Wall clock time and date at job start Tue Mar 31 2020 16:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47472 * 2 1 4 4 C 1.38237 * 120.00143 * 90.00054 * 3 2 1 5 5 C 1.38228 * 119.99988 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00114 * 359.97324 * 5 4 3 7 7 C 1.50698 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47361 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47282 * 120.00432 * 7 6 5 10 10 C 1.50702 * 109.47197 * 239.99997 * 7 6 5 11 11 O 1.21280 * 119.99985 * 274.86843 * 10 7 6 12 12 N 1.34778 * 119.99904 * 94.86457 * 10 7 6 13 13 C 1.47425 * 125.64924 * 4.86055 * 12 10 7 14 14 C 1.55130 * 104.72352 * 155.81619 * 13 12 10 15 15 C 1.55157 * 101.48519 * 37.29723 * 14 13 12 16 16 H 1.08998 * 110.87198 * 205.89860 * 15 14 13 17 17 N 1.46504 * 110.71915 * 82.69456 * 15 14 13 18 18 C 1.36933 * 119.99798 * 91.48100 * 17 15 14 19 19 H 1.08000 * 120.00096 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00003 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47433 * 90.00193 * 22 20 18 24 24 H 1.48500 * 109.47060 * 210.00261 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00008 * 22 20 18 26 26 C 1.47029 * 125.64911 * 185.16941 * 12 10 7 27 27 H 1.09001 * 109.88033 * 300.44142 * 26 12 10 28 28 C 1.52995 * 109.88028 * 61.60572 * 26 12 10 29 29 C 1.38229 * 119.99804 * 0.28468 * 6 5 4 30 30 C 1.38238 * 120.00382 * 359.50466 * 29 6 5 31 31 H 1.09009 * 109.46651 * 300.00226 * 1 2 3 32 32 H 1.08997 * 109.47429 * 59.99565 * 1 2 3 33 33 H 1.08991 * 109.47299 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47288 * 240.00084 * 2 1 3 35 35 H 1.08991 * 109.47683 * 120.00054 * 2 1 3 36 36 H 1.08001 * 119.99616 * 359.97438 * 4 3 2 37 37 H 1.08001 * 120.00353 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47412 * 175.02008 * 9 7 6 39 39 H 1.09007 * 109.46804 * 295.02239 * 9 7 6 40 40 H 1.09001 * 109.46984 * 55.01600 * 9 7 6 41 41 H 1.08996 * 110.36707 * 274.74805 * 13 12 10 42 42 H 1.08999 * 110.36743 * 37.06893 * 13 12 10 43 43 H 1.08994 * 111.19452 * 279.19282 * 14 13 12 44 44 H 1.08994 * 110.93802 * 155.28880 * 14 13 12 45 45 H 0.97000 * 119.99841 * 271.47223 * 17 15 14 46 46 H 0.97001 * 119.99756 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.47759 * 58.54526 * 28 26 12 48 48 H 1.09003 * 109.47337 * 178.54833 * 28 26 12 49 49 H 1.09007 * 109.47448 * 298.54978 * 28 26 12 50 50 H 1.08006 * 119.99825 * 179.72418 * 29 6 5 51 51 H 1.07996 * 120.00199 * 180.28151 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7242 3.3755 1.1971 6 6 2.9556 4.0268 -0.0001 7 6 3.4591 5.4472 0.0000 8 1 3.5805 5.7896 1.0276 9 6 4.8073 5.5104 -0.7208 10 6 2.4676 6.3317 -0.7110 11 8 2.5098 6.4420 -1.9180 12 7 1.5337 7.0000 -0.0055 13 6 1.4313 7.0375 1.4647 14 6 0.6691 8.3530 1.7734 15 6 -0.3527 8.3990 0.6067 16 1 -0.6531 9.4250 0.3938 17 7 -1.5225 7.5705 0.9092 18 6 -2.6127 8.1243 1.5256 19 1 -2.6100 9.1716 1.7891 20 6 -3.7210 7.3392 1.8127 21 7 -4.7686 7.8713 2.4056 22 14 -3.7253 5.5275 1.3575 23 1 -3.1794 4.7321 2.4865 24 1 -5.1161 5.0921 1.0722 25 1 -2.8839 5.3179 0.1520 26 6 0.4447 7.8073 -0.5747 27 1 0.8584 8.6118 -1.1827 28 6 -0.4675 6.9231 -1.4272 29 6 2.7201 3.3769 -1.1972 30 6 2.2629 2.0724 -1.1972 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0824 1.5635 2.1324 37 1 2.9046 3.8845 2.1324 38 1 5.1293 6.5489 -0.7987 39 1 5.5473 4.9417 -0.1577 40 1 4.7056 5.0856 -1.7194 41 1 0.8698 6.1768 1.8280 42 1 2.4242 7.0607 1.9138 43 1 1.3380 9.2129 1.7411 44 1 0.1608 8.2920 2.7357 45 1 -1.5248 6.6298 0.6727 46 1 -5.5429 7.3226 2.6066 47 1 -0.8712 6.1183 -0.8129 48 1 -1.2866 7.5226 -1.8247 49 1 0.1053 6.4983 -2.2517 50 1 2.8967 3.8873 -2.1325 51 1 2.0832 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074969660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:02 Heat of formation + Delta-G solvation = -20.841934 kcal Electronic energy + Delta-G solvation = -29567.450442 eV Core-core repulsion = 25851.807991 eV Total energy + Delta-G solvation = -3715.642451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.66855 -40.36902 -38.99021 -36.07727 -35.84033 -33.76556 -33.26341 -32.24651 -31.87088 -30.97436 -29.48030 -26.90694 -26.08401 -25.11267 -24.46484 -23.74735 -23.00986 -21.72767 -20.92688 -19.90532 -19.65576 -18.27022 -17.77223 -17.11249 -16.46412 -16.41430 -16.16120 -16.08150 -15.65545 -15.20652 -14.98931 -14.76397 -14.60938 -14.41159 -14.32205 -14.22957 -14.11141 -13.99130 -13.67543 -13.36910 -13.24580 -13.17109 -12.98153 -12.75078 -12.65343 -12.51022 -12.45222 -12.38503 -12.29999 -12.06029 -11.99324 -11.75046 -11.74286 -11.67302 -11.53624 -10.99380 -10.77742 -9.85436 -9.66258 -9.46134 -9.32074 -8.02620 -5.34378 0.30924 0.46944 1.33459 1.34920 1.41070 1.60289 1.98613 2.44982 2.77579 3.27019 3.46026 3.54328 3.65676 3.72829 3.83000 3.91658 3.95226 4.06028 4.09741 4.16740 4.20845 4.31006 4.32949 4.39593 4.46740 4.51207 4.53723 4.64536 4.65603 4.68438 4.72934 4.83070 4.86769 4.93254 5.00541 5.00821 5.02413 5.11111 5.16884 5.18509 5.21541 5.24555 5.32749 5.35227 5.39318 5.48104 5.63483 5.69752 5.79896 6.07008 6.21715 6.57070 7.06928 7.14347 7.83029 8.01015 9.18857 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.004765 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.071794 B = 5874.949539 C = 7852.156840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.126 4.126 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.061 4.061 8 H 0.120 0.880 9 C -0.126 4.126 10 C 0.533 3.467 11 O -0.575 6.575 12 N -0.609 5.609 13 C 0.104 3.896 14 C -0.146 4.146 15 C 0.167 3.833 16 H 0.075 0.925 17 N -0.740 5.740 18 C -0.220 4.220 19 H 0.068 0.932 20 C -0.053 4.053 21 N -0.980 5.980 22 Si 0.936 3.064 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.264 1.264 26 C 0.129 3.871 27 H 0.083 0.917 28 C -0.143 4.143 29 C -0.117 4.117 30 C -0.130 4.130 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.364 0.636 46 H 0.256 0.744 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.112 0.888 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.284 -12.300 -2.343 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.127 4.127 6 C -0.091 4.091 7 C -0.082 4.082 8 H 0.138 0.862 9 C -0.183 4.183 10 C 0.322 3.678 11 O -0.455 6.455 12 N -0.341 5.341 13 C -0.018 4.018 14 C -0.187 4.187 15 C 0.058 3.942 16 H 0.093 0.907 17 N -0.384 5.384 18 C -0.351 4.351 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.630 5.630 22 Si 0.765 3.235 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.190 1.190 26 C 0.025 3.975 27 H 0.101 0.899 28 C -0.201 4.201 29 C -0.135 4.135 30 C -0.148 4.148 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.130 0.870 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.218 -12.120 -2.934 24.611 hybrid contribution -0.973 -0.824 -0.385 1.332 sum 20.245 -12.944 -3.318 24.257 Atomic orbital electron populations 1.21765 0.95060 1.02413 1.01421 1.20572 0.95732 0.91548 1.03947 1.20227 0.98194 0.97389 0.93036 1.21303 0.99698 0.95037 0.98331 1.21312 0.98643 0.95120 0.97665 1.19470 1.01511 0.94241 0.93853 1.20310 0.94557 0.90902 1.02386 0.86223 1.21652 0.93506 1.02798 1.00362 1.20689 0.80910 0.79180 0.86971 1.90636 1.73744 1.65462 1.15645 1.48751 1.27983 1.49003 1.08408 1.22475 1.01853 0.98530 0.78896 1.23384 0.98044 0.97182 1.00087 1.21379 0.86113 0.94595 0.92121 0.90688 1.42852 1.14757 1.08823 1.71972 1.19048 0.92529 0.95183 1.28328 0.91422 1.25251 0.96201 1.01257 1.01752 1.69840 1.06882 1.36773 1.49550 0.85716 0.76566 0.82572 0.78638 1.20343 1.22514 1.18986 1.21831 0.86996 0.93370 0.95311 0.89872 1.21854 0.99209 0.99847 0.99180 1.21131 0.99265 0.95150 0.97987 1.21190 1.00364 0.94729 0.98490 0.93414 0.93762 0.90755 0.90108 0.89559 0.84174 0.83714 0.91793 0.89617 0.92928 0.92360 0.87412 0.88757 0.90376 0.80047 0.93444 0.94235 0.91779 0.93013 0.86964 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.89 71.98 0.71 -1.87 16 2 C -0.08 -1.27 6.06 29.85 0.18 -1.09 16 3 C -0.09 -1.81 5.13 -19.86 -0.10 -1.92 16 4 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 5 C -0.11 -2.20 9.67 22.27 0.22 -1.98 16 6 C -0.09 -2.07 4.77 -19.87 -0.09 -2.17 16 7 C -0.06 -1.29 2.61 -12.29 -0.03 -1.32 16 8 H 0.12 1.91 6.10 -2.39 -0.01 1.90 16 9 C -0.13 -2.36 8.66 71.98 0.62 -1.74 16 10 C 0.53 15.38 6.25 87.66 0.55 15.93 16 11 O -0.58 -20.34 15.07 -3.03 -0.05 -20.39 16 12 N -0.61 -17.42 3.06 -787.61 -2.41 -19.83 16 13 C 0.10 2.55 6.54 86.93 0.57 3.12 16 14 C -0.15 -4.05 6.78 32.06 0.22 -3.83 16 15 C 0.17 5.83 3.48 46.18 0.16 5.99 16 16 H 0.08 2.67 8.09 -2.39 -0.02 2.65 16 17 N -0.74 -32.50 4.35 -317.32 -1.38 -33.88 16 18 C -0.22 -11.84 10.44 84.04 0.88 -10.96 16 19 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 20 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 21 N -0.98 -61.30 13.97 21.65 0.30 -60.99 16 22 Si 0.94 45.42 27.74 68.60 1.90 47.32 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.26 -12.12 6.41 99.48 0.64 -11.49 16 26 C 0.13 4.18 3.40 45.34 0.15 4.34 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 C -0.14 -5.15 8.51 71.98 0.61 -4.54 16 29 C -0.12 -2.97 8.74 22.27 0.19 -2.78 16 30 C -0.13 -2.96 9.70 22.27 0.22 -2.75 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 35 H 0.09 1.09 8.08 -2.39 -0.02 1.08 16 36 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.15 2.17 7.95 -2.91 -0.02 2.15 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.05 1.16 7.11 -2.39 -0.02 1.14 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.81 6.86 -2.39 -0.02 1.79 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.36 16.20 3.53 -92.71 -0.33 15.87 16 46 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.04 1.55 6.09 -2.38 -0.01 1.53 16 48 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.05 1.89 7.06 -2.38 -0.02 1.87 16 50 H 0.11 3.11 7.06 -2.91 -0.02 3.09 16 51 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -69.23 400.59 4.61 -64.62 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.51 Total: 35.54 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.74 Total: -12.39 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.49 Total: -114.70 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Total: -69.23 4.61 -64.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.782 kcal (2) G-P(sol) polarization free energy of solvation -69.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds