Wall clock time and date at job start Tue Mar 31 2020 16:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46910 * 2 1 4 4 C 1.38228 * 119.99713 * 90.00610 * 3 2 1 5 5 C 1.38244 * 119.99971 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99663 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99937 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47081 * 89.99639 * 7 6 5 9 9 O 1.21280 * 119.99981 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99995 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00082 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.49872 * 35.06192 * 11 10 8 13 13 C 1.53033 * 109.49864 * 155.16394 * 11 10 8 14 14 C 1.53078 * 109.65868 * 181.25033 * 13 11 10 15 15 C 1.53190 * 109.29426 * 298.84822 * 14 13 11 16 16 H 1.09005 * 109.58506 * 294.55851 * 15 14 13 17 17 C 1.53002 * 109.58283 * 174.27982 * 15 14 13 18 18 N 1.46924 * 108.89596 * 54.42198 * 15 14 13 19 19 C 1.36932 * 120.63138 * 126.47957 * 18 15 14 20 20 H 1.07992 * 120.00784 * 330.16296 * 19 18 15 21 21 C 1.38824 * 119.99630 * 150.15548 * 19 18 15 22 22 N 1.31614 * 120.00040 * 344.49578 * 21 19 18 23 23 Si 1.86801 * 119.99688 * 164.49847 * 21 19 18 24 24 H 1.48493 * 109.47154 * 60.00015 * 23 21 19 25 25 H 1.48504 * 109.46999 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46930 * 300.00077 * 23 21 19 27 27 C 1.46927 * 118.73587 * 306.46331 * 18 15 14 28 28 C 1.38241 * 120.00128 * 0.24887 * 6 5 4 29 29 C 1.38234 * 119.99702 * 359.47620 * 28 6 5 30 30 H 1.09004 * 109.46445 * 299.99888 * 1 2 3 31 31 H 1.08995 * 109.47049 * 59.99490 * 1 2 3 32 32 H 1.08997 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47054 * 240.00494 * 2 1 3 34 34 H 1.08996 * 109.47553 * 119.99934 * 2 1 3 35 35 H 1.08001 * 120.00785 * 359.97438 * 4 3 2 36 36 H 1.07996 * 119.99984 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47206 * 329.99805 * 7 6 5 38 38 H 1.08999 * 109.47640 * 209.99571 * 7 6 5 39 39 H 0.97007 * 119.99666 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.46167 * 301.33796 * 13 11 10 41 41 H 1.09004 * 109.46173 * 61.30971 * 13 11 10 42 42 H 1.09000 * 109.61983 * 178.82740 * 14 13 11 43 43 H 1.09000 * 109.38659 * 58.72101 * 14 13 11 44 44 H 1.08996 * 109.47379 * 300.27584 * 17 15 14 45 45 H 1.09002 * 109.46747 * 180.28072 * 17 15 14 46 46 H 1.08995 * 109.47334 * 60.28492 * 17 15 14 47 47 H 0.97001 * 120.00145 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58871 * 173.39411 * 27 18 15 49 49 H 1.09003 * 109.58535 * 293.81612 * 27 18 15 50 50 H 1.07998 * 120.00231 * 179.72854 * 28 6 5 51 51 H 1.08005 * 119.99789 * 180.27851 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3756 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 6 4.9636 5.4482 0.0000 9 8 5.5701 4.3979 -0.0006 10 7 5.6375 6.6154 -0.0006 11 6 7.1025 6.6155 -0.0012 12 1 7.4661 5.7743 -0.5914 13 6 7.6130 7.9245 -0.6076 14 6 9.1434 7.9153 -0.6387 15 6 9.6780 7.8008 0.7923 16 1 9.4126 8.6963 1.3543 17 6 11.2000 7.6477 0.7604 18 7 9.0777 6.6220 1.4317 19 6 9.8669 5.6650 2.0116 20 1 10.8595 5.4791 1.6291 21 6 9.3910 4.9339 3.0915 22 7 8.3299 5.3485 3.7505 23 14 10.2567 3.3616 3.6091 24 1 11.6628 3.6683 3.9752 25 1 9.5570 2.7735 4.7795 26 1 10.2382 2.3929 2.4837 27 6 7.6144 6.4898 1.4372 28 6 2.7184 3.3776 -1.1972 29 6 2.2626 2.0726 -1.1972 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0825 1.5635 2.1325 36 1 2.9037 3.8848 2.1325 37 1 3.0933 5.9619 0.8900 38 1 3.0932 5.9620 -0.8899 39 1 5.1524 7.4555 -0.0005 40 1 7.2299 8.0282 -1.6228 41 1 7.2693 8.7634 -0.0024 42 1 9.5059 8.8391 -1.0897 43 1 9.4883 7.0637 -1.2251 44 1 11.4634 6.7518 0.1982 45 1 11.5779 7.5614 1.7792 46 1 11.6431 8.5207 0.2814 47 1 7.9971 4.8375 4.5049 48 1 7.3370 5.5157 1.8400 49 1 7.1786 7.2786 2.0504 50 1 2.8941 3.8882 -2.1325 51 1 2.0826 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071857508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:27 Heat of formation + Delta-G solvation = -31.152553 kcal Electronic energy + Delta-G solvation = -28562.154844 eV Core-core repulsion = 24846.065291 eV Total energy + Delta-G solvation = -3716.089553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15284 -40.15383 -39.10933 -36.00301 -35.47257 -34.64903 -32.73450 -31.85416 -31.81076 -31.52633 -28.43656 -27.53364 -26.52247 -24.29552 -23.90890 -23.64990 -22.37143 -21.63252 -21.25268 -20.75451 -18.34413 -18.02871 -17.48527 -17.07757 -16.78124 -16.51693 -15.95917 -15.89959 -15.57628 -15.39246 -15.03081 -14.84307 -14.62942 -14.56179 -14.41715 -14.19628 -14.11124 -13.73550 -13.52959 -13.12550 -12.94070 -12.91415 -12.74943 -12.68488 -12.57118 -12.54039 -12.30142 -12.13611 -12.06656 -11.98072 -11.71947 -11.66560 -11.65396 -11.40110 -11.13679 -10.79648 -10.54123 -10.01168 -9.79664 -9.40774 -8.61766 -7.86392 -5.32392 0.39926 0.52565 1.37982 1.44018 1.47654 1.76496 2.28654 2.49530 2.90725 3.30182 3.68119 3.70529 3.88224 3.92822 3.97573 4.10070 4.13280 4.15492 4.21103 4.30060 4.39813 4.48171 4.49689 4.57771 4.60474 4.63575 4.71400 4.73438 4.77231 4.81783 4.90057 5.00511 5.04315 5.07166 5.07323 5.17164 5.19232 5.22327 5.31683 5.35948 5.38003 5.51258 5.53197 5.54595 5.61503 5.68973 5.69617 5.72560 5.82092 6.14155 6.40812 6.72143 7.15564 7.44581 7.89965 8.39076 9.18371 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.003183 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.433210 B = 8794.656084 C =10401.074932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.083 4.083 7 C -0.091 4.091 8 C 0.504 3.496 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.132 3.868 12 H 0.045 0.955 13 C -0.107 4.107 14 C -0.119 4.119 15 C 0.153 3.847 16 H 0.022 0.978 17 C -0.129 4.129 18 N -0.604 5.604 19 C -0.252 4.252 20 H 0.073 0.927 21 C -0.052 4.052 22 N -0.932 5.932 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.288 1.288 27 C 0.181 3.819 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.415 0.585 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.244 0.756 48 H 0.038 0.962 49 H -0.002 1.002 50 H 0.136 0.864 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.375 1.508 -12.248 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.130 4.130 8 C 0.292 3.708 9 O -0.465 6.465 10 N -0.363 5.363 11 C 0.026 3.974 12 H 0.064 0.936 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.328 5.328 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.578 5.578 23 Si 0.783 3.217 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.215 1.215 27 C 0.054 3.946 28 C -0.131 4.131 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.251 0.749 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.016 0.984 50 H 0.153 0.847 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.983 0.716 -12.105 19.275 hybrid contribution 0.403 -0.712 1.135 1.399 sum -14.580 0.004 -10.970 18.246 Atomic orbital electron populations 1.21706 0.93543 1.02470 1.02042 1.20589 0.97086 0.91269 1.03259 1.20193 0.98887 0.97250 0.92979 1.21193 1.00627 0.94748 0.98518 1.21193 0.99291 0.95764 0.97879 1.19512 0.99253 0.95904 0.93714 1.20717 0.89223 0.95425 1.07635 1.21288 0.91196 0.83342 0.75018 1.90744 1.71634 1.33309 1.50769 1.45910 1.06738 1.08879 1.74748 1.21434 0.79396 0.98738 0.97867 0.93634 1.21639 0.96403 0.95140 1.01269 1.21961 0.94778 1.02239 0.96810 1.20807 0.93441 0.88479 0.92497 0.96038 1.21734 0.94855 1.01243 1.00851 1.44311 1.01418 1.21652 1.65400 1.19414 0.99320 1.11916 1.07581 0.90992 1.25783 0.99467 1.02904 0.96571 1.70147 1.27411 1.39178 1.21046 0.85537 0.78640 0.80717 0.76844 1.19161 1.22246 1.21483 1.20750 0.83459 0.98548 0.91824 1.21229 0.98794 0.95439 0.97675 1.21257 1.00178 0.94778 0.98299 0.93010 0.92406 0.91020 0.90280 0.91086 0.85392 0.86645 0.86172 0.84427 0.74859 0.89563 0.90774 0.88541 0.93170 0.93675 0.94404 0.90216 0.94700 0.94327 0.98428 0.84653 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.08 -1.55 6.06 29.85 0.18 -1.37 16 3 C -0.09 -2.26 5.13 -19.86 -0.10 -2.37 16 4 C -0.13 -3.61 9.70 22.27 0.22 -3.40 16 5 C -0.12 -3.65 9.70 22.27 0.22 -3.44 16 6 C -0.08 -2.32 4.37 -19.87 -0.09 -2.41 16 7 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 8 C 0.50 17.46 7.79 87.66 0.68 18.14 16 9 O -0.59 -27.73 15.70 -3.03 -0.05 -27.77 16 10 N -0.71 -22.15 5.08 -442.17 -2.25 -24.39 16 11 C 0.13 5.16 2.61 45.07 0.12 5.27 16 12 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 13 C -0.11 -3.12 5.35 30.63 0.16 -2.95 16 14 C -0.12 -3.71 5.38 30.68 0.17 -3.54 16 15 C 0.15 6.15 3.49 44.97 0.16 6.31 16 16 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 17 C -0.13 -4.73 7.95 71.98 0.57 -4.16 16 18 N -0.60 -31.08 2.99 -675.22 -2.02 -33.10 16 19 C -0.25 -14.40 8.57 84.04 0.72 -13.68 16 20 H 0.07 3.97 6.24 -2.91 -0.02 3.95 16 21 C -0.05 -3.10 4.94 84.87 0.42 -2.68 16 22 N -0.93 -58.62 11.23 21.65 0.24 -58.38 16 23 Si 0.95 48.52 29.58 68.60 2.03 50.55 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 27 C 0.18 9.19 4.86 86.36 0.42 9.61 16 28 C -0.11 -2.88 9.70 22.27 0.22 -2.66 16 29 C -0.13 -3.03 9.70 22.27 0.22 -2.81 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 34 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.12 3.38 8.06 -2.91 -0.02 3.35 16 37 H 0.12 2.34 8.09 -2.39 -0.02 2.32 16 38 H 0.14 2.10 8.08 -2.39 -0.02 2.08 16 39 H 0.41 9.04 8.60 -92.70 -0.80 8.24 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.70 7.42 -2.39 -0.02 1.68 16 45 H 0.04 1.53 7.64 -2.39 -0.02 1.51 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.04 2.37 6.15 -2.39 -0.01 2.35 16 49 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 51 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -80.15 404.88 3.22 -76.93 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.10 Total: 25.62 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.16 Total: -9.45 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.02 Total: -115.87 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -80.15 3.22 -76.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.777 kcal (2) G-P(sol) polarization free energy of solvation -80.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds