Wall clock time and date at job start Tue Mar 31 2020 16:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47200 * 2 1 4 4 C 1.38238 * 120.00353 * 269.72828 * 3 2 1 5 5 C 1.38229 * 119.99899 * 179.79037 * 4 3 2 6 6 C 1.38238 * 120.00349 * 0.43874 * 5 4 3 7 7 C 1.50693 * 120.00177 * 179.83186 * 6 5 4 8 8 C 1.50701 * 109.47533 * 269.98077 * 7 6 5 9 9 O 1.21277 * 119.99812 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00457 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.49312 * 325.00170 * 11 10 8 13 13 C 1.53033 * 109.50184 * 204.93317 * 11 10 8 14 14 C 1.53038 * 109.54211 * 178.71453 * 13 11 10 15 15 C 1.53197 * 109.33748 * 61.31755 * 14 13 11 16 16 H 1.09004 * 109.58300 * 65.16783 * 15 14 13 17 17 C 1.53001 * 109.70273 * 185.52435 * 15 14 13 18 18 N 1.46920 * 108.77537 * 305.38337 * 15 14 13 19 19 C 1.36942 * 120.63161 * 233.58499 * 18 15 14 20 20 H 1.07998 * 119.99702 * 29.04172 * 19 18 15 21 21 C 1.38813 * 120.00296 * 209.04076 * 19 18 15 22 22 N 1.31620 * 119.99657 * 15.01021 * 21 19 18 23 23 Si 1.86799 * 119.99919 * 195.00880 * 21 19 18 24 24 H 1.48504 * 109.46884 * 90.00451 * 23 21 19 25 25 H 1.48505 * 109.46896 * 209.99653 * 23 21 19 26 26 H 1.48491 * 109.47123 * 330.00216 * 23 21 19 27 27 C 1.46923 * 118.74051 * 53.60647 * 18 15 14 28 28 C 1.38237 * 119.99582 * 359.81939 * 6 5 4 29 29 C 1.38232 * 120.00245 * 359.96975 * 28 6 5 30 30 H 1.08999 * 109.46962 * 300.00210 * 1 2 3 31 31 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47005 * 59.99182 * 1 2 3 33 33 H 1.08993 * 109.47207 * 120.00511 * 2 1 3 34 34 H 1.09000 * 109.46563 * 240.00150 * 2 1 3 35 35 H 1.07995 * 119.99485 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99966 * 180.27344 * 5 4 3 37 37 H 1.08995 * 109.47136 * 29.98683 * 7 6 5 38 38 H 1.09006 * 109.46990 * 149.98243 * 7 6 5 39 39 H 0.97006 * 119.99689 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.46378 * 298.70644 * 13 11 10 41 41 H 1.09001 * 109.45985 * 58.66219 * 13 11 10 42 42 H 1.08999 * 109.47553 * 301.36681 * 14 13 11 43 43 H 1.09004 * 109.52689 * 181.29843 * 14 13 11 44 44 H 1.09003 * 109.46686 * 179.36456 * 17 15 14 45 45 H 1.09000 * 109.47184 * 299.35509 * 17 15 14 46 46 H 1.08995 * 109.47222 * 59.36314 * 17 15 14 47 47 H 0.96997 * 119.99464 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58956 * 186.60661 * 27 18 15 49 49 H 1.09000 * 109.70238 * 66.25200 * 27 18 15 50 50 H 1.07998 * 120.00178 * 180.02562 * 28 6 5 51 51 H 1.07999 * 120.00034 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7248 3.3753 -1.1970 6 6 2.9544 4.0273 0.0001 7 6 3.4558 5.4483 0.0002 8 6 4.9628 5.4494 0.0012 9 8 5.5699 4.3995 0.0023 10 7 5.6360 6.6169 0.0020 11 6 7.1009 6.6180 0.0035 12 1 7.4646 5.7765 0.5932 13 6 7.6102 7.9264 0.6122 14 6 9.1402 7.9149 0.6437 15 6 9.6763 7.8057 -0.7873 16 1 9.4085 8.7018 -1.3471 17 6 11.1986 7.6551 -0.7578 18 7 9.0770 6.6272 -1.4280 19 6 9.8672 5.6712 -2.0085 20 1 10.8645 5.4945 -1.6337 21 6 9.3864 4.9292 -3.0787 22 7 8.3108 5.3270 -3.7247 23 14 10.2657 3.3664 -3.6018 24 1 9.6979 2.2087 -2.8651 25 1 10.0845 3.1614 -5.0614 26 1 11.7136 3.4867 -3.2947 27 6 7.6139 6.4941 -1.4347 28 6 2.7237 3.3756 1.1973 29 6 2.2629 2.0724 1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5140 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.0927 1.5599 -2.1324 36 1 2.9048 3.8845 -2.1323 37 1 3.0927 5.9618 -0.8901 38 1 3.0916 5.9621 0.8899 39 1 5.1504 7.4567 0.0015 40 1 7.2662 8.7661 0.0083 41 1 7.2264 8.0283 1.6273 42 1 9.4853 7.0616 1.2275 43 1 9.5022 8.8371 1.0984 44 1 11.5746 7.5664 -1.7770 45 1 11.6411 8.5304 -0.2822 46 1 11.4644 6.7614 -0.1933 47 1 7.9751 4.8087 -4.4727 48 1 7.3373 5.5201 -1.8386 49 1 7.1760 7.2816 -2.0479 50 1 2.9026 3.8850 2.1326 51 1 2.0823 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071857505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:21 Heat of formation + Delta-G solvation = -30.887788 kcal Electronic energy + Delta-G solvation = -28568.599032 eV Core-core repulsion = 24852.520960 eV Total energy + Delta-G solvation = -3716.078072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15379 -40.15500 -39.11227 -36.00410 -35.47270 -34.65345 -32.73670 -31.84866 -31.81230 -31.52041 -28.43811 -27.53866 -26.52738 -24.29332 -23.90485 -23.65065 -22.37227 -21.63235 -21.25309 -20.75546 -18.34905 -18.02941 -17.48698 -17.08232 -16.78254 -16.51808 -15.96026 -15.88854 -15.57324 -15.39172 -15.03545 -14.84129 -14.63059 -14.56168 -14.41926 -14.19728 -14.10239 -13.73566 -13.53809 -13.12938 -12.94028 -12.92182 -12.74213 -12.70391 -12.57189 -12.54165 -12.28133 -12.10980 -12.06358 -11.97122 -11.72038 -11.66625 -11.65196 -11.40056 -11.13973 -10.79529 -10.55012 -10.01074 -9.79768 -9.40826 -8.62828 -7.85943 -5.31852 0.39773 0.52546 1.37904 1.43438 1.48524 1.76660 2.28831 2.49468 2.90670 3.30504 3.68074 3.70519 3.88107 3.92834 3.97685 4.09950 4.13233 4.15668 4.21080 4.30192 4.39931 4.48100 4.49575 4.57776 4.60418 4.63831 4.71306 4.73432 4.77178 4.81933 4.90051 5.00511 5.04223 5.07124 5.07272 5.17135 5.19203 5.22254 5.31828 5.36146 5.38032 5.51284 5.53468 5.55171 5.62077 5.68905 5.69549 5.72449 5.83372 6.14078 6.40851 6.72302 7.15553 7.44790 7.90119 8.38538 9.18727 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.003185 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.872567 B = 8789.888803 C =10396.810940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.083 4.083 7 C -0.091 4.091 8 C 0.504 3.496 9 O -0.585 6.585 10 N -0.710 5.710 11 C 0.132 3.868 12 H 0.045 0.955 13 C -0.107 4.107 14 C -0.119 4.119 15 C 0.153 3.847 16 H 0.022 0.978 17 C -0.130 4.130 18 N -0.604 5.604 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.054 4.054 22 N -0.932 5.932 23 Si 0.954 3.046 24 H -0.299 1.299 25 H -0.293 1.293 26 H -0.260 1.260 27 C 0.180 3.820 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.244 0.756 48 H 0.041 0.959 49 H -0.003 1.003 50 H 0.135 0.865 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.249 1.596 12.236 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.130 4.130 8 C 0.292 3.708 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.025 3.975 12 H 0.063 0.937 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.579 5.579 23 Si 0.783 3.217 24 H -0.227 1.227 25 H -0.219 1.219 26 H -0.185 1.185 27 C 0.053 3.947 28 C -0.131 4.131 29 C -0.145 4.145 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.251 0.749 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.015 0.985 50 H 0.153 0.847 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.844 0.806 12.099 19.168 hybrid contribution 0.379 -0.719 -1.140 1.400 sum -14.465 0.088 10.959 18.148 Atomic orbital electron populations 1.21706 0.93536 1.02471 1.02044 1.20587 0.97097 0.91262 1.03257 1.20194 0.98879 0.97255 0.92975 1.21193 1.00642 0.94742 0.98524 1.21191 0.99306 0.95738 0.97882 1.19513 0.99267 0.95897 0.93710 1.20715 0.89232 0.95418 1.07633 1.21283 0.91199 0.83342 0.75024 1.90744 1.71598 1.33355 1.50770 1.45907 1.06754 1.08865 1.74744 1.21441 0.79388 0.98723 0.97898 0.93664 1.21637 0.96398 0.95160 1.01250 1.21952 0.94775 1.02234 0.96828 1.20812 0.93448 0.88478 0.92480 0.95992 1.21735 0.94826 1.01259 1.00881 1.44336 1.01455 1.21718 1.65319 1.19483 0.98843 1.11600 1.08027 0.90839 1.25771 0.99410 1.02960 0.96757 1.70154 1.26594 1.39200 1.21956 0.85449 0.79134 0.80513 0.76587 1.22660 1.21931 1.18475 1.20770 0.83403 0.98766 0.91790 1.21227 0.98775 0.95447 0.97682 1.21255 1.00153 0.94810 0.98299 0.92404 0.91016 0.93012 0.90280 0.91090 0.85398 0.86646 0.86174 0.84427 0.74868 0.90762 0.89580 0.93165 0.88577 0.94358 0.90205 0.93672 0.94741 0.94049 0.98476 0.84666 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.90 71.98 0.71 -1.35 16 2 C -0.08 -1.56 6.07 29.85 0.18 -1.38 16 3 C -0.09 -2.27 5.13 -19.86 -0.10 -2.37 16 4 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 5 C -0.12 -3.67 9.70 22.27 0.22 -3.45 16 6 C -0.08 -2.34 4.37 -19.87 -0.09 -2.42 16 7 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 8 C 0.50 17.52 7.79 87.66 0.68 18.20 16 9 O -0.59 -27.83 15.70 -3.02 -0.05 -27.88 16 10 N -0.71 -22.21 5.08 -442.19 -2.25 -24.46 16 11 C 0.13 5.16 2.60 45.07 0.12 5.27 16 12 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 13 C -0.11 -3.12 5.36 30.62 0.16 -2.95 16 14 C -0.12 -3.70 5.38 30.67 0.16 -3.54 16 15 C 0.15 6.13 3.49 44.98 0.16 6.29 16 16 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 17 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 18 N -0.60 -31.06 2.99 -675.22 -2.02 -33.08 16 19 C -0.25 -14.21 8.60 84.03 0.72 -13.49 16 20 H 0.07 4.05 6.21 -2.91 -0.02 4.03 16 21 C -0.05 -3.22 4.96 84.86 0.42 -2.79 16 22 N -0.93 -58.71 11.14 21.65 0.24 -58.47 16 23 Si 0.95 48.55 29.58 68.60 2.03 50.58 16 24 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 25 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 26 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.18 9.12 4.86 86.36 0.42 9.54 16 28 C -0.11 -2.89 9.70 22.27 0.22 -2.68 16 29 C -0.13 -3.04 9.70 22.27 0.22 -2.83 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 1.30 8.08 -2.39 -0.02 1.29 16 34 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 35 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.12 2.35 8.08 -2.39 -0.02 2.33 16 38 H 0.14 2.11 8.09 -2.38 -0.02 2.09 16 39 H 0.41 9.07 8.60 -92.70 -0.80 8.27 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.04 1.69 7.44 -2.39 -0.02 1.68 16 47 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.04 2.55 6.06 -2.39 -0.01 2.53 16 49 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 51 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -80.25 404.72 3.22 -77.03 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.10 Total: 25.76 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.16 Total: -9.49 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -4.02 Total: -116.01 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -80.25 3.22 -77.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.145 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds