Wall clock time and date at job start Tue Mar 31 2020 16:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50709 * 109.46767 * 2 1 4 4 C 1.38231 * 119.99962 * 89.99689 * 3 2 1 5 5 C 1.38240 * 119.99616 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00107 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00011 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46854 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.46967 * 119.99757 * 7 6 5 10 10 C 1.50698 * 109.47279 * 239.99730 * 7 6 5 11 11 O 1.21282 * 119.99910 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00280 * 179.97438 * 10 7 6 13 13 C 1.47018 * 125.64993 * 180.02562 * 12 10 7 14 14 C 1.54325 * 107.40412 * 178.90064 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64489 * 0.04405 * 12 10 7 29 29 C 1.38241 * 119.99912 * 0.25272 * 6 5 4 30 30 C 1.38230 * 119.99668 * 359.49217 * 29 6 5 31 31 H 1.09001 * 109.47178 * 300.00187 * 1 2 3 32 32 H 1.09002 * 109.47144 * 60.00460 * 1 2 3 33 33 H 1.09004 * 109.46302 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47390 * 239.99656 * 2 1 3 35 35 H 1.09002 * 109.47144 * 119.99540 * 2 1 3 36 36 H 1.07993 * 120.00363 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99770 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47643 * 300.00242 * 9 7 6 39 39 H 1.09003 * 109.47134 * 60.00416 * 9 7 6 40 40 H 1.09009 * 109.47175 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.88241 * 298.39592 * 13 12 10 42 42 H 1.09000 * 109.88049 * 59.40721 * 13 12 10 43 43 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 44 44 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 45 45 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 46 46 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 47 47 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36956 * 322.93474 * 28 12 10 49 49 H 1.09001 * 110.36709 * 85.14667 * 28 12 10 50 50 H 1.07995 * 119.99747 * 179.73161 * 29 6 5 51 51 H 1.08002 * 119.99677 * 180.23213 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7228 3.3761 1.1970 6 6 2.9522 4.0281 -0.0001 7 6 3.4533 5.4493 -0.0002 8 1 3.5750 5.7917 1.0275 9 6 4.8008 5.5148 -0.7219 10 6 2.4597 6.3323 -0.7102 11 8 1.4444 5.8546 -1.1704 12 7 2.6989 7.6530 -0.8329 13 6 1.8188 8.6251 -1.4975 14 6 2.4829 10.0122 -1.3693 15 1 3.0544 10.2506 -2.2663 16 6 1.4342 11.0908 -1.0909 17 6 3.4274 9.8309 -0.1486 18 1 2.8832 9.9613 0.7868 19 7 4.5660 10.7497 -0.2235 20 6 5.2947 11.0303 0.9014 21 1 5.0298 10.5745 1.8440 22 6 6.3732 11.9013 0.8304 23 7 6.6958 12.4571 -0.3182 24 14 7.3677 12.2834 2.3648 25 1 6.8051 11.5361 3.5182 26 1 8.7803 11.8776 2.1530 27 1 7.3078 13.7409 2.6432 28 6 3.8867 8.3620 -0.3231 29 6 2.7164 3.3782 -1.1973 30 6 2.2612 2.0730 -1.1972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0830 1.5634 2.1324 37 1 2.9024 3.8854 2.1324 38 1 5.5195 4.8762 -0.2085 39 1 4.6796 5.1723 -1.7496 40 1 5.1631 6.5430 -0.7224 41 1 1.7059 8.3640 -2.5498 42 1 0.8432 8.6348 -1.0114 43 1 0.8977 10.8479 -0.1737 44 1 1.9271 12.0565 -0.9785 45 1 0.7306 11.1366 -1.9222 46 1 4.8037 11.1594 -1.0700 47 1 7.4496 13.0654 -0.3679 48 1 4.1955 7.9445 0.6353 49 1 4.7029 8.3012 -1.0430 50 1 2.8915 3.8891 -2.1325 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082809841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:24 Heat of formation + Delta-G solvation = -14.668673 kcal Electronic energy + Delta-G solvation = -28341.341947 eV Core-core repulsion = 24625.967188 eV Total energy + Delta-G solvation = -3715.374758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.42209 -39.23311 -37.55960 -35.12699 -34.13089 -33.10069 -32.01388 -30.93600 -30.74104 -28.64927 -27.58162 -26.32909 -24.91077 -24.02147 -23.00897 -22.75411 -21.42716 -20.64707 -19.93448 -18.95156 -17.22926 -16.85495 -16.40561 -15.83675 -15.70545 -15.35707 -14.79038 -14.63278 -14.13459 -13.91981 -13.81624 -13.63890 -13.48523 -13.25073 -13.19908 -13.04674 -12.94486 -12.88048 -12.57594 -12.18682 -12.05942 -11.80567 -11.71757 -11.64378 -11.43458 -11.26729 -11.14200 -11.02708 -10.85030 -10.83332 -10.71117 -10.61693 -10.25918 -9.95495 -9.82472 -9.55921 -9.05612 -8.87041 -8.53382 -8.33704 -7.12788 -5.89650 -3.20505 1.29817 1.44054 2.83481 3.20369 3.35825 3.42348 3.44121 3.77976 4.46703 4.51684 4.62181 4.68761 4.74333 4.92322 4.98597 5.07843 5.11168 5.14917 5.17313 5.21202 5.25336 5.34510 5.45360 5.50221 5.50763 5.60405 5.64076 5.69540 5.73040 5.78328 5.79847 5.84225 5.89854 5.94480 5.98956 6.03752 6.07334 6.10810 6.20870 6.22719 6.33122 6.40699 6.44685 6.51740 6.57819 6.59491 6.64810 6.83556 7.00132 7.59435 7.79373 8.27471 8.38165 9.40022 9.93485 10.28513 11.32248 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.002572 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.609344 B =10882.284034 C =11934.473107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.065 4.065 7 C -0.067 4.067 8 H 0.103 0.897 9 C -0.149 4.149 10 C 0.531 3.469 11 O -0.545 6.545 12 N -0.612 5.612 13 C 0.117 3.883 14 C -0.113 4.113 15 H 0.084 0.916 16 C -0.134 4.134 17 C 0.176 3.824 18 H 0.065 0.935 19 N -0.711 5.711 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.072 3.928 29 C -0.079 4.079 30 C -0.121 4.121 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.387 0.613 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 -19.226 -0.752 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.065 4.065 7 C -0.088 4.088 8 H 0.121 0.879 9 C -0.206 4.206 10 C 0.319 3.681 11 O -0.423 6.423 12 N -0.345 5.345 13 C -0.006 4.006 14 C -0.133 4.133 15 H 0.102 0.898 16 C -0.191 4.191 17 C 0.064 3.936 18 H 0.082 0.918 19 N -0.351 5.351 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.054 4.054 29 C -0.097 4.097 30 C -0.139 4.139 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.222 0.778 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.578 -19.501 -0.817 21.741 hybrid contribution 0.788 0.481 0.556 1.078 sum -8.790 -19.020 -0.261 20.954 Atomic orbital electron populations 1.21752 0.94822 1.01447 1.02406 1.20521 0.96142 0.92833 1.02556 1.19848 0.99407 0.96154 0.93281 1.20894 1.00860 0.94870 0.97357 1.20994 0.99555 0.94939 0.97257 1.19335 0.99675 0.93965 0.93564 1.20216 0.95407 0.91625 1.01582 0.87941 1.21955 0.94294 1.04057 1.00340 1.20117 0.86935 0.81015 0.80028 1.90683 1.28306 1.73664 1.49671 1.48496 1.23252 1.06325 1.56451 1.21947 0.93720 0.87837 0.97088 1.22514 0.97341 0.92985 1.00430 0.89761 1.21654 0.97718 0.99033 1.00728 1.21431 0.88860 0.87719 0.95620 0.91751 1.42298 1.31697 1.50868 1.10190 1.19262 1.07678 1.22072 0.88776 0.90957 1.24762 0.99071 0.99695 0.96943 1.69661 1.30217 1.34122 1.23576 0.86133 0.80004 0.77829 0.82276 1.20465 1.21767 1.21790 1.23596 0.87244 0.95846 0.98725 1.20875 0.97300 0.93953 0.97614 1.20941 1.00687 0.94889 0.97358 0.92546 0.92491 0.92580 0.91225 0.91239 0.86349 0.86159 0.91374 0.92202 0.90293 0.92114 0.91758 0.92852 0.91424 0.93194 0.77839 0.93374 0.91204 0.90876 0.86418 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 5 C -0.11 -1.31 9.67 -39.58 -0.38 -1.69 16 6 C -0.06 -0.86 4.40 -104.62 -0.46 -1.32 16 7 C -0.07 -0.89 2.25 -92.93 -0.21 -1.10 16 8 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 9 C -0.15 -1.79 8.82 37.16 0.33 -1.47 16 10 C 0.53 8.47 7.08 -10.99 -0.08 8.39 16 11 O -0.55 -10.20 15.42 5.56 0.09 -10.12 16 12 N -0.61 -9.54 3.32 -170.53 -0.57 -10.11 16 13 C 0.12 1.75 6.46 -3.07 -0.02 1.73 16 14 C -0.11 -1.73 3.19 -88.65 -0.28 -2.01 16 15 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 16 C -0.13 -1.87 9.14 37.15 0.34 -1.53 16 17 C 0.18 3.17 3.14 -65.65 -0.21 2.97 16 18 H 0.06 1.20 8.03 -51.93 -0.42 0.79 16 19 N -0.71 -16.09 5.28 -51.22 -0.27 -16.36 16 20 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 21 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 24 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 C 0.07 1.16 4.84 -2.54 -0.01 1.15 16 29 C -0.08 -1.05 7.92 -39.58 -0.31 -1.36 16 30 C -0.12 -1.41 9.70 -39.59 -0.38 -1.79 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.23 7.95 -52.49 -0.42 0.81 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 7.41 -51.93 -0.38 0.33 16 40 H 0.08 1.01 4.99 -51.92 -0.26 0.75 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.95 7.82 -51.93 -0.41 0.55 16 43 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.39 9.40 7.72 -40.82 -0.31 9.09 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 49 H 0.07 1.24 7.07 -51.93 -0.37 0.88 16 50 H 0.12 1.57 7.52 -52.49 -0.39 1.18 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 405.81 15.07 6.12 6.12 Total: -1.00 -29.75 405.81 -10.35 -40.10 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.76 Total: 9.46 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.65 Total: -9.59 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.75 -10.35 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082809841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.429 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds