Wall clock time and date at job start Tue Mar 31 2020 16:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47472 * 2 1 4 4 C 1.38237 * 120.00143 * 90.00054 * 3 2 1 5 5 C 1.38228 * 119.99988 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00114 * 359.97324 * 5 4 3 7 7 C 1.50698 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47361 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47282 * 120.00432 * 7 6 5 10 10 C 1.50702 * 109.47197 * 239.99997 * 7 6 5 11 11 O 1.21280 * 119.99985 * 274.86843 * 10 7 6 12 12 N 1.34778 * 119.99904 * 94.86457 * 10 7 6 13 13 C 1.47425 * 125.64924 * 4.86055 * 12 10 7 14 14 C 1.55130 * 104.72352 * 155.81619 * 13 12 10 15 15 C 1.55157 * 101.48519 * 37.29723 * 14 13 12 16 16 H 1.08998 * 110.87198 * 205.89860 * 15 14 13 17 17 N 1.46504 * 110.71915 * 82.69456 * 15 14 13 18 18 C 1.36933 * 119.99798 * 91.48100 * 17 15 14 19 19 H 1.08000 * 120.00096 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00003 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47433 * 90.00193 * 22 20 18 24 24 H 1.48500 * 109.47060 * 210.00261 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00008 * 22 20 18 26 26 C 1.47029 * 125.64911 * 185.16941 * 12 10 7 27 27 H 1.09001 * 109.88033 * 300.44142 * 26 12 10 28 28 C 1.52995 * 109.88028 * 61.60572 * 26 12 10 29 29 C 1.38229 * 119.99804 * 0.28468 * 6 5 4 30 30 C 1.38238 * 120.00382 * 359.50466 * 29 6 5 31 31 H 1.09009 * 109.46651 * 300.00226 * 1 2 3 32 32 H 1.08997 * 109.47429 * 59.99565 * 1 2 3 33 33 H 1.08991 * 109.47299 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47288 * 240.00084 * 2 1 3 35 35 H 1.08991 * 109.47683 * 120.00054 * 2 1 3 36 36 H 1.08001 * 119.99616 * 359.97438 * 4 3 2 37 37 H 1.08001 * 120.00353 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47412 * 175.02008 * 9 7 6 39 39 H 1.09007 * 109.46804 * 295.02239 * 9 7 6 40 40 H 1.09001 * 109.46984 * 55.01600 * 9 7 6 41 41 H 1.08996 * 110.36707 * 274.74805 * 13 12 10 42 42 H 1.08999 * 110.36743 * 37.06893 * 13 12 10 43 43 H 1.08994 * 111.19452 * 279.19282 * 14 13 12 44 44 H 1.08994 * 110.93802 * 155.28880 * 14 13 12 45 45 H 0.97000 * 119.99841 * 271.47223 * 17 15 14 46 46 H 0.97001 * 119.99756 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.47759 * 58.54526 * 28 26 12 48 48 H 1.09003 * 109.47337 * 178.54833 * 28 26 12 49 49 H 1.09007 * 109.47448 * 298.54978 * 28 26 12 50 50 H 1.08006 * 119.99825 * 179.72418 * 29 6 5 51 51 H 1.07996 * 120.00199 * 180.28151 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7242 3.3755 1.1971 6 6 2.9556 4.0268 -0.0001 7 6 3.4591 5.4472 0.0000 8 1 3.5805 5.7896 1.0276 9 6 4.8073 5.5104 -0.7208 10 6 2.4676 6.3317 -0.7110 11 8 2.5098 6.4420 -1.9180 12 7 1.5337 7.0000 -0.0055 13 6 1.4313 7.0375 1.4647 14 6 0.6691 8.3530 1.7734 15 6 -0.3527 8.3990 0.6067 16 1 -0.6531 9.4250 0.3938 17 7 -1.5225 7.5705 0.9092 18 6 -2.6127 8.1243 1.5256 19 1 -2.6100 9.1716 1.7891 20 6 -3.7210 7.3392 1.8127 21 7 -4.7686 7.8713 2.4056 22 14 -3.7253 5.5275 1.3575 23 1 -3.1794 4.7321 2.4865 24 1 -5.1161 5.0921 1.0722 25 1 -2.8839 5.3179 0.1520 26 6 0.4447 7.8073 -0.5747 27 1 0.8584 8.6118 -1.1827 28 6 -0.4675 6.9231 -1.4272 29 6 2.7201 3.3769 -1.1972 30 6 2.2629 2.0724 -1.1972 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0824 1.5635 2.1324 37 1 2.9046 3.8845 2.1324 38 1 5.1293 6.5489 -0.7987 39 1 5.5473 4.9417 -0.1577 40 1 4.7056 5.0856 -1.7194 41 1 0.8698 6.1768 1.8280 42 1 2.4242 7.0607 1.9138 43 1 1.3380 9.2129 1.7411 44 1 0.1608 8.2920 2.7357 45 1 -1.5248 6.6298 0.6727 46 1 -5.5429 7.3226 2.6066 47 1 -0.8712 6.1183 -0.8129 48 1 -1.2866 7.5226 -1.8247 49 1 0.1053 6.4983 -2.2517 50 1 2.8967 3.8873 -2.1325 51 1 2.0832 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074969660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:03 Heat of formation + Delta-G solvation = -4.703118 kcal Electronic energy + Delta-G solvation = -29566.750611 eV Core-core repulsion = 25851.807991 eV Total energy + Delta-G solvation = -3714.942620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.53341 -39.35721 -37.69795 -35.17053 -34.10135 -32.70193 -31.59870 -31.00537 -30.89873 -29.35937 -28.65676 -25.45818 -25.08410 -23.65489 -23.10695 -22.86579 -21.93417 -20.77909 -19.53651 -18.51050 -17.93649 -17.05195 -16.69531 -15.93258 -15.57416 -15.17011 -14.93317 -14.51436 -14.24633 -14.10246 -13.81403 -13.61458 -13.45055 -13.40333 -13.16697 -13.10212 -12.96886 -12.62201 -12.45067 -12.27351 -11.98130 -11.81742 -11.79544 -11.58448 -11.52438 -11.30328 -11.13516 -11.06186 -10.93863 -10.90533 -10.77768 -10.71505 -10.31043 -10.12074 -9.62419 -9.56748 -9.00594 -8.97561 -8.57083 -8.40329 -7.35497 -5.83999 -3.20022 1.19133 1.34937 2.76962 3.16337 3.32068 3.36246 3.41072 3.66331 4.51446 4.52759 4.54036 4.66260 4.73318 4.85497 4.93471 4.96411 5.09427 5.12485 5.16867 5.18456 5.24583 5.35069 5.39259 5.44666 5.47669 5.54469 5.60155 5.62338 5.69752 5.71340 5.73057 5.77629 5.78855 5.93673 5.98050 6.00321 6.05155 6.06640 6.19159 6.28277 6.34324 6.36361 6.48842 6.51574 6.53339 6.63095 6.70877 6.80447 6.92069 7.75956 7.92163 8.33484 8.35212 9.12853 9.85345 10.04552 11.34010 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.004765 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.071794 B = 5874.949539 C = 7852.156840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.068 4.068 8 H 0.095 0.905 9 C -0.129 4.129 10 C 0.537 3.463 11 O -0.543 6.543 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.158 4.158 15 C 0.178 3.822 16 H 0.079 0.921 17 N -0.738 5.738 18 C -0.247 4.247 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.930 5.930 22 Si 0.876 3.124 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.123 3.877 27 H 0.075 0.925 28 C -0.151 4.151 29 C -0.100 4.100 30 C -0.118 4.118 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.365 0.635 46 H 0.260 0.740 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.128 0.872 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.796 -10.909 -3.222 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.136 4.136 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.089 4.089 8 H 0.113 0.887 9 C -0.187 4.187 10 C 0.325 3.675 11 O -0.421 6.421 12 N -0.341 5.341 13 C -0.020 4.020 14 C -0.199 4.199 15 C 0.066 3.934 16 H 0.097 0.903 17 N -0.381 5.381 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.578 5.578 22 Si 0.707 3.293 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.020 3.980 27 H 0.093 0.907 28 C -0.209 4.209 29 C -0.118 4.118 30 C -0.136 4.136 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.200 0.800 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.146 0.854 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.658 -10.731 -3.803 21.858 hybrid contribution -0.254 -1.327 -0.050 1.352 sum 18.405 -12.058 -3.853 22.338 Atomic orbital electron populations 1.21766 0.94587 1.01684 1.02624 1.20537 0.96300 0.92626 1.02623 1.19928 0.98767 0.96339 0.93257 1.20969 1.00205 0.94868 0.97551 1.21024 0.99278 0.94867 0.97233 1.19376 1.00881 0.93995 0.93677 1.20273 0.95263 0.91960 1.01452 0.88728 1.21660 0.93684 1.02361 1.00968 1.20018 0.80831 0.79497 0.87189 1.90649 1.72859 1.64549 1.14028 1.48694 1.28495 1.49145 1.07735 1.22388 0.99899 0.99880 0.79868 1.23529 0.98716 0.95118 1.02553 1.21161 0.86619 0.95436 0.90146 0.90322 1.42889 1.14488 1.08536 1.72224 1.19069 0.91725 0.96342 1.30500 0.88968 1.24623 0.96171 0.97295 1.00466 1.69689 1.05949 1.35280 1.46848 0.86694 0.77038 0.87186 0.78412 1.21064 1.21611 1.20231 1.22024 0.86746 0.93193 0.96052 0.90680 1.21962 0.99191 1.00340 0.99424 1.21110 0.98087 0.94474 0.98098 1.20998 1.00207 0.94852 0.97515 0.92376 0.92448 0.92398 0.91159 0.91122 0.86064 0.85940 0.92077 0.91852 0.91326 0.91381 0.91491 0.91554 0.89069 0.79985 0.92978 0.92488 0.91174 0.92607 0.85433 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.15 0.37 -1.06 16 2 C -0.08 -0.75 6.06 -27.88 -0.17 -0.92 16 3 C -0.08 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.32 9.70 -39.59 -0.38 -1.70 16 5 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 6 C -0.08 -0.98 4.77 -104.63 -0.50 -1.48 16 7 C -0.07 -0.82 2.61 -92.92 -0.24 -1.06 16 8 H 0.09 0.97 6.10 -51.93 -0.32 0.65 16 9 C -0.13 -1.36 8.66 37.16 0.32 -1.03 16 10 C 0.54 8.24 6.25 -10.98 -0.07 8.17 16 11 O -0.54 -9.78 15.07 5.56 0.08 -9.70 16 12 N -0.61 -9.40 3.06 -162.88 -0.50 -9.89 16 13 C 0.10 1.43 6.54 -2.41 -0.02 1.41 16 14 C -0.16 -2.40 6.78 -24.46 -0.17 -2.57 16 15 C 0.18 3.21 3.48 -66.09 -0.23 2.98 16 16 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 17 N -0.74 -16.45 4.35 -51.65 -0.22 -16.67 16 18 C -0.25 -6.60 10.44 -15.06 -0.16 -6.75 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 22 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.60 6.41 56.52 0.36 -6.24 16 26 C 0.12 2.09 3.40 -66.95 -0.23 1.86 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 C -0.15 -2.76 8.51 37.16 0.32 -2.44 16 29 C -0.10 -1.29 8.74 -39.58 -0.35 -1.64 16 30 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.18 7.95 -52.49 -0.42 0.76 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.74 6.86 -51.93 -0.36 0.38 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.36 8.30 3.53 -40.82 -0.14 8.15 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.06 1.14 6.09 -51.93 -0.32 0.82 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.05 1.02 7.06 -51.93 -0.37 0.65 16 50 H 0.13 1.72 7.06 -52.48 -0.37 1.35 16 51 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -31.47 400.59 -10.03 -41.50 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.59 Total: 10.19 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.90 Total: -10.88 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.05 Total: -54.25 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.47 -10.03 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.794 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds