Wall clock time and date at job start Tue Mar 31 2020 16:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47200 * 2 1 4 4 C 1.38238 * 120.00353 * 269.72828 * 3 2 1 5 5 C 1.38229 * 119.99899 * 179.79037 * 4 3 2 6 6 C 1.38238 * 120.00349 * 0.43874 * 5 4 3 7 7 C 1.50693 * 120.00177 * 179.83186 * 6 5 4 8 8 C 1.50701 * 109.47533 * 269.98077 * 7 6 5 9 9 O 1.21277 * 119.99812 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00457 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.49312 * 325.00170 * 11 10 8 13 13 C 1.53033 * 109.50184 * 204.93317 * 11 10 8 14 14 C 1.53038 * 109.54211 * 178.71453 * 13 11 10 15 15 C 1.53197 * 109.33748 * 61.31755 * 14 13 11 16 16 H 1.09004 * 109.58300 * 65.16783 * 15 14 13 17 17 C 1.53001 * 109.70273 * 185.52435 * 15 14 13 18 18 N 1.46920 * 108.77537 * 305.38337 * 15 14 13 19 19 C 1.36942 * 120.63161 * 233.58499 * 18 15 14 20 20 H 1.07998 * 119.99702 * 29.04172 * 19 18 15 21 21 C 1.38813 * 120.00296 * 209.04076 * 19 18 15 22 22 N 1.31620 * 119.99657 * 15.01021 * 21 19 18 23 23 Si 1.86799 * 119.99919 * 195.00880 * 21 19 18 24 24 H 1.48504 * 109.46884 * 90.00451 * 23 21 19 25 25 H 1.48505 * 109.46896 * 209.99653 * 23 21 19 26 26 H 1.48491 * 109.47123 * 330.00216 * 23 21 19 27 27 C 1.46923 * 118.74051 * 53.60647 * 18 15 14 28 28 C 1.38237 * 119.99582 * 359.81939 * 6 5 4 29 29 C 1.38232 * 120.00245 * 359.96975 * 28 6 5 30 30 H 1.08999 * 109.46962 * 300.00210 * 1 2 3 31 31 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47005 * 59.99182 * 1 2 3 33 33 H 1.08993 * 109.47207 * 120.00511 * 2 1 3 34 34 H 1.09000 * 109.46563 * 240.00150 * 2 1 3 35 35 H 1.07995 * 119.99485 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99966 * 180.27344 * 5 4 3 37 37 H 1.08995 * 109.47136 * 29.98683 * 7 6 5 38 38 H 1.09006 * 109.46990 * 149.98243 * 7 6 5 39 39 H 0.97006 * 119.99689 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.46378 * 298.70644 * 13 11 10 41 41 H 1.09001 * 109.45985 * 58.66219 * 13 11 10 42 42 H 1.08999 * 109.47553 * 301.36681 * 14 13 11 43 43 H 1.09004 * 109.52689 * 181.29843 * 14 13 11 44 44 H 1.09003 * 109.46686 * 179.36456 * 17 15 14 45 45 H 1.09000 * 109.47184 * 299.35509 * 17 15 14 46 46 H 1.08995 * 109.47222 * 59.36314 * 17 15 14 47 47 H 0.96997 * 119.99464 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58956 * 186.60661 * 27 18 15 49 49 H 1.09000 * 109.70238 * 66.25200 * 27 18 15 50 50 H 1.07998 * 120.00178 * 180.02562 * 28 6 5 51 51 H 1.07999 * 120.00034 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7248 3.3753 -1.1970 6 6 2.9544 4.0273 0.0001 7 6 3.4558 5.4483 0.0002 8 6 4.9628 5.4494 0.0012 9 8 5.5699 4.3995 0.0023 10 7 5.6360 6.6169 0.0020 11 6 7.1009 6.6180 0.0035 12 1 7.4646 5.7765 0.5932 13 6 7.6102 7.9264 0.6122 14 6 9.1402 7.9149 0.6437 15 6 9.6763 7.8057 -0.7873 16 1 9.4085 8.7018 -1.3471 17 6 11.1986 7.6551 -0.7578 18 7 9.0770 6.6272 -1.4280 19 6 9.8672 5.6712 -2.0085 20 1 10.8645 5.4945 -1.6337 21 6 9.3864 4.9292 -3.0787 22 7 8.3108 5.3270 -3.7247 23 14 10.2657 3.3664 -3.6018 24 1 9.6979 2.2087 -2.8651 25 1 10.0845 3.1614 -5.0614 26 1 11.7136 3.4867 -3.2947 27 6 7.6139 6.4941 -1.4347 28 6 2.7237 3.3756 1.1973 29 6 2.2629 2.0724 1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5140 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.0927 1.5599 -2.1324 36 1 2.9048 3.8845 -2.1323 37 1 3.0927 5.9618 -0.8901 38 1 3.0916 5.9621 0.8899 39 1 5.1504 7.4567 0.0015 40 1 7.2662 8.7661 0.0083 41 1 7.2264 8.0283 1.6273 42 1 9.4853 7.0616 1.2275 43 1 9.5022 8.8371 1.0984 44 1 11.5746 7.5664 -1.7770 45 1 11.6411 8.5304 -0.2822 46 1 11.4644 6.7614 -0.1933 47 1 7.9751 4.8087 -4.4727 48 1 7.3373 5.5201 -1.8386 49 1 7.1760 7.2816 -2.0479 50 1 2.9026 3.8850 2.1326 51 1 2.0823 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071857505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:22 Heat of formation + Delta-G solvation = -10.891263 kcal Electronic energy + Delta-G solvation = -28567.731918 eV Core-core repulsion = 24852.520960 eV Total energy + Delta-G solvation = -3715.210958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.89225 -38.92837 -37.52146 -34.70131 -34.22378 -32.77876 -31.53726 -30.82239 -30.40785 -29.77625 -27.33240 -25.78853 -24.85492 -23.29730 -22.65491 -22.22356 -21.02137 -20.36173 -19.84234 -19.16303 -16.69438 -16.46653 -16.16770 -15.77836 -15.54738 -15.11367 -14.75324 -14.38818 -13.90249 -13.79435 -13.76631 -13.68717 -13.41515 -13.34386 -13.23156 -12.85537 -12.72659 -12.37383 -12.12264 -11.95462 -11.75035 -11.69227 -11.39604 -11.25000 -11.08949 -10.84941 -10.83311 -10.78592 -10.68852 -10.47292 -10.36932 -10.22496 -9.92263 -9.70498 -9.41672 -9.30038 -8.78355 -8.46026 -8.40302 -8.36918 -6.57706 -5.70109 -3.14596 1.40645 1.54283 3.12824 3.45207 3.51552 3.53168 3.55665 3.97966 4.57258 4.66174 4.77727 4.85239 5.01887 5.08670 5.22053 5.24282 5.33995 5.38136 5.40851 5.42565 5.49421 5.55107 5.59524 5.61426 5.66078 5.72133 5.74461 5.86766 5.99499 6.00408 6.13633 6.14958 6.17827 6.29631 6.34265 6.41808 6.48342 6.50534 6.54999 6.65427 6.68548 6.71352 6.79050 7.02539 7.07249 7.11302 7.15318 7.37478 7.79956 7.89552 8.01736 8.54279 8.75765 9.28800 9.93044 10.47993 11.37818 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.003185 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.872567 B = 8789.888803 C =10396.810940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.099 4.099 6 C -0.064 4.064 7 C -0.103 4.103 8 C 0.509 3.491 9 O -0.523 6.523 10 N -0.724 5.724 11 C 0.117 3.883 12 H 0.080 0.920 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.024 0.976 17 C -0.136 4.136 18 N -0.584 5.584 19 C -0.252 4.252 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.168 3.832 28 C -0.103 4.103 29 C -0.119 4.119 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.391 0.609 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.037 0.963 46 H 0.053 0.947 47 H 0.252 0.748 48 H 0.095 0.905 49 H 0.015 0.985 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 0.179 9.731 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.143 4.143 8 C 0.294 3.706 9 O -0.398 6.398 10 N -0.375 5.375 11 C 0.012 3.988 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.058 3.942 16 H 0.042 0.958 17 C -0.194 4.194 18 N -0.307 5.307 19 C -0.381 4.381 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.041 3.959 28 C -0.122 4.122 29 C -0.137 4.137 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.224 0.776 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.113 0.887 49 H 0.033 0.967 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.229 -0.678 9.568 17.160 hybrid contribution 0.173 -0.298 -0.379 0.512 sum -14.056 -0.976 9.189 16.822 Atomic orbital electron populations 1.21741 0.94922 1.01441 1.02128 1.20527 0.95955 0.92947 1.02784 1.19836 0.99623 0.96005 0.93298 1.20949 1.00288 0.94772 0.97425 1.21006 0.98192 0.94882 0.97596 1.19269 0.98721 0.94898 0.93511 1.20696 0.93448 0.95413 1.04759 1.20368 0.89173 0.84216 0.76853 1.90769 1.69922 1.31121 1.48017 1.46086 1.08030 1.07767 1.75587 1.21947 0.77404 0.97605 1.01852 0.90215 1.21672 0.97031 0.97344 0.99340 1.22044 0.94224 1.00600 0.99733 1.20482 0.92376 0.90597 0.90702 0.95820 1.21800 0.95853 0.99703 1.02029 1.44032 1.01271 1.20346 1.65075 1.19151 0.98636 1.11455 1.08899 0.91221 1.25063 0.98252 1.00077 0.95889 1.69997 1.24930 1.38213 1.21345 0.86331 0.79180 0.84134 0.77381 1.21344 1.21824 1.20446 1.21081 0.83180 1.02526 0.89078 1.20909 0.99075 0.94912 0.97262 1.20897 1.00722 0.94799 0.97308 0.92654 0.92610 0.92588 0.91197 0.91108 0.86298 0.86073 0.88180 0.88487 0.77609 0.92350 0.93181 0.92133 0.92744 0.91989 0.94367 0.92822 0.93801 0.88683 0.96672 0.86448 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.90 37.16 0.37 -0.81 16 2 C -0.08 -0.82 6.07 -27.88 -0.17 -0.99 16 3 C -0.09 -1.08 5.13 -104.62 -0.54 -1.62 16 4 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 5 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 6 C -0.06 -0.90 4.37 -104.63 -0.46 -1.35 16 7 C -0.10 -1.29 5.83 -29.04 -0.17 -1.46 16 8 C 0.51 8.83 7.79 -10.99 -0.09 8.75 16 9 O -0.52 -11.92 15.70 5.56 0.09 -11.83 16 10 N -0.72 -11.65 5.08 -53.70 -0.27 -11.92 16 11 C 0.12 2.30 2.60 -67.82 -0.18 2.12 16 12 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 13 C -0.12 -1.88 5.36 -26.69 -0.14 -2.02 16 14 C -0.13 -2.17 5.38 -26.61 -0.14 -2.32 16 15 C 0.17 3.42 3.49 -67.60 -0.24 3.18 16 16 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 17 C -0.14 -2.59 7.95 37.16 0.30 -2.30 16 18 N -0.58 -14.72 2.99 -164.77 -0.49 -15.21 16 19 C -0.25 -6.99 8.60 -15.06 -0.13 -7.12 16 20 H 0.07 1.89 6.21 -52.49 -0.33 1.56 16 21 C 0.01 0.17 4.96 -17.43 -0.09 0.09 16 22 N -0.90 -26.96 11.14 55.49 0.62 -26.34 16 23 Si 0.90 22.78 29.58 -169.99 -5.03 17.75 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.17 4.12 4.86 -3.71 -0.02 4.10 16 28 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 29 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.39 4.79 8.60 -40.82 -0.35 4.44 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.10 2.76 6.06 -51.93 -0.31 2.45 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -33.96 404.72 -11.11 -45.08 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.90 Total: 5.47 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.22 Total: -9.09 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.15 Total: -53.47 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.96 -11.11 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.184 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds