Wall clock time and date at job start Tue Mar 31 2020 16:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47270 * 2 1 4 4 C 1.38233 * 119.99963 * 89.99318 * 3 2 1 5 5 C 1.38236 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99713 * 359.96168 * 5 4 3 7 7 C 1.50702 * 120.00000 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46881 * 90.00108 * 7 6 5 9 9 O 1.21285 * 119.99878 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.49685 * 34.94167 * 11 10 8 13 13 C 1.53038 * 109.49316 * 155.00306 * 11 10 8 14 14 C 1.53037 * 109.54201 * 58.62079 * 13 11 10 15 15 C 1.53191 * 109.31399 * 61.36042 * 14 13 11 16 16 H 1.09000 * 109.70092 * 65.22500 * 15 14 13 17 17 C 1.52999 * 109.58782 * 185.57956 * 15 14 13 18 18 N 1.46923 * 108.77587 * 305.37059 * 15 14 13 19 19 C 1.36939 * 120.62665 * 233.32978 * 18 15 14 20 20 H 1.07999 * 120.00324 * 29.08377 * 19 18 15 21 21 C 1.38813 * 119.99779 * 209.07283 * 19 18 15 22 22 N 1.31618 * 120.00339 * 15.11896 * 21 19 18 23 23 Si 1.86809 * 119.99848 * 195.11671 * 21 19 18 24 24 H 1.48495 * 109.47239 * 90.00412 * 23 21 19 25 25 H 1.48499 * 109.46681 * 210.00311 * 23 21 19 26 26 H 1.48504 * 109.46862 * 329.99859 * 23 21 19 27 27 C 1.46928 * 118.74161 * 53.60326 * 18 15 14 28 28 C 1.38239 * 120.00421 * 0.27577 * 6 5 4 29 29 C 1.38239 * 119.99702 * 359.51095 * 28 6 5 30 30 H 1.09003 * 109.46510 * 60.00029 * 1 2 3 31 31 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 300.00257 * 1 2 3 33 33 H 1.09003 * 109.47273 * 239.99765 * 2 1 3 34 34 H 1.09003 * 109.47018 * 119.99396 * 2 1 3 35 35 H 1.07998 * 120.00158 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00046 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47428 * 330.00405 * 7 6 5 38 38 H 1.09003 * 109.47538 * 210.00200 * 7 6 5 39 39 H 0.97002 * 119.99513 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46620 * 298.59756 * 13 11 10 41 41 H 1.09005 * 109.46046 * 178.64046 * 13 11 10 42 42 H 1.09004 * 109.49658 * 301.41152 * 14 13 11 43 43 H 1.09001 * 109.50029 * 181.31302 * 14 13 11 44 44 H 1.09003 * 109.46996 * 179.29184 * 17 15 14 45 45 H 1.09000 * 109.46854 * 299.28563 * 17 15 14 46 46 H 1.08998 * 109.47376 * 59.28996 * 17 15 14 47 47 H 0.96995 * 120.00537 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58477 * 66.18077 * 27 18 15 49 49 H 1.09001 * 109.58442 * 186.60596 * 27 18 15 50 50 H 1.07998 * 120.00370 * 179.72662 * 28 6 5 51 51 H 1.07987 * 120.00146 * 180.25426 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9558 4.0267 0.0000 7 6 3.4581 5.4475 -0.0001 8 6 4.9652 5.4474 0.0016 9 8 5.5715 4.3970 0.0023 10 7 5.6392 6.6145 0.0013 11 6 7.1042 6.6144 0.0036 12 1 7.4688 5.7715 -0.5834 13 6 7.6159 7.9212 -0.6067 14 6 7.0777 9.1069 0.1973 15 6 7.5872 9.0145 1.6390 16 1 8.6710 9.1295 1.6538 17 6 6.9429 10.1166 2.4823 18 7 7.2238 7.7001 2.1856 19 6 6.5395 7.6010 3.3676 20 1 5.8689 8.3912 3.6713 21 6 6.7075 6.4847 4.1754 22 7 7.7228 5.6721 3.9723 23 14 5.4925 6.1356 5.5508 24 1 4.3892 5.2871 5.0332 25 1 6.1861 5.4260 6.6556 26 1 4.9366 7.4163 6.0570 27 6 7.6139 6.4937 1.4431 28 6 2.7208 3.3767 -1.1972 29 6 2.2637 2.0721 -1.1972 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.0822 1.5636 2.1324 36 1 2.9035 3.8849 2.1324 37 1 3.0939 5.9618 0.8892 38 1 3.0958 5.9611 -0.8907 39 1 5.1542 7.4546 0.0004 40 1 7.2750 7.9979 -1.6392 41 1 8.7057 7.9310 -0.5828 42 1 5.9879 9.0838 0.1943 43 1 7.4235 10.0380 -0.2518 44 1 7.2970 10.0413 3.5105 45 1 7.2138 11.0908 2.0752 46 1 5.8590 10.0030 2.4621 47 1 7.8405 4.8923 4.5369 48 1 8.7001 6.4021 1.4396 49 1 7.1726 5.6157 1.9147 50 1 2.8977 3.8869 -2.1325 51 1 2.0841 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071857499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:18 Heat of formation + Delta-G solvation = -26.781086 kcal Electronic energy + Delta-G solvation = -29199.665006 eV Core-core repulsion = 25483.765014 eV Total energy + Delta-G solvation = -3715.899992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.16996 -40.21652 -39.01516 -35.79429 -35.44520 -34.48492 -32.73024 -31.82127 -31.78408 -31.50804 -28.34991 -27.63607 -26.62888 -24.28340 -23.85025 -23.65265 -22.34734 -21.87324 -21.18366 -20.33302 -18.33355 -18.05172 -17.26415 -17.04571 -16.79359 -16.40771 -15.97342 -15.86201 -15.58221 -15.41099 -14.93479 -14.73310 -14.60532 -14.53896 -14.43319 -14.17905 -14.03141 -13.71170 -13.67128 -13.01955 -12.94200 -12.91643 -12.79521 -12.61782 -12.54411 -12.53397 -12.38826 -12.09925 -12.06546 -12.05377 -11.71289 -11.66440 -11.56260 -11.20053 -11.03415 -10.79516 -10.51561 -9.87092 -9.80507 -9.40752 -8.57024 -7.80869 -5.26368 0.40066 0.51566 1.40152 1.42022 1.49617 1.83295 2.42506 2.50544 2.93144 3.34902 3.64520 3.71835 3.87514 3.93940 4.02456 4.11853 4.12796 4.16938 4.21737 4.24494 4.46223 4.50118 4.52612 4.57659 4.60174 4.67208 4.73720 4.75348 4.77479 4.84794 4.98242 5.04211 5.06055 5.07507 5.11143 5.13383 5.18976 5.21659 5.28869 5.34995 5.38142 5.51107 5.58323 5.63968 5.69990 5.71909 5.71991 5.76858 5.80836 6.13656 6.44933 6.79073 7.19519 7.49678 7.94383 8.45036 9.23963 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003669 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.188513 B = 7629.970212 C = 9033.869770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.095 4.095 8 C 0.508 3.492 9 O -0.589 6.589 10 N -0.693 5.693 11 C 0.130 3.870 12 H 0.059 0.941 13 C -0.110 4.110 14 C -0.117 4.117 15 C 0.152 3.848 16 H 0.010 0.990 17 C -0.128 4.128 18 N -0.593 5.593 19 C -0.234 4.234 20 H 0.079 0.921 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.948 3.052 24 H -0.294 1.294 25 H -0.304 1.304 26 H -0.260 1.260 27 C 0.172 3.828 28 C -0.110 4.110 29 C -0.123 4.123 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.408 0.592 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.241 0.759 48 H -0.011 1.011 49 H 0.047 0.953 50 H 0.139 0.861 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 0.276 -13.824 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.080 4.080 7 C -0.134 4.134 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.344 5.344 11 C 0.023 3.977 12 H 0.077 0.923 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.047 3.953 16 H 0.028 0.972 17 C -0.185 4.185 18 N -0.317 5.317 19 C -0.365 4.365 20 H 0.097 0.903 21 C -0.250 4.250 22 N -0.586 5.586 23 Si 0.778 3.222 24 H -0.221 1.221 25 H -0.231 1.231 26 H -0.184 1.184 27 C 0.045 3.955 28 C -0.128 4.128 29 C -0.141 4.141 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.245 0.755 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.007 0.993 49 H 0.065 0.935 50 H 0.157 0.843 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.860 -0.534 -13.718 18.811 hybrid contribution 0.086 -0.349 1.658 1.697 sum -12.774 -0.884 -12.060 17.590 Atomic orbital electron populations 1.21712 0.93651 1.02492 1.01983 1.20585 0.96990 0.91107 1.03379 1.20186 0.98850 0.97321 0.92789 1.21143 1.00704 0.94491 0.98640 1.21116 0.99782 0.95979 0.97613 1.19474 0.99105 0.95658 0.93732 1.20697 0.90291 0.95513 1.06914 1.21025 0.90846 0.83493 0.75122 1.90677 1.71501 1.33106 1.51714 1.45741 1.06728 1.08341 1.73578 1.21391 0.80544 0.98625 0.97132 0.92313 1.21652 1.00860 0.92810 0.99444 1.21940 1.00824 0.98025 0.94826 1.20787 0.95396 0.85643 0.93468 0.97247 1.21724 1.00501 0.97253 0.99068 1.44267 1.65191 1.00289 1.21964 1.19454 1.16494 1.04481 0.96062 0.90342 1.25731 0.98455 1.00560 1.00213 1.70169 1.30198 1.16452 1.41763 0.85534 0.78993 0.78235 0.79453 1.22115 1.23123 1.18402 1.20841 0.94121 0.90813 0.89703 1.21217 0.98715 0.95447 0.97422 1.21272 0.99873 0.94627 0.98313 0.92315 0.90913 0.93281 0.89900 0.91147 0.85722 0.88022 0.87574 0.84540 0.75495 0.89520 0.91375 0.91429 0.89242 0.94794 0.90637 0.92731 0.95030 0.99261 0.93472 0.84335 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 71.98 0.71 -1.45 16 2 C -0.08 -1.55 6.06 29.85 0.18 -1.37 16 3 C -0.09 -2.31 5.13 -19.86 -0.10 -2.41 16 4 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 5 C -0.13 -4.24 9.70 22.27 0.22 -4.03 16 6 C -0.08 -2.43 4.37 -19.86 -0.09 -2.52 16 7 C -0.09 -2.63 5.83 29.10 0.17 -2.46 16 8 C 0.51 18.86 7.79 87.66 0.68 19.55 16 9 O -0.59 -27.98 15.70 -3.05 -0.05 -28.03 16 10 N -0.69 -23.50 4.92 -442.18 -2.17 -25.68 16 11 C 0.13 4.94 2.81 45.07 0.13 5.06 16 12 H 0.06 2.41 7.57 -2.39 -0.02 2.40 16 13 C -0.11 -3.14 5.58 30.62 0.17 -2.97 16 14 C -0.12 -3.20 5.21 30.67 0.16 -3.04 16 15 C 0.15 5.67 3.50 44.97 0.16 5.83 16 16 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 17 C -0.13 -4.23 7.94 71.98 0.57 -3.66 16 18 N -0.59 -28.19 2.91 -675.24 -1.97 -30.16 16 19 C -0.23 -12.35 8.60 84.03 0.72 -11.63 16 20 H 0.08 3.93 6.21 -2.91 -0.02 3.91 16 21 C -0.05 -3.14 4.96 84.86 0.42 -2.72 16 22 N -0.94 -58.58 11.13 21.65 0.24 -58.34 16 23 Si 0.95 46.37 29.58 68.60 2.03 48.40 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 26 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.17 8.61 4.88 86.36 0.42 9.03 16 28 C -0.11 -2.90 9.70 22.27 0.22 -2.69 16 29 C -0.12 -2.97 9.70 22.27 0.22 -2.75 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.07 1.30 8.09 -2.39 -0.02 1.29 16 35 H 0.12 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.10 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.11 2.84 8.09 -2.39 -0.02 2.82 16 38 H 0.14 2.58 8.08 -2.39 -0.02 2.57 16 39 H 0.41 11.37 6.77 -92.71 -0.63 10.74 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 1.28 7.61 -2.39 -0.02 1.26 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.77 7.46 -2.39 -0.02 1.75 16 47 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 48 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 49 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 50 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 51 H 0.15 2.60 8.06 -2.92 -0.02 2.58 16 Total: -1.00 -75.45 401.19 3.53 -71.92 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.27 Total: 29.77 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.17 Total: -7.88 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.90 Total: -114.18 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.45 3.53 -71.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.134 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds