Wall clock time and date at job start Tue Mar 31 2020 16:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47270 * 2 1 4 4 C 1.38233 * 119.99963 * 89.99318 * 3 2 1 5 5 C 1.38236 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99713 * 359.96168 * 5 4 3 7 7 C 1.50702 * 120.00000 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46881 * 90.00108 * 7 6 5 9 9 O 1.21285 * 119.99878 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.49685 * 34.94167 * 11 10 8 13 13 C 1.53038 * 109.49316 * 155.00306 * 11 10 8 14 14 C 1.53037 * 109.54201 * 58.62079 * 13 11 10 15 15 C 1.53191 * 109.31399 * 61.36042 * 14 13 11 16 16 H 1.09000 * 109.70092 * 65.22500 * 15 14 13 17 17 C 1.52999 * 109.58782 * 185.57956 * 15 14 13 18 18 N 1.46923 * 108.77587 * 305.37059 * 15 14 13 19 19 C 1.36939 * 120.62665 * 233.32978 * 18 15 14 20 20 H 1.07999 * 120.00324 * 29.08377 * 19 18 15 21 21 C 1.38813 * 119.99779 * 209.07283 * 19 18 15 22 22 N 1.31618 * 120.00339 * 15.11896 * 21 19 18 23 23 Si 1.86809 * 119.99848 * 195.11671 * 21 19 18 24 24 H 1.48495 * 109.47239 * 90.00412 * 23 21 19 25 25 H 1.48499 * 109.46681 * 210.00311 * 23 21 19 26 26 H 1.48504 * 109.46862 * 329.99859 * 23 21 19 27 27 C 1.46928 * 118.74161 * 53.60326 * 18 15 14 28 28 C 1.38239 * 120.00421 * 0.27577 * 6 5 4 29 29 C 1.38239 * 119.99702 * 359.51095 * 28 6 5 30 30 H 1.09003 * 109.46510 * 60.00029 * 1 2 3 31 31 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 300.00257 * 1 2 3 33 33 H 1.09003 * 109.47273 * 239.99765 * 2 1 3 34 34 H 1.09003 * 109.47018 * 119.99396 * 2 1 3 35 35 H 1.07998 * 120.00158 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00046 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47428 * 330.00405 * 7 6 5 38 38 H 1.09003 * 109.47538 * 210.00200 * 7 6 5 39 39 H 0.97002 * 119.99513 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46620 * 298.59756 * 13 11 10 41 41 H 1.09005 * 109.46046 * 178.64046 * 13 11 10 42 42 H 1.09004 * 109.49658 * 301.41152 * 14 13 11 43 43 H 1.09001 * 109.50029 * 181.31302 * 14 13 11 44 44 H 1.09003 * 109.46996 * 179.29184 * 17 15 14 45 45 H 1.09000 * 109.46854 * 299.28563 * 17 15 14 46 46 H 1.08998 * 109.47376 * 59.28996 * 17 15 14 47 47 H 0.96995 * 120.00537 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58477 * 66.18077 * 27 18 15 49 49 H 1.09001 * 109.58442 * 186.60596 * 27 18 15 50 50 H 1.07998 * 120.00370 * 179.72662 * 28 6 5 51 51 H 1.07987 * 120.00146 * 180.25426 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9558 4.0267 0.0000 7 6 3.4581 5.4475 -0.0001 8 6 4.9652 5.4474 0.0016 9 8 5.5715 4.3970 0.0023 10 7 5.6392 6.6145 0.0013 11 6 7.1042 6.6144 0.0036 12 1 7.4688 5.7715 -0.5834 13 6 7.6159 7.9212 -0.6067 14 6 7.0777 9.1069 0.1973 15 6 7.5872 9.0145 1.6390 16 1 8.6710 9.1295 1.6538 17 6 6.9429 10.1166 2.4823 18 7 7.2238 7.7001 2.1856 19 6 6.5395 7.6010 3.3676 20 1 5.8689 8.3912 3.6713 21 6 6.7075 6.4847 4.1754 22 7 7.7228 5.6721 3.9723 23 14 5.4925 6.1356 5.5508 24 1 4.3892 5.2871 5.0332 25 1 6.1861 5.4260 6.6556 26 1 4.9366 7.4163 6.0570 27 6 7.6139 6.4937 1.4431 28 6 2.7208 3.3767 -1.1972 29 6 2.2637 2.0721 -1.1972 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.0822 1.5636 2.1324 36 1 2.9035 3.8849 2.1324 37 1 3.0939 5.9618 0.8892 38 1 3.0958 5.9611 -0.8907 39 1 5.1542 7.4546 0.0004 40 1 7.2750 7.9979 -1.6392 41 1 8.7057 7.9310 -0.5828 42 1 5.9879 9.0838 0.1943 43 1 7.4235 10.0380 -0.2518 44 1 7.2970 10.0413 3.5105 45 1 7.2138 11.0908 2.0752 46 1 5.8590 10.0030 2.4621 47 1 7.8405 4.8923 4.5369 48 1 8.7001 6.4021 1.4396 49 1 7.1726 5.6157 1.9147 50 1 2.8977 3.8869 -2.1325 51 1 2.0841 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071857499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:19 Heat of formation + Delta-G solvation = -9.133310 kcal Electronic energy + Delta-G solvation = -29198.899741 eV Core-core repulsion = 25483.765014 eV Total energy + Delta-G solvation = -3715.134727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.81946 -38.95003 -37.46452 -34.58260 -33.98596 -32.70645 -31.47785 -30.74526 -30.34758 -29.82914 -27.18869 -26.00753 -24.91193 -23.30670 -22.57426 -22.14626 -21.04595 -20.40141 -19.95555 -18.68166 -16.81757 -16.34550 -15.96974 -15.69839 -15.44046 -15.04977 -14.69109 -14.28094 -13.98670 -13.84049 -13.73332 -13.63023 -13.39354 -13.21129 -13.08873 -12.87172 -12.72399 -12.49942 -12.09069 -11.90358 -11.64733 -11.61264 -11.21886 -11.17622 -11.15158 -10.92579 -10.87282 -10.75018 -10.71881 -10.69503 -10.36873 -10.30796 -9.94286 -9.51746 -9.43052 -9.23736 -8.71090 -8.43436 -8.32119 -8.27120 -6.58058 -5.72224 -3.16671 1.48758 1.61527 3.28887 3.38269 3.44117 3.46827 3.71903 4.11817 4.51269 4.73173 4.83535 4.95976 5.10135 5.15625 5.27210 5.33019 5.37559 5.38043 5.44138 5.47730 5.52972 5.55319 5.60994 5.62318 5.70024 5.75767 5.78156 5.93843 6.03342 6.04205 6.13491 6.16968 6.23068 6.25763 6.34469 6.36255 6.46273 6.55386 6.58419 6.62919 6.73651 6.75216 6.81837 6.94860 7.06351 7.15347 7.19159 7.45393 7.74579 7.85845 8.20328 8.51654 8.91804 9.26027 9.90667 10.46861 11.35367 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003669 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.188513 B = 7629.970212 C = 9033.869770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.059 4.059 7 C -0.105 4.105 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.703 5.703 11 C 0.120 3.880 12 H 0.073 0.927 13 C -0.118 4.118 14 C -0.129 4.129 15 C 0.165 3.835 16 H 0.024 0.976 17 C -0.135 4.135 18 N -0.582 5.582 19 C -0.250 4.250 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.898 5.898 23 Si 0.895 3.105 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.162 3.838 28 C -0.105 4.105 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.394 0.606 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.022 0.978 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 -1.601 -11.200 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.116 4.116 6 C -0.060 4.060 7 C -0.145 4.145 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.353 5.353 11 C 0.014 3.986 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.169 4.169 15 C 0.058 3.942 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.306 5.306 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.725 3.275 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.036 3.964 28 C -0.123 4.123 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.116 0.884 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.643 -2.493 -11.079 15.564 hybrid contribution -0.649 0.219 0.859 1.099 sum -11.291 -2.273 -10.220 15.399 Atomic orbital electron populations 1.21743 0.94972 1.01384 1.02156 1.20517 0.95930 0.92991 1.02670 1.19813 0.99868 0.95979 0.93290 1.20943 1.00323 0.94791 0.97376 1.21051 0.97914 0.94871 0.97774 1.19287 0.98324 0.94941 0.93406 1.20690 0.93785 0.95236 1.04748 1.20232 0.89073 0.84157 0.76548 1.90700 1.70089 1.31289 1.49536 1.45838 1.07450 1.07759 1.74291 1.21726 0.79453 0.96674 1.00784 0.90885 1.21687 1.00895 0.95212 0.97851 1.22053 1.00193 0.96546 0.98069 1.20459 0.95732 0.87469 0.90546 0.95880 1.21795 1.00705 0.96018 1.00770 1.44053 1.65334 0.98739 1.22442 1.19091 1.17567 1.05264 0.96077 0.91434 1.25048 0.96842 0.99813 0.97566 1.69979 1.27890 1.15916 1.40468 0.86409 0.81074 0.77998 0.81996 1.21548 1.21835 1.20546 1.21184 0.96353 0.92119 0.86790 1.20899 0.99280 0.94876 0.97207 1.20873 1.00926 0.94790 0.97212 0.92659 0.92654 0.92578 0.91254 0.91177 0.86399 0.86063 0.88052 0.88708 0.77190 0.93135 0.91274 0.92650 0.92969 0.92071 0.94473 0.92990 0.93691 0.95957 0.88449 0.86502 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.89 16 2 C -0.08 -0.85 6.06 -27.88 -0.17 -1.02 16 3 C -0.09 -1.17 5.13 -104.62 -0.54 -1.70 16 4 C -0.12 -1.67 9.70 -39.58 -0.38 -2.06 16 5 C -0.10 -1.57 9.70 -39.58 -0.38 -1.96 16 6 C -0.06 -0.91 4.37 -104.62 -0.46 -1.37 16 7 C -0.10 -1.51 5.83 -29.03 -0.17 -1.68 16 8 C 0.51 9.58 7.79 -10.98 -0.09 9.49 16 9 O -0.54 -12.34 15.70 5.55 0.09 -12.26 16 10 N -0.70 -12.32 4.92 -53.70 -0.26 -12.58 16 11 C 0.12 2.28 2.81 -67.82 -0.19 2.09 16 12 H 0.07 1.46 7.57 -51.93 -0.39 1.07 16 13 C -0.12 -1.86 5.58 -26.69 -0.15 -2.01 16 14 C -0.13 -2.03 5.21 -26.61 -0.14 -2.16 16 15 C 0.16 3.21 3.50 -67.60 -0.24 2.98 16 16 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 17 C -0.14 -2.42 7.94 37.16 0.30 -2.12 16 18 N -0.58 -13.71 2.91 -164.78 -0.48 -14.19 16 19 C -0.25 -6.52 8.60 -15.06 -0.13 -6.65 16 20 H 0.07 1.72 6.21 -52.49 -0.33 1.39 16 21 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 22 N -0.90 -26.42 11.13 55.49 0.62 -25.80 16 23 Si 0.89 21.80 29.58 -169.99 -5.03 16.78 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.88 4.88 -3.71 -0.02 3.86 16 28 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 29 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 38 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 39 H 0.39 6.05 6.77 -40.82 -0.28 5.77 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.21 7.61 -51.93 -0.40 0.81 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.92 7.46 -51.93 -0.39 0.54 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 2.76 6.06 -51.93 -0.31 2.45 16 50 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 51 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -31.90 401.19 -11.00 -42.89 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.74 Total: 8.02 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.24 Total: -8.91 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.13 Total: -52.58 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.90 -11.00 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.760 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds