Wall clock time and date at job start Tue Mar 31 2020 16:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38231 * 120.00057 * 269.73097 * 3 2 1 5 5 C 1.38232 * 119.99926 * 179.79237 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.43435 * 5 4 3 7 7 C 1.50696 * 119.99994 * 179.83835 * 6 5 4 8 8 C 1.50703 * 109.46927 * 269.97343 * 7 6 5 9 9 O 1.21271 * 120.00135 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99808 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99769 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.49707 * 325.06366 * 11 10 8 13 13 C 1.53041 * 109.49572 * 204.99956 * 11 10 8 14 14 C 1.53037 * 109.54120 * 301.41514 * 13 11 10 15 15 C 1.53194 * 109.31158 * 298.63350 * 14 13 11 16 16 H 1.08997 * 109.59054 * 294.84941 * 15 14 13 17 17 C 1.53001 * 109.58678 * 174.42050 * 15 14 13 18 18 N 1.46928 * 108.77436 * 54.63331 * 15 14 13 19 19 C 1.36939 * 120.63209 * 126.41199 * 18 15 14 20 20 H 1.08008 * 119.99800 * 330.18335 * 19 18 15 21 21 C 1.38812 * 120.00316 * 150.17782 * 19 18 15 22 22 N 1.31623 * 119.99636 * 344.48784 * 21 19 18 23 23 Si 1.86802 * 119.99930 * 164.48302 * 21 19 18 24 24 H 1.48500 * 109.46724 * 60.00553 * 23 21 19 25 25 H 1.48505 * 109.46697 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47369 * 300.00195 * 23 21 19 27 27 C 1.46926 * 118.74094 * 306.39324 * 18 15 14 28 28 C 1.38239 * 119.99861 * 359.81292 * 6 5 4 29 29 C 1.38234 * 119.99660 * 90.00045 * 3 2 1 30 30 H 1.09004 * 109.47319 * 59.99820 * 1 2 3 31 31 H 1.08999 * 109.47194 * 299.99936 * 1 2 3 32 32 H 1.09003 * 109.47488 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46487 * 119.99976 * 2 1 3 34 34 H 1.09001 * 109.46817 * 240.00425 * 2 1 3 35 35 H 1.08003 * 119.99868 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00215 * 180.27044 * 5 4 3 37 37 H 1.08998 * 109.47291 * 29.97623 * 7 6 5 38 38 H 1.09006 * 109.47032 * 149.97860 * 7 6 5 39 39 H 0.96998 * 119.99759 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46134 * 61.43406 * 13 11 10 41 41 H 1.09001 * 109.46183 * 181.40326 * 13 11 10 42 42 H 1.08998 * 109.49974 * 58.58569 * 14 13 11 43 43 H 1.08997 * 109.50021 * 178.68503 * 14 13 11 44 44 H 1.08997 * 109.47215 * 60.00344 * 17 15 14 45 45 H 1.09004 * 109.47200 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.47350 * 299.99821 * 17 15 14 47 47 H 0.96998 * 119.99665 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.58311 * 293.82186 * 27 18 15 49 49 H 1.08991 * 109.58928 * 173.39634 * 27 18 15 50 50 H 1.07991 * 120.00094 * 180.02562 * 28 6 5 51 51 H 1.08004 * 120.00328 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7247 3.3753 -1.1971 6 6 2.9543 4.0273 0.0001 7 6 3.4556 5.4484 0.0001 8 6 4.9626 5.4494 0.0012 9 8 5.5697 4.3996 0.0015 10 7 5.6357 6.6171 0.0019 11 6 7.1007 6.6181 0.0025 12 1 7.4648 5.7758 0.5907 13 6 7.6103 7.9257 0.6129 14 6 7.0720 9.1105 -0.1924 15 6 7.5837 9.0179 -1.6334 16 1 8.6675 9.1329 -1.6445 17 6 6.9395 10.1190 -2.4781 18 7 7.2223 7.7028 -2.1799 19 6 6.5352 7.6026 -3.3602 20 1 5.8527 8.3858 -3.6559 21 6 6.7157 6.4945 -4.1766 22 7 7.7473 5.6991 -3.9877 23 14 5.4946 6.1322 -5.5430 24 1 5.4596 7.2744 -6.4912 25 1 5.9095 4.9020 -6.2641 26 1 4.1439 5.9316 -4.9595 27 6 7.6126 6.4972 -1.4363 28 6 2.7234 3.3757 1.1973 29 6 2.2627 2.0724 1.1972 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0926 1.5598 -2.1324 36 1 2.9047 3.8844 -2.1323 37 1 3.0926 5.9618 -0.8903 38 1 3.0913 5.9622 0.8898 39 1 5.1501 7.4568 0.0021 40 1 7.2679 8.0025 1.6448 41 1 8.7001 7.9365 0.5902 42 1 5.9823 9.0863 -0.1910 43 1 7.4163 10.0421 0.2567 44 1 7.1984 11.0933 -2.0637 45 1 7.3044 10.0511 -3.5030 46 1 5.8564 9.9967 -2.4697 47 1 7.8733 4.9246 -4.5580 48 1 8.6988 6.4067 -1.4313 49 1 7.1728 5.6186 -1.9080 50 1 2.9024 3.8852 2.1325 51 1 2.0823 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071857506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:24 Heat of formation + Delta-G solvation = -26.980410 kcal Electronic energy + Delta-G solvation = -29195.292817 eV Core-core repulsion = 25479.384182 eV Total energy + Delta-G solvation = -3715.908635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17169 -40.21490 -39.01426 -35.79122 -35.44311 -34.47804 -32.72820 -31.81897 -31.79025 -31.51102 -28.34856 -27.63198 -26.62398 -24.28196 -23.85409 -23.64948 -22.34670 -21.87255 -21.18256 -20.33492 -18.32941 -18.04972 -17.26063 -17.03863 -16.79307 -16.40673 -15.97269 -15.86846 -15.58335 -15.41462 -14.93209 -14.73198 -14.60545 -14.53755 -14.43168 -14.17545 -14.02995 -13.70989 -13.67136 -12.99420 -12.94492 -12.91380 -12.79593 -12.59298 -12.55105 -12.53292 -12.40604 -12.12720 -12.07602 -12.06200 -11.71061 -11.66280 -11.56324 -11.19959 -11.03914 -10.79235 -10.50482 -9.87084 -9.80204 -9.40562 -8.55629 -7.81283 -5.26943 0.40231 0.51916 1.40384 1.42942 1.48457 1.83214 2.42537 2.50694 2.93313 3.34663 3.64645 3.72033 3.87751 3.94114 4.02259 4.11893 4.13117 4.16951 4.21816 4.24455 4.46351 4.50210 4.52406 4.57904 4.60344 4.67410 4.73912 4.75345 4.77579 4.84664 4.98081 5.04388 5.05977 5.07643 5.11093 5.13401 5.19080 5.21934 5.28936 5.34775 5.38253 5.51339 5.58490 5.63140 5.70207 5.72122 5.72175 5.75303 5.80707 6.13883 6.45016 6.78967 7.19683 7.49498 7.94321 8.45647 9.23714 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003667 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.457490 B = 7633.248011 C = 9037.435863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.095 4.095 8 C 0.508 3.492 9 O -0.589 6.589 10 N -0.693 5.693 11 C 0.130 3.870 12 H 0.059 0.941 13 C -0.110 4.110 14 C -0.118 4.118 15 C 0.153 3.847 16 H 0.010 0.990 17 C -0.128 4.128 18 N -0.593 5.593 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.948 3.052 24 H -0.271 1.271 25 H -0.306 1.306 26 H -0.278 1.278 27 C 0.174 3.826 28 C -0.110 4.110 29 C -0.123 4.123 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.408 0.592 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.241 0.759 48 H -0.010 1.010 49 H 0.044 0.956 50 H 0.138 0.862 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 0.116 13.820 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.080 4.080 7 C -0.134 4.134 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.344 5.344 11 C 0.023 3.977 12 H 0.077 0.923 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.047 3.953 16 H 0.027 0.973 17 C -0.185 4.185 18 N -0.317 5.317 19 C -0.368 4.368 20 H 0.095 0.905 21 C -0.248 4.248 22 N -0.585 5.585 23 Si 0.777 3.223 24 H -0.196 1.196 25 H -0.233 1.233 26 H -0.205 1.205 27 C 0.047 3.953 28 C -0.128 4.128 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.245 0.755 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.008 0.992 49 H 0.062 0.938 50 H 0.156 0.844 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.914 -0.707 13.715 18.852 hybrid contribution 0.080 -0.324 -1.651 1.684 sum -12.834 -1.031 12.064 17.644 Atomic orbital electron populations 1.21714 0.93664 1.02485 1.01981 1.20583 0.96981 0.91116 1.03379 1.20183 0.98844 0.97322 0.92801 1.21148 1.00684 0.94484 0.98645 1.21125 0.99783 0.95934 0.97637 1.19475 0.99139 0.95624 0.93752 1.20694 0.90306 0.95528 1.06887 1.21019 0.90843 0.83482 0.75120 1.90673 1.71446 1.33139 1.51709 1.45744 1.06730 1.08347 1.73585 1.21394 0.80549 0.98644 0.97109 0.92272 1.21652 1.00877 0.92795 0.99438 1.21945 1.00813 0.98036 0.94855 1.20787 0.95390 0.85651 0.93448 0.97261 1.21717 1.00500 0.97252 0.99029 1.44234 1.65191 1.00245 1.21997 1.19389 1.16016 1.05277 0.96075 0.90482 1.25747 0.98253 1.00713 1.00101 1.70172 1.29287 1.17388 1.41627 0.85622 0.79643 0.76867 0.80133 1.19636 1.23332 1.20455 1.20810 0.94121 0.90699 0.89714 1.21211 0.98717 0.95450 0.97429 1.21269 0.99869 0.94650 0.98318 0.93275 0.92327 0.90925 0.89926 0.91122 0.85661 0.87903 0.87600 0.84578 0.75502 0.89512 0.91364 0.91445 0.89253 0.90629 0.94844 0.92733 0.95007 0.99204 0.93759 0.84387 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.08 -1.54 6.07 29.85 0.18 -1.36 16 3 C -0.09 -2.29 5.13 -19.87 -0.10 -2.39 16 4 C -0.13 -3.85 9.70 22.27 0.22 -3.63 16 5 C -0.13 -4.20 9.70 22.27 0.22 -3.99 16 6 C -0.08 -2.43 4.37 -19.86 -0.09 -2.51 16 7 C -0.09 -2.62 5.83 29.10 0.17 -2.45 16 8 C 0.51 18.81 7.79 87.66 0.68 19.50 16 9 O -0.59 -27.85 15.70 -3.00 -0.05 -27.90 16 10 N -0.69 -23.48 4.92 -442.18 -2.17 -25.65 16 11 C 0.13 4.93 2.81 45.07 0.13 5.05 16 12 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 13 C -0.11 -3.13 5.59 30.62 0.17 -2.96 16 14 C -0.12 -3.21 5.21 30.67 0.16 -3.05 16 15 C 0.15 5.70 3.50 44.97 0.16 5.85 16 16 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 17 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 18 N -0.59 -28.20 2.90 -675.23 -1.96 -30.16 16 19 C -0.24 -12.51 8.58 84.03 0.72 -11.79 16 20 H 0.08 3.86 6.23 -2.91 -0.02 3.84 16 21 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 22 N -0.94 -58.53 11.23 21.65 0.24 -58.28 16 23 Si 0.95 46.32 29.58 68.60 2.03 48.35 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 C 0.17 8.67 4.88 86.36 0.42 9.09 16 28 C -0.11 -2.90 9.70 22.27 0.22 -2.68 16 29 C -0.12 -2.96 9.70 22.27 0.22 -2.75 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 34 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 35 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.10 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.11 2.83 8.09 -2.39 -0.02 2.81 16 38 H 0.14 2.58 8.09 -2.38 -0.02 2.56 16 39 H 0.41 11.37 6.77 -92.71 -0.63 10.75 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.03 1.27 7.67 -2.38 -0.02 1.25 16 46 H 0.05 1.77 7.40 -2.39 -0.02 1.76 16 47 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 48 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 49 H 0.04 2.67 6.14 -2.39 -0.01 2.65 16 50 H 0.14 2.94 8.06 -2.92 -0.02 2.92 16 51 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -75.23 401.34 3.54 -71.70 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.27 Total: 29.75 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.17 Total: -7.81 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.89 Total: -114.10 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.23 3.54 -71.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds