Wall clock time and date at job start Tue Mar 31 2020 16:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47424 * 2 1 4 4 C 1.38231 * 119.99597 * 89.99803 * 3 2 1 5 5 C 1.38243 * 119.99666 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99924 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46920 * 0.02562 * 7 6 5 9 9 C 1.52991 * 109.47235 * 240.00165 * 7 6 5 10 10 C 1.50701 * 109.47295 * 119.99838 * 7 6 5 11 11 O 1.21282 * 119.99889 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00151 * 180.02562 * 10 7 6 13 13 C 1.47421 * 125.64867 * 359.97324 * 12 10 7 14 14 C 1.54913 * 104.83061 * 155.91445 * 13 12 10 15 15 C 1.55153 * 101.58099 * 37.01308 * 14 13 12 16 16 H 1.09001 * 110.71694 * 205.95306 * 15 14 13 17 17 N 1.46504 * 110.71944 * 82.85847 * 15 14 13 18 18 C 1.36934 * 119.99567 * 88.84454 * 17 15 14 19 19 H 1.08001 * 120.00537 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 270.00112 * 22 20 18 24 24 H 1.48496 * 109.47029 * 30.00128 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99958 * 22 20 18 26 26 C 1.47493 * 125.59150 * 180.02562 * 12 10 7 27 27 H 1.08999 * 109.95989 * 300.32838 * 26 12 10 28 28 C 1.52998 * 110.02954 * 61.64001 * 26 12 10 29 29 C 1.38232 * 120.00103 * 0.25501 * 6 5 4 30 30 C 1.38226 * 120.00125 * 269.98054 * 3 2 1 31 31 H 1.09008 * 109.46983 * 300.00091 * 1 2 3 32 32 H 1.08994 * 109.47295 * 59.99775 * 1 2 3 33 33 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47238 * 240.00012 * 2 1 3 35 35 H 1.09008 * 109.47393 * 120.00090 * 2 1 3 36 36 H 1.07995 * 120.00706 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00184 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47803 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47119 * 299.99820 * 9 7 6 40 40 H 1.08994 * 109.47282 * 59.99715 * 9 7 6 41 41 H 1.09006 * 110.36319 * 37.07971 * 13 12 10 42 42 H 1.09002 * 110.36559 * 274.75588 * 13 12 10 43 43 H 1.08993 * 111.00346 * 278.93647 * 14 13 12 44 44 H 1.09005 * 111.03024 * 155.10126 * 14 13 12 45 45 H 0.97000 * 119.99825 * 268.83635 * 17 15 14 46 46 H 0.97005 * 119.99717 * 0.02562 * 21 20 18 47 47 H 1.09008 * 109.46768 * 177.60614 * 28 26 12 48 48 H 1.08996 * 109.47580 * 297.60707 * 28 26 12 49 49 H 1.09007 * 109.47362 * 57.61486 * 28 26 12 50 50 H 1.08004 * 120.00091 * 179.72766 * 29 6 5 51 51 H 1.08004 * 119.99761 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9536 4.0275 0.0000 7 6 3.4549 5.4487 0.0000 8 1 3.5757 5.7913 1.0277 9 6 2.4468 6.3450 -0.7218 10 6 4.7827 5.5130 -0.7098 11 8 5.2734 4.5042 -1.1707 12 7 5.4249 6.6916 -0.8324 13 6 4.9449 7.9888 -0.3224 14 6 6.2244 8.8444 -0.1479 15 6 7.0690 8.3943 -1.3692 16 1 8.1326 8.5297 -1.1734 17 7 6.6684 9.1252 -2.5740 18 6 7.2651 10.3190 -2.8806 19 1 8.0307 10.7219 -2.2341 20 6 6.8860 11.0113 -4.0225 21 7 5.9534 10.5201 -4.8108 22 14 7.6994 12.6402 -4.4405 23 1 6.9357 13.7496 -3.8151 24 1 9.0917 12.6450 -3.9243 25 1 7.7174 12.8207 -5.9143 26 6 6.7240 6.8958 -1.5002 27 1 7.4916 6.2948 -1.0127 28 6 6.6196 6.5129 -2.9778 29 6 2.7187 3.3774 -1.1971 30 6 2.2632 2.0723 -1.1971 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9027 3.8852 2.1325 38 1 2.8095 7.3729 -0.7222 39 1 2.3264 6.0023 -1.7494 40 1 1.4865 6.2985 -0.2084 41 1 4.4429 7.8572 0.6362 42 1 4.2725 8.4543 -1.0430 43 1 6.7305 8.6041 0.7870 44 1 5.9940 9.9084 -0.2029 45 1 5.9807 8.7634 -3.1546 46 1 5.5307 9.6744 -4.5935 47 1 7.5717 6.7073 -3.4717 48 1 6.3760 5.4538 -3.0624 49 1 5.8368 7.1048 -3.4522 50 1 2.8945 3.8880 -2.1324 51 1 2.0838 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074969661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:08 Heat of formation + Delta-G solvation = -20.409426 kcal Electronic energy + Delta-G solvation = -28809.159395 eV Core-core repulsion = 25093.535698 eV Total energy + Delta-G solvation = -3715.623696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.70418 -40.36691 -38.89968 -36.16636 -36.00900 -34.00429 -32.86396 -32.26632 -31.82895 -30.35789 -29.31971 -26.80870 -25.94852 -25.52345 -24.51191 -23.70073 -23.01583 -21.79977 -21.04460 -19.80050 -19.49479 -18.16807 -17.60990 -17.00626 -16.75226 -16.60215 -16.23134 -15.80652 -15.62154 -15.33560 -15.00351 -14.73966 -14.66519 -14.52489 -14.33652 -14.13110 -13.97676 -13.97277 -13.51099 -13.35556 -13.23647 -13.07493 -12.98041 -12.79867 -12.55561 -12.49304 -12.38576 -12.22887 -12.04489 -11.93492 -11.77724 -11.76723 -11.65134 -11.61802 -11.24084 -10.91427 -10.72482 -9.78865 -9.69732 -9.42897 -9.10019 -8.34798 -5.29359 0.38816 0.53033 1.58514 1.60651 1.70573 1.84109 1.94872 2.72877 2.84491 3.37417 3.46553 3.56110 3.68941 3.72186 3.83533 3.92235 3.98211 4.09217 4.11142 4.13770 4.20253 4.22754 4.29763 4.38059 4.45291 4.51528 4.56506 4.61585 4.65276 4.68853 4.71957 4.78290 4.81867 4.85961 4.96267 5.04881 5.08145 5.11874 5.13037 5.17218 5.19272 5.22704 5.30522 5.35750 5.38545 5.52243 5.66210 5.70057 5.73233 6.12332 6.51376 6.55123 7.10489 7.13255 8.01292 8.13610 9.16204 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027018 B = 0.002420 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.079673 B =11565.642851 C =11765.620583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.125 4.125 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.057 4.057 8 H 0.129 0.871 9 C -0.144 4.144 10 C 0.527 3.473 11 O -0.573 6.573 12 N -0.607 5.607 13 C 0.109 3.891 14 C -0.147 4.147 15 C 0.168 3.832 16 H 0.067 0.933 17 N -0.736 5.736 18 C -0.321 4.321 19 H 0.071 0.929 20 C -0.105 4.105 21 N -0.978 5.978 22 Si 1.128 2.872 23 H -0.285 1.285 24 H -0.273 1.273 25 H -0.300 1.300 26 C 0.132 3.868 27 H 0.079 0.921 28 C -0.134 4.134 29 C -0.101 4.101 30 C -0.134 4.134 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.362 0.638 46 H 0.242 0.758 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.038 0.962 50 H 0.097 0.903 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -15.807 16.648 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.143 4.143 5 C -0.131 4.131 6 C -0.084 4.084 7 C -0.078 4.078 8 H 0.146 0.854 9 C -0.201 4.201 10 C 0.316 3.684 11 O -0.452 6.452 12 N -0.341 5.341 13 C -0.013 4.013 14 C -0.188 4.188 15 C 0.058 3.942 16 H 0.085 0.915 17 N -0.379 5.379 18 C -0.453 4.453 19 H 0.089 0.911 20 C -0.296 4.296 21 N -0.626 5.626 22 Si 0.954 3.046 23 H -0.212 1.212 24 H -0.198 1.198 25 H -0.227 1.227 26 C 0.028 3.972 27 H 0.097 0.903 28 C -0.193 4.193 29 C -0.119 4.119 30 C -0.152 4.152 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.197 0.803 46 H 0.052 0.948 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.116 0.884 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.590 -15.068 15.459 23.621 hybrid contribution -0.030 -1.177 0.096 1.181 sum -9.620 -16.244 15.555 24.462 Atomic orbital electron populations 1.21721 0.93955 1.02430 1.01916 1.20585 0.96736 0.91315 1.03460 1.20179 0.98507 0.97238 0.92877 1.21256 1.00049 0.94678 0.98285 1.21270 0.99179 0.95281 0.97367 1.19425 1.00318 0.94684 0.93950 1.20244 0.90990 0.94428 1.02131 0.85360 1.21920 0.99066 0.99194 0.99968 1.20776 0.86754 0.81250 0.79577 1.90671 1.68775 1.35130 1.50672 1.48783 1.21331 1.07955 1.56016 1.22444 0.97140 0.82118 0.99628 1.23361 0.96323 1.00013 0.99104 1.21332 0.97517 0.88128 0.87255 0.91491 1.42680 1.46180 1.23049 1.25993 1.20381 1.17929 0.98653 1.08308 0.91096 1.27069 1.00255 1.07882 0.94421 1.70979 1.29361 1.21426 1.40839 0.82597 0.75052 0.71678 0.75283 1.21165 1.19844 1.22670 1.21873 0.85761 0.96922 0.92657 0.90303 1.21737 1.01374 1.00021 0.96140 1.20904 0.98165 0.95414 0.97425 1.21139 1.00916 0.94575 0.98573 0.92431 0.93341 0.91049 0.91019 0.89854 0.83754 0.83831 0.90729 0.93778 0.89205 0.87451 0.92520 0.88928 0.90739 0.80275 0.94795 0.92533 0.93006 0.94343 0.88444 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16 4 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 5 C -0.11 -2.27 9.67 22.27 0.22 -2.05 16 6 C -0.08 -2.05 4.39 -19.87 -0.09 -2.13 16 7 C -0.06 -1.32 2.25 -12.29 -0.03 -1.35 16 8 H 0.13 2.21 7.58 -2.39 -0.02 2.19 16 9 C -0.14 -3.09 8.81 71.98 0.63 -2.45 16 10 C 0.53 16.43 6.89 87.66 0.60 17.04 16 11 O -0.57 -22.12 14.20 -3.03 -0.04 -22.16 16 12 N -0.61 -18.65 3.08 -786.93 -2.42 -21.07 16 13 C 0.11 2.90 5.11 86.86 0.44 3.34 16 14 C -0.15 -4.36 6.77 31.99 0.22 -4.14 16 15 C 0.17 6.21 3.46 46.18 0.16 6.37 16 16 H 0.07 2.51 8.11 -2.39 -0.02 2.49 16 17 N -0.74 -34.76 4.60 -317.33 -1.46 -36.22 16 18 C -0.32 -17.07 9.97 84.03 0.84 -16.23 16 19 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 20 C -0.11 -5.93 5.50 84.86 0.47 -5.46 16 21 N -0.98 -60.30 13.70 21.65 0.30 -60.01 16 22 Si 1.13 50.93 29.92 68.60 2.05 52.98 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 C 0.13 4.60 3.45 45.25 0.16 4.76 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 28 C -0.13 -5.27 8.48 71.98 0.61 -4.66 16 29 C -0.10 -2.76 7.94 22.27 0.18 -2.59 16 30 C -0.13 -3.20 9.70 22.27 0.22 -2.98 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.14 2.09 7.95 -2.91 -0.02 2.06 16 38 H 0.07 1.58 5.00 -2.39 -0.01 1.57 16 39 H 0.04 1.10 7.37 -2.39 -0.02 1.08 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 2.03 7.36 -2.38 -0.02 2.01 16 42 H 0.06 1.72 7.07 -2.39 -0.02 1.70 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 45 H 0.36 18.42 4.41 -92.71 -0.41 18.01 16 46 H 0.24 14.96 6.77 -92.70 -0.63 14.33 16 47 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.05 2.05 6.93 -2.39 -0.02 2.03 16 49 H 0.04 1.65 6.21 -2.38 -0.01 1.63 16 50 H 0.10 2.97 7.52 -2.91 -0.02 2.95 16 51 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -69.99 397.53 4.70 -65.29 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.64 Total: 39.71 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.63 Total: -18.52 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -3.59 Total: -117.30 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.04 Total: -22.16 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -69.99 4.70 -65.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074969661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds