.7243 3.3755 1.1970 8 6 2.9755 4.0859 2.5020 9 6 4.3985 3.8483 2.9376 10 8 5.1360 3.1686 2.2555 11 7 4.8514 4.3903 4.0854 12 6 6.2346 4.1589 4.5090 13 1 6.8810 4.1149 3.6325 14 6 6.6880 5.3010 5.4212 15 6 8.1436 5.0767 5.8372 16 6 8.2508 3.7630 6.6177 17 1 7.6956 3.8466 7.5520 18 6 9.7210 3.4623 6.9165 19 7 7.6826 2.6807 5.8023 20 6 8.4090 1.5500 5.5397 21 1 9.4863 1.6012 5.4831 22 6 7.7606 0.3380 5.3462 23 7 6.5028 0.1994 5.7079 24 14 8.6734 -1.0964 4.5723 25 1 10.0651 -0.6854 4.2572 26 1 8.6968 -2.2382 5.5215 27 1 7.9837 -1.5057 3.3225 28 6 6.3201 2.8347 5.2745 29 6 2.2627 2.0723 1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.0832 1.5633 -2.1327 36 1 2.9034 3.8847 -2.1327 37 1 3.3065 5.0481 0.0000 38 1 2.2942 3.7024 3.2615 39 1 2.8093 5.1552 2.3715 40 1 4.2615 4.9337 4.6310 41 1 6.6048 6.2474 4.8869 42 1 6.0567 5.3288 6.3094 43 1 8.4732 5.9024 6.4678 44 1 8.7726 5.0242 4.9484 45 1 10.2737 3.3857 5.9801 46 1 10.1405 4.2662 7.5213 47 1 9.7960 2.5209 7.4608 48 1 6.0496 -0.6475 5.5723 49 1 5.6075 2.8427 6.0992 50 1 6.0911 2.0082 4.6016 51 1 2.0823 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071623170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:16 Heat of formation + Delta-G solvation = -11.309263 kcal Electronic energy + Delta-G solvation = -28764.872720 eV Core-core repulsion = 25049.643637 eV Total energy + Delta-G solvation = -3715.229083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.90514 -38.91979 -37.51333 -34.51919 -34.20649 -32.78108 -32.37198 -30.66440 -29.82943 -29.46723 -27.60549 -25.77627 -24.81678 -23.93857 -22.32951 -22.05423 -21.04713 -20.25098 -19.74329 -19.12869 -16.72195 -16.47655 -16.33900 -15.76656 -15.59655 -15.08645 -14.78366 -14.38632 -13.89244 -13.79266 -13.75732 -13.61857 -13.38662 -13.32800 -13.09112 -12.85835 -12.72844 -12.34434 -12.05664 -11.92564 -11.83792 -11.68355 -11.40658 -11.24622 -11.09013 -10.85945 -10.81713 -10.73363 -10.68991 -10.47921 -10.36646 -10.22115 -9.92996 -9.71558 -9.41213 -9.32140 -8.66057 -8.49476 -8.46223 -8.38156 -6.56981 -5.71083 -3.15623 1.43353 1.51559 3.11836 3.43823 3.52373 3.53094 3.55592 3.97577 4.56890 4.69231 4.73643 4.88992 5.10848 5.17818 5.21956 5.27990 5.32067 5.37870 5.40302 5.45122 5.49982 5.54806 5.60643 5.61523 5.66694 5.71807 5.84491 5.86255 6.00102 6.06282 6.13399 6.17281 6.20538 6.29629 6.33993 6.41709 6.48383 6.53952 6.54525 6.65279 6.66272 6.72623 6.78544 7.01779 7.07217 7.11251 7.15497 7.36281 7.77752 7.89526 8.00865 8.53816 8.74813 9.28231 9.92470 10.48034 11.37103 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.003536 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.939018 B = 7916.643640 C = 9615.657307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.056 4.056 8 C -0.104 4.104 9 C 0.509 3.491 10 O -0.523 6.523 11 N -0.724 5.724 12 C 0.117 3.883 13 H 0.080 0.920 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.136 4.136 19 N -0.584 5.584 20 C -0.252 4.252 21 H 0.070 0.930 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.170 3.830 29 C -0.099 4.099 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.391 0.609 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.061 0.939 48 H 0.251 0.749 49 H 0.016 0.984 50 H 0.092 0.908 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 9.641 -7.637 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.057 4.057 8 C -0.144 4.144 9 C 0.294 3.706 10 O -0.398 6.398 11 N -0.375 5.375 12 C 0.012 3.988 13 H 0.098 0.902 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.194 4.194 19 N -0.307 5.307 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.043 3.957 29 C -0.117 4.117 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.224 0.776 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.110 0.890 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.826 8.971 -8.138 16.245 hybrid contribution 0.100 -0.473 -0.081 0.490 sum -10.727 8.498 -8.219 15.963 Atomic orbital electron populations 1.21733 0.94874 1.01533 1.02012 1.20551 0.95959 0.92847 1.03083 1.19821 0.99164 0.96022 0.93094 1.20949 1.00767 0.95014 0.97283 1.21015 0.99941 0.95011 0.97702 1.20917 1.00094 0.99931 0.92038 1.19259 0.98371 0.94364 0.93664 1.20703 0.95525 1.01940 0.96201 1.20358 0.89049 0.79999 0.81181 1.90771 1.57861 1.37342 1.53843 1.46086 1.14462 1.53368 1.23550 1.21947 0.80680 0.97976 0.98199 0.90191 1.21673 0.97759 0.97044 0.98898 1.22046 0.95178 0.98820 1.00569 1.20489 0.93443 0.87928 0.92299 0.95798 1.21799 0.96166 1.00567 1.00845 1.44029 1.13901 1.16446 1.56337 1.19171 0.90984 0.85063 1.42968 0.91250 1.25066 0.96484 0.97234 1.00370 1.70010 1.10974 1.24565 1.48844 0.86292 0.79340 0.82588 0.78977 1.20204 1.21796 1.21522 1.21047 0.85856 0.93358 0.95472 1.20884 0.99220 0.93909 0.97735 0.92554 0.92758 0.92529 0.91150 0.90784 0.86517 0.86348 0.86495 0.88174 0.88434 0.77601 0.93175 0.92340 0.92737 0.92122 0.92823 0.94370 0.91982 0.93849 0.96641 0.88955 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.89 37.15 0.37 -0.96 16 2 C -0.09 -0.98 6.06 -27.89 -0.17 -1.14 16 3 C -0.08 -1.08 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 5 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 6 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 7 C -0.06 -0.79 4.37 -104.63 -0.46 -1.25 16 8 C -0.10 -1.29 5.83 -29.04 -0.17 -1.46 16 9 C 0.51 8.81 7.79 -10.99 -0.09 8.73 16 10 O -0.52 -11.88 15.70 5.55 0.09 -11.79 16 11 N -0.72 -11.61 5.08 -53.69 -0.27 -11.88 16 12 C 0.12 2.29 2.60 -67.81 -0.18 2.12 16 13 H 0.08 1.81 7.58 -51.93 -0.39 1.41 16 14 C -0.12 -1.87 5.36 -26.69 -0.14 -2.01 16 15 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 16 C 0.16 3.42 3.50 -67.60 -0.24 3.18 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.59 7.95 37.16 0.30 -2.30 16 19 N -0.58 -14.71 2.99 -164.77 -0.49 -15.20 16 20 C -0.25 -7.01 8.57 -15.06 -0.13 -7.14 16 21 H 0.07 1.88 6.24 -52.48 -0.33 1.56 16 22 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 23 N -0.90 -26.92 11.23 55.49 0.62 -26.30 16 24 Si 0.90 22.74 29.58 -169.99 -5.03 17.71 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 28 C 0.17 4.14 4.85 -3.72 -0.02 4.12 16 29 C -0.10 -1.44 9.36 -39.59 -0.37 -1.81 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.39 4.77 8.60 -40.82 -0.35 4.42 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 51 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -33.96 404.87 -11.11 -45.07 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.91 Total: 5.63 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.22 Total: -9.34 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.14 Total: -53.38 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.96 -11.11 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071623170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds