Wall clock time and date at job start Tue Mar 31 2020 16:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38231 * 120.00057 * 269.73097 * 3 2 1 5 5 C 1.38232 * 119.99926 * 179.79237 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.43435 * 5 4 3 7 7 C 1.50696 * 119.99994 * 179.83835 * 6 5 4 8 8 C 1.50703 * 109.46927 * 269.97343 * 7 6 5 9 9 O 1.21271 * 120.00135 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99808 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99769 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.49707 * 325.06366 * 11 10 8 13 13 C 1.53041 * 109.49572 * 204.99956 * 11 10 8 14 14 C 1.53037 * 109.54120 * 301.41514 * 13 11 10 15 15 C 1.53194 * 109.31158 * 298.63350 * 14 13 11 16 16 H 1.08997 * 109.59054 * 294.84941 * 15 14 13 17 17 C 1.53001 * 109.58678 * 174.42050 * 15 14 13 18 18 N 1.46928 * 108.77436 * 54.63331 * 15 14 13 19 19 C 1.36939 * 120.63209 * 126.41199 * 18 15 14 20 20 H 1.08008 * 119.99800 * 330.18335 * 19 18 15 21 21 C 1.38812 * 120.00316 * 150.17782 * 19 18 15 22 22 N 1.31623 * 119.99636 * 344.48784 * 21 19 18 23 23 Si 1.86802 * 119.99930 * 164.48302 * 21 19 18 24 24 H 1.48500 * 109.46724 * 60.00553 * 23 21 19 25 25 H 1.48505 * 109.46697 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47369 * 300.00195 * 23 21 19 27 27 C 1.46926 * 118.74094 * 306.39324 * 18 15 14 28 28 C 1.38239 * 119.99861 * 359.81292 * 6 5 4 29 29 C 1.38234 * 119.99660 * 90.00045 * 3 2 1 30 30 H 1.09004 * 109.47319 * 59.99820 * 1 2 3 31 31 H 1.08999 * 109.47194 * 299.99936 * 1 2 3 32 32 H 1.09003 * 109.47488 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46487 * 119.99976 * 2 1 3 34 34 H 1.09001 * 109.46817 * 240.00425 * 2 1 3 35 35 H 1.08003 * 119.99868 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00215 * 180.27044 * 5 4 3 37 37 H 1.08998 * 109.47291 * 29.97623 * 7 6 5 38 38 H 1.09006 * 109.47032 * 149.97860 * 7 6 5 39 39 H 0.96998 * 119.99759 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46134 * 61.43406 * 13 11 10 41 41 H 1.09001 * 109.46183 * 181.40326 * 13 11 10 42 42 H 1.08998 * 109.49974 * 58.58569 * 14 13 11 43 43 H 1.08997 * 109.50021 * 178.68503 * 14 13 11 44 44 H 1.08997 * 109.47215 * 60.00344 * 17 15 14 45 45 H 1.09004 * 109.47200 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.47350 * 299.99821 * 17 15 14 47 47 H 0.96998 * 119.99665 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.58311 * 293.82186 * 27 18 15 49 49 H 1.08991 * 109.58928 * 173.39634 * 27 18 15 50 50 H 1.07991 * 120.00094 * 180.02562 * 28 6 5 51 51 H 1.08004 * 120.00328 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7247 3.3753 -1.1971 6 6 2.9543 4.0273 0.0001 7 6 3.4556 5.4484 0.0001 8 6 4.9626 5.4494 0.0012 9 8 5.5697 4.3996 0.0015 10 7 5.6357 6.6171 0.0019 11 6 7.1007 6.6181 0.0025 12 1 7.4648 5.7758 0.5907 13 6 7.6103 7.9257 0.6129 14 6 7.0720 9.1105 -0.1924 15 6 7.5837 9.0179 -1.6334 16 1 8.6675 9.1329 -1.6445 17 6 6.9395 10.1190 -2.4781 18 7 7.2223 7.7028 -2.1799 19 6 6.5352 7.6026 -3.3602 20 1 5.8527 8.3858 -3.6559 21 6 6.7157 6.4945 -4.1766 22 7 7.7473 5.6991 -3.9877 23 14 5.4946 6.1322 -5.5430 24 1 5.4596 7.2744 -6.4912 25 1 5.9095 4.9020 -6.2641 26 1 4.1439 5.9316 -4.9595 27 6 7.6126 6.4972 -1.4363 28 6 2.7234 3.3757 1.1973 29 6 2.2627 2.0724 1.1972 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0926 1.5598 -2.1324 36 1 2.9047 3.8844 -2.1323 37 1 3.0926 5.9618 -0.8903 38 1 3.0913 5.9622 0.8898 39 1 5.1501 7.4568 0.0021 40 1 7.2679 8.0025 1.6448 41 1 8.7001 7.9365 0.5902 42 1 5.9823 9.0863 -0.1910 43 1 7.4163 10.0421 0.2567 44 1 7.1984 11.0933 -2.0637 45 1 7.3044 10.0511 -3.5030 46 1 5.8564 9.9967 -2.4697 47 1 7.8733 4.9246 -4.5580 48 1 8.6988 6.4067 -1.4313 49 1 7.1728 5.6186 -1.9080 50 1 2.9024 3.8852 2.1325 51 1 2.0823 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071857506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:25 Heat of formation + Delta-G solvation = -9.390890 kcal Electronic energy + Delta-G solvation = -29194.530078 eV Core-core repulsion = 25479.384182 eV Total energy + Delta-G solvation = -3715.145897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.82443 -38.95323 -37.46595 -34.58433 -33.98551 -32.69877 -31.47924 -30.74871 -30.34632 -29.84110 -27.19038 -26.00550 -24.90528 -23.30816 -22.57713 -22.15148 -21.04852 -20.40137 -19.95867 -18.68475 -16.81924 -16.34454 -15.96947 -15.70197 -15.43665 -15.04938 -14.69389 -14.28102 -13.99385 -13.84728 -13.73704 -13.63227 -13.39364 -13.21405 -13.09030 -12.87134 -12.72510 -12.49812 -12.09177 -11.90315 -11.64755 -11.61830 -11.21884 -11.17573 -11.14694 -10.93540 -10.87906 -10.75039 -10.71919 -10.68388 -10.37873 -10.31856 -9.95094 -9.51728 -9.43934 -9.23984 -8.71410 -8.43101 -8.32442 -8.27446 -6.56613 -5.72652 -3.17201 1.48411 1.61233 3.28474 3.38343 3.44097 3.46217 3.71606 4.11508 4.51427 4.72944 4.83274 4.95764 5.09882 5.15290 5.27023 5.32998 5.37339 5.37974 5.43995 5.47489 5.52906 5.55121 5.60836 5.62232 5.69844 5.75636 5.77981 5.93469 6.03228 6.04026 6.13520 6.17195 6.22841 6.25428 6.34691 6.36412 6.46293 6.55210 6.58134 6.63010 6.73342 6.74880 6.81498 6.94668 7.06755 7.15411 7.18820 7.44683 7.72722 7.85544 8.19925 8.51897 8.91356 9.25976 9.90583 10.47460 11.35243 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003667 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.457490 B = 7633.248011 C = 9037.435863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.059 4.059 7 C -0.105 4.105 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.703 5.703 11 C 0.119 3.881 12 H 0.073 0.927 13 C -0.118 4.118 14 C -0.130 4.130 15 C 0.165 3.835 16 H 0.024 0.976 17 C -0.135 4.135 18 N -0.582 5.582 19 C -0.252 4.252 20 H 0.067 0.933 21 C 0.008 3.992 22 N -0.898 5.898 23 Si 0.895 3.105 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.163 3.837 28 C -0.104 4.104 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.394 0.606 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.036 0.964 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.023 0.977 49 H 0.095 0.905 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -1.697 11.218 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.116 4.116 6 C -0.060 4.060 7 C -0.145 4.145 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.353 5.353 11 C 0.013 3.987 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.169 4.169 15 C 0.058 3.942 16 H 0.041 0.959 17 C -0.192 4.192 18 N -0.305 5.305 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.541 5.541 23 Si 0.725 3.275 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.037 3.963 28 C -0.122 4.122 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.113 0.887 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.667 -2.598 11.098 15.611 hybrid contribution -0.663 0.225 -0.858 1.107 sum -11.330 -2.374 10.240 15.455 Atomic orbital electron populations 1.21744 0.94972 1.01386 1.02157 1.20515 0.95934 0.92987 1.02671 1.19810 0.99860 0.95987 0.93292 1.20943 1.00328 0.94781 0.97382 1.21050 0.97969 0.94839 0.97774 1.19290 0.98342 0.94924 0.93411 1.20690 0.93784 0.95235 1.04762 1.20230 0.89078 0.84149 0.76540 1.90695 1.70042 1.31341 1.49553 1.45838 1.07448 1.07764 1.74285 1.21728 0.79468 0.96692 1.00766 0.90880 1.21685 1.00904 0.95195 0.97848 1.22060 1.00193 0.96546 0.98107 1.20461 0.95733 0.87469 0.90515 0.95872 1.21788 1.00755 0.95993 1.00711 1.44020 1.65325 0.98698 1.22462 1.19017 1.17014 1.06071 0.96080 0.91587 1.25059 0.96662 0.99948 0.97472 1.69981 1.27007 1.16835 1.40319 0.86494 0.81320 0.77480 0.82187 1.21001 1.21704 1.21158 1.21149 0.96341 0.92036 0.86805 1.20897 0.99250 0.94877 0.97215 1.20874 1.00896 0.94818 0.97217 0.92584 0.92653 0.92653 0.91253 0.91174 0.86389 0.86065 0.88041 0.88709 0.77180 0.93132 0.91266 0.92660 0.92970 0.94482 0.92098 0.92962 0.93638 0.95906 0.88726 0.86502 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.08 -0.84 6.07 -27.88 -0.17 -1.01 16 3 C -0.09 -1.16 5.13 -104.63 -0.54 -1.70 16 4 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 5 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 6 C -0.06 -0.91 4.37 -104.62 -0.46 -1.37 16 7 C -0.10 -1.51 5.83 -29.04 -0.17 -1.68 16 8 C 0.51 9.56 7.79 -10.98 -0.09 9.47 16 9 O -0.54 -12.31 15.70 5.56 0.09 -12.22 16 10 N -0.70 -12.31 4.92 -53.69 -0.26 -12.57 16 11 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 12 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 13 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 14 C -0.13 -2.03 5.21 -26.61 -0.14 -2.17 16 15 C 0.16 3.22 3.50 -67.60 -0.24 2.98 16 16 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 17 C -0.13 -2.41 7.95 37.16 0.30 -2.12 16 18 N -0.58 -13.70 2.90 -164.78 -0.48 -14.18 16 19 C -0.25 -6.58 8.58 -15.06 -0.13 -6.71 16 20 H 0.07 1.68 6.23 -52.48 -0.33 1.35 16 21 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 22 N -0.90 -26.40 11.23 55.49 0.62 -25.78 16 23 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.16 3.90 4.88 -3.71 -0.02 3.88 16 28 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 29 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 38 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.39 6.06 6.77 -40.82 -0.28 5.78 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 46 H 0.05 0.93 7.40 -51.93 -0.38 0.55 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.09 2.68 6.14 -51.93 -0.32 2.36 16 50 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 51 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -31.86 401.34 -10.99 -42.85 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.74 Total: 7.95 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.24 Total: -8.87 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.12 Total: -52.54 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.86 -10.99 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.460 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds