Wall clock time and date at job start Tue Mar 31 2020 16:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47424 * 2 1 4 4 C 1.38231 * 119.99597 * 89.99803 * 3 2 1 5 5 C 1.38243 * 119.99666 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99924 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46920 * 0.02562 * 7 6 5 9 9 C 1.52991 * 109.47235 * 240.00165 * 7 6 5 10 10 C 1.50701 * 109.47295 * 119.99838 * 7 6 5 11 11 O 1.21282 * 119.99889 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00151 * 180.02562 * 10 7 6 13 13 C 1.47421 * 125.64867 * 359.97324 * 12 10 7 14 14 C 1.54913 * 104.83061 * 155.91445 * 13 12 10 15 15 C 1.55153 * 101.58099 * 37.01308 * 14 13 12 16 16 H 1.09001 * 110.71694 * 205.95306 * 15 14 13 17 17 N 1.46504 * 110.71944 * 82.85847 * 15 14 13 18 18 C 1.36934 * 119.99567 * 88.84454 * 17 15 14 19 19 H 1.08001 * 120.00537 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 270.00112 * 22 20 18 24 24 H 1.48496 * 109.47029 * 30.00128 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99958 * 22 20 18 26 26 C 1.47493 * 125.59150 * 180.02562 * 12 10 7 27 27 H 1.08999 * 109.95989 * 300.32838 * 26 12 10 28 28 C 1.52998 * 110.02954 * 61.64001 * 26 12 10 29 29 C 1.38232 * 120.00103 * 0.25501 * 6 5 4 30 30 C 1.38226 * 120.00125 * 269.98054 * 3 2 1 31 31 H 1.09008 * 109.46983 * 300.00091 * 1 2 3 32 32 H 1.08994 * 109.47295 * 59.99775 * 1 2 3 33 33 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47238 * 240.00012 * 2 1 3 35 35 H 1.09008 * 109.47393 * 120.00090 * 2 1 3 36 36 H 1.07995 * 120.00706 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00184 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47803 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47119 * 299.99820 * 9 7 6 40 40 H 1.08994 * 109.47282 * 59.99715 * 9 7 6 41 41 H 1.09006 * 110.36319 * 37.07971 * 13 12 10 42 42 H 1.09002 * 110.36559 * 274.75588 * 13 12 10 43 43 H 1.08993 * 111.00346 * 278.93647 * 14 13 12 44 44 H 1.09005 * 111.03024 * 155.10126 * 14 13 12 45 45 H 0.97000 * 119.99825 * 268.83635 * 17 15 14 46 46 H 0.97005 * 119.99717 * 0.02562 * 21 20 18 47 47 H 1.09008 * 109.46768 * 177.60614 * 28 26 12 48 48 H 1.08996 * 109.47580 * 297.60707 * 28 26 12 49 49 H 1.09007 * 109.47362 * 57.61486 * 28 26 12 50 50 H 1.08004 * 120.00091 * 179.72766 * 29 6 5 51 51 H 1.08004 * 119.99761 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9536 4.0275 0.0000 7 6 3.4549 5.4487 0.0000 8 1 3.5757 5.7913 1.0277 9 6 2.4468 6.3450 -0.7218 10 6 4.7827 5.5130 -0.7098 11 8 5.2734 4.5042 -1.1707 12 7 5.4249 6.6916 -0.8324 13 6 4.9449 7.9888 -0.3224 14 6 6.2244 8.8444 -0.1479 15 6 7.0690 8.3943 -1.3692 16 1 8.1326 8.5297 -1.1734 17 7 6.6684 9.1252 -2.5740 18 6 7.2651 10.3190 -2.8806 19 1 8.0307 10.7219 -2.2341 20 6 6.8860 11.0113 -4.0225 21 7 5.9534 10.5201 -4.8108 22 14 7.6994 12.6402 -4.4405 23 1 6.9357 13.7496 -3.8151 24 1 9.0917 12.6450 -3.9243 25 1 7.7174 12.8207 -5.9143 26 6 6.7240 6.8958 -1.5002 27 1 7.4916 6.2948 -1.0127 28 6 6.6196 6.5129 -2.9778 29 6 2.7187 3.3774 -1.1971 30 6 2.2632 2.0723 -1.1971 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9027 3.8852 2.1325 38 1 2.8095 7.3729 -0.7222 39 1 2.3264 6.0023 -1.7494 40 1 1.4865 6.2985 -0.2084 41 1 4.4429 7.8572 0.6362 42 1 4.2725 8.4543 -1.0430 43 1 6.7305 8.6041 0.7870 44 1 5.9940 9.9084 -0.2029 45 1 5.9807 8.7634 -3.1546 46 1 5.5307 9.6744 -4.5935 47 1 7.5717 6.7073 -3.4717 48 1 6.3760 5.4538 -3.0624 49 1 5.8368 7.1048 -3.4522 50 1 2.8945 3.8880 -2.1324 51 1 2.0838 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074969661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:09 Heat of formation + Delta-G solvation = -4.442247 kcal Electronic energy + Delta-G solvation = -28808.467006 eV Core-core repulsion = 25093.535698 eV Total energy + Delta-G solvation = -3714.931307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.51255 -39.33587 -37.55533 -35.17141 -34.31703 -32.92733 -31.36207 -30.96111 -30.86126 -28.88324 -28.28287 -25.39945 -24.89758 -23.67737 -23.39733 -22.82092 -21.94205 -20.76795 -19.75412 -18.50808 -17.61132 -16.88878 -16.44734 -15.85869 -15.62265 -15.34983 -14.91940 -14.71162 -14.20460 -13.94662 -13.87714 -13.73924 -13.55278 -13.38965 -13.28903 -12.95724 -12.94522 -12.50859 -12.42917 -12.30678 -12.01092 -11.90627 -11.65437 -11.54637 -11.32092 -11.29751 -11.22546 -11.00004 -10.87228 -10.80220 -10.70583 -10.27630 -10.22884 -10.01198 -9.46454 -9.23723 -8.98037 -8.89779 -8.56370 -8.36335 -7.11879 -6.16355 -3.17491 1.26690 1.41139 2.83075 3.18071 3.48252 3.52485 3.66744 3.74944 4.46456 4.56805 4.61544 4.63807 4.72592 4.90366 4.94887 5.00262 5.08704 5.13598 5.14970 5.23513 5.30895 5.34873 5.42301 5.46282 5.48049 5.58672 5.60490 5.63454 5.67178 5.69979 5.74280 5.76200 5.84745 5.89411 5.99292 6.02607 6.04171 6.09221 6.24323 6.30931 6.37646 6.40215 6.52516 6.55792 6.60178 6.65033 6.75825 6.86382 6.97312 7.75666 7.80444 8.39302 8.68898 9.14362 10.00801 10.15512 11.31208 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027018 B = 0.002420 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.079673 B =11565.642851 C =11765.620583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.111 4.111 6 C -0.066 4.066 7 C -0.067 4.067 8 H 0.099 0.901 9 C -0.149 4.149 10 C 0.531 3.469 11 O -0.537 6.537 12 N -0.608 5.608 13 C 0.105 3.895 14 C -0.160 4.160 15 C 0.177 3.823 16 H 0.069 0.931 17 N -0.725 5.725 18 C -0.334 4.334 19 H 0.066 0.934 20 C -0.043 4.043 21 N -0.941 5.941 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 C 0.127 3.873 27 H 0.071 0.929 28 C -0.147 4.147 29 C -0.079 4.079 30 C -0.119 4.119 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.371 0.629 46 H 0.255 0.745 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -15.369 13.349 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.129 4.129 6 C -0.066 4.066 7 C -0.088 4.088 8 H 0.117 0.883 9 C -0.206 4.206 10 C 0.319 3.681 11 O -0.414 6.414 12 N -0.342 5.342 13 C -0.018 4.018 14 C -0.201 4.201 15 C 0.065 3.935 16 H 0.087 0.913 17 N -0.369 5.369 18 C -0.464 4.464 19 H 0.084 0.916 20 C -0.240 4.240 21 N -0.586 5.586 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.214 1.214 26 C 0.023 3.977 27 H 0.089 0.911 28 C -0.205 4.205 29 C -0.097 4.097 30 C -0.137 4.137 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.207 0.793 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.141 -14.617 12.093 21.059 hybrid contribution -0.198 -1.181 1.081 1.613 sum -9.339 -15.798 13.175 22.591 Atomic orbital electron populations 1.21744 0.94828 1.01523 1.02227 1.20528 0.96070 0.92873 1.02704 1.19846 0.99405 0.96071 0.93264 1.20883 1.01021 0.94770 0.97340 1.20954 0.99909 0.94895 0.97106 1.19305 0.99405 0.94338 0.93575 1.20231 0.93298 0.94051 1.01231 0.88265 1.21943 0.98191 0.99677 1.00798 1.20055 0.85904 0.82053 0.80122 1.90689 1.67673 1.33865 1.49161 1.48754 1.21987 1.07217 1.56275 1.22378 0.97891 0.83401 0.98119 1.23511 0.96280 1.00642 0.99676 1.21123 0.97068 0.87728 0.87588 0.91347 1.42562 1.46419 1.23429 1.24462 1.20061 1.19023 0.98227 1.09139 0.91591 1.25765 0.99705 1.04806 0.93770 1.70867 1.27185 1.21250 1.39324 0.83198 0.74648 0.74660 0.76174 1.22332 1.22134 1.21427 1.22060 0.84273 0.97775 0.93559 0.91094 1.21897 1.02836 1.00883 0.94933 1.20905 0.96585 0.94503 0.97682 1.20962 1.00497 0.94832 0.97424 0.92614 0.92530 0.92546 0.91137 0.91217 0.86381 0.86313 0.90760 0.91875 0.91428 0.91600 0.91028 0.91972 0.89399 0.79275 0.93413 0.91492 0.92496 0.92246 0.86309 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.85 16 3 C -0.09 -0.92 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.11 -1.25 9.67 -39.58 -0.38 -1.64 16 6 C -0.07 -0.85 4.39 -104.63 -0.46 -1.30 16 7 C -0.07 -0.83 2.25 -92.93 -0.21 -1.04 16 8 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 9 C -0.15 -1.68 8.81 37.15 0.33 -1.35 16 10 C 0.53 8.46 6.89 -10.98 -0.08 8.39 16 11 O -0.54 -10.24 14.20 5.56 0.08 -10.16 16 12 N -0.61 -9.65 3.08 -162.66 -0.50 -10.15 16 13 C 0.10 1.51 5.11 -2.53 -0.01 1.49 16 14 C -0.16 -2.54 6.77 -24.58 -0.17 -2.71 16 15 C 0.18 3.33 3.46 -66.10 -0.23 3.10 16 16 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 17 N -0.72 -16.88 4.60 -51.65 -0.24 -17.12 16 18 C -0.33 -8.84 9.97 -15.06 -0.15 -8.99 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 21 N -0.94 -28.22 13.70 55.49 0.76 -27.46 16 22 Si 1.08 25.20 29.92 -169.99 -5.09 20.11 16 23 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.13 2.22 3.45 -66.70 -0.23 1.99 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 C -0.15 -2.77 8.48 37.16 0.32 -2.46 16 29 C -0.08 -1.05 7.94 -39.59 -0.31 -1.37 16 30 C -0.12 -1.41 9.70 -39.59 -0.38 -1.80 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.10 7.95 -52.48 -0.42 0.68 16 38 H 0.07 0.84 5.00 -51.93 -0.26 0.58 16 39 H 0.06 0.77 7.37 -51.93 -0.38 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.76 7.36 -51.93 -0.38 0.38 16 42 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.37 9.08 4.41 -40.82 -0.18 8.90 16 46 H 0.25 7.54 6.77 -40.82 -0.28 7.27 16 47 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 48 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 49 H 0.06 1.21 6.21 -51.92 -0.32 0.88 16 50 H 0.12 1.66 7.52 -52.48 -0.39 1.27 16 51 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -31.45 397.53 -10.22 -41.67 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.43 Total: 10.71 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.79 Total: -13.60 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.02 Total: -54.72 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.45 -10.22 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.225 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds