Wall clock time and date at job start Tue Mar 31 2020 16:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50709 * 109.46767 * 2 1 4 4 C 1.38231 * 119.99962 * 89.99689 * 3 2 1 5 5 C 1.38240 * 119.99616 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00107 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00011 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46854 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.46967 * 119.99757 * 7 6 5 10 10 C 1.50698 * 109.47279 * 239.99730 * 7 6 5 11 11 O 1.21282 * 119.99910 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00280 * 179.97438 * 10 7 6 13 13 C 1.47018 * 125.64993 * 180.02562 * 12 10 7 14 14 C 1.54325 * 107.40412 * 178.90064 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64489 * 0.04405 * 12 10 7 29 29 C 1.38241 * 119.99912 * 0.25272 * 6 5 4 30 30 C 1.38230 * 119.99668 * 359.49217 * 29 6 5 31 31 H 1.09001 * 109.47178 * 300.00187 * 1 2 3 32 32 H 1.09002 * 109.47144 * 60.00460 * 1 2 3 33 33 H 1.09004 * 109.46302 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47390 * 239.99656 * 2 1 3 35 35 H 1.09002 * 109.47144 * 119.99540 * 2 1 3 36 36 H 1.07993 * 120.00363 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99770 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47643 * 300.00242 * 9 7 6 39 39 H 1.09003 * 109.47134 * 60.00416 * 9 7 6 40 40 H 1.09009 * 109.47175 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.88241 * 298.39592 * 13 12 10 42 42 H 1.09000 * 109.88049 * 59.40721 * 13 12 10 43 43 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 44 44 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 45 45 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 46 46 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 47 47 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36956 * 322.93474 * 28 12 10 49 49 H 1.09001 * 110.36709 * 85.14667 * 28 12 10 50 50 H 1.07995 * 119.99747 * 179.73161 * 29 6 5 51 51 H 1.08002 * 119.99677 * 180.23213 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7228 3.3761 1.1970 6 6 2.9522 4.0281 -0.0001 7 6 3.4533 5.4493 -0.0002 8 1 3.5750 5.7917 1.0275 9 6 4.8008 5.5148 -0.7219 10 6 2.4597 6.3323 -0.7102 11 8 1.4444 5.8546 -1.1704 12 7 2.6989 7.6530 -0.8329 13 6 1.8188 8.6251 -1.4975 14 6 2.4829 10.0122 -1.3693 15 1 3.0544 10.2506 -2.2663 16 6 1.4342 11.0908 -1.0909 17 6 3.4274 9.8309 -0.1486 18 1 2.8832 9.9613 0.7868 19 7 4.5660 10.7497 -0.2235 20 6 5.2947 11.0303 0.9014 21 1 5.0298 10.5745 1.8440 22 6 6.3732 11.9013 0.8304 23 7 6.6958 12.4571 -0.3182 24 14 7.3677 12.2834 2.3648 25 1 6.8051 11.5361 3.5182 26 1 8.7803 11.8776 2.1530 27 1 7.3078 13.7409 2.6432 28 6 3.8867 8.3620 -0.3231 29 6 2.7164 3.3782 -1.1973 30 6 2.2612 2.0730 -1.1972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0830 1.5634 2.1324 37 1 2.9024 3.8854 2.1324 38 1 5.5195 4.8762 -0.2085 39 1 4.6796 5.1723 -1.7496 40 1 5.1631 6.5430 -0.7224 41 1 1.7059 8.3640 -2.5498 42 1 0.8432 8.6348 -1.0114 43 1 0.8977 10.8479 -0.1737 44 1 1.9271 12.0565 -0.9785 45 1 0.7306 11.1366 -1.9222 46 1 4.8037 11.1594 -1.0700 47 1 7.4496 13.0654 -0.3679 48 1 4.1955 7.9445 0.6353 49 1 4.7029 8.3012 -1.0430 50 1 2.8915 3.8891 -2.1325 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082809841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:22 Heat of formation + Delta-G solvation = -29.110977 kcal Electronic energy + Delta-G solvation = -28341.968212 eV Core-core repulsion = 24625.967188 eV Total energy + Delta-G solvation = -3716.001024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.59210 -40.26482 -38.87285 -36.06735 -35.85964 -34.24775 -33.17918 -32.41447 -31.81339 -29.49983 -29.14279 -27.51845 -26.09275 -25.54500 -23.99412 -23.66836 -22.70625 -21.64773 -21.26710 -20.14743 -19.08725 -18.05541 -17.56462 -17.08600 -16.77985 -16.37765 -16.19020 -15.77091 -15.45870 -15.31983 -14.88202 -14.61759 -14.54808 -14.49893 -14.38209 -14.28141 -14.02399 -13.93941 -13.69477 -13.34681 -13.13589 -13.05393 -12.88495 -12.85937 -12.71860 -12.54152 -12.34775 -12.12944 -12.08004 -12.03832 -11.96854 -11.71008 -11.65038 -11.62615 -11.37245 -10.99317 -10.77147 -9.77593 -9.67713 -9.41474 -9.01844 -7.92604 -5.21980 0.40247 0.54587 1.50751 1.52369 1.57416 1.60956 1.97436 2.58181 2.85843 3.37782 3.40185 3.57739 3.77141 3.78151 3.93106 3.95022 3.97727 4.11471 4.15155 4.17499 4.23684 4.36035 4.39119 4.47231 4.52522 4.56867 4.58672 4.66001 4.67846 4.72998 4.78184 4.85449 4.87673 4.90041 5.05567 5.07658 5.08485 5.11070 5.14407 5.19972 5.24165 5.24577 5.34739 5.38972 5.45549 5.53658 5.57870 5.71687 5.74545 6.13680 6.28246 6.50451 7.10836 7.36461 8.07436 8.31975 9.30294 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.002572 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.609344 B =10882.284034 C =11934.473107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.083 4.083 7 C -0.062 4.062 8 H 0.114 0.886 9 C -0.143 4.143 10 C 0.529 3.471 11 O -0.574 6.574 12 N -0.611 5.611 13 C 0.119 3.881 14 C -0.102 4.102 15 H 0.079 0.921 16 C -0.129 4.129 17 C 0.169 3.831 18 H 0.062 0.938 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.079 0.921 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.298 1.298 28 C 0.087 3.913 29 C -0.098 4.098 30 C -0.131 4.131 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.377 0.623 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -21.172 0.527 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.083 4.083 8 H 0.132 0.868 9 C -0.200 4.200 10 C 0.319 3.681 11 O -0.454 6.454 12 N -0.344 5.344 13 C -0.004 4.004 14 C -0.122 4.122 15 H 0.098 0.902 16 C -0.186 4.186 17 C 0.059 3.941 18 H 0.080 0.920 19 N -0.358 5.358 20 C -0.368 4.368 21 H 0.097 0.903 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.796 3.204 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.226 1.226 28 C -0.039 4.039 29 C -0.116 4.116 30 C -0.149 4.149 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.210 0.790 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.124 0.876 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.372 -21.482 0.480 23.859 hybrid contribution 0.912 0.995 0.131 1.356 sum -9.460 -20.487 0.611 22.574 Atomic orbital electron populations 1.21743 0.94550 1.02386 1.01629 1.20578 0.96243 0.91256 1.03785 1.20201 0.98397 0.97408 0.92853 1.21231 1.00045 0.94626 0.98461 1.21250 0.99429 0.95583 0.97378 1.19412 1.00855 0.93946 0.94144 1.20223 0.94932 0.91368 1.01765 0.86791 1.21902 0.94051 1.03736 1.00317 1.20616 0.86962 0.80988 0.79540 1.90665 1.29702 1.74056 1.50965 1.48515 1.23010 1.06534 1.56340 1.21961 0.93744 0.87228 0.97461 1.22421 0.97058 0.93854 0.98862 0.90233 1.21614 0.97560 0.97416 1.02040 1.21579 0.87994 0.87779 0.96771 0.92036 1.42385 1.32671 1.51778 1.09013 1.19609 1.06998 1.20515 0.89687 0.90271 1.25469 1.00747 1.00658 0.99327 1.69801 1.30913 1.35454 1.25427 0.85183 0.78305 0.77070 0.79846 1.18902 1.22327 1.22567 1.23271 0.87114 0.94538 0.98979 1.20923 0.98500 0.94833 0.97328 1.21172 1.00570 0.94544 0.98584 0.93034 0.93560 0.90814 0.90295 0.89758 0.84046 0.84673 0.89843 0.92547 0.91158 0.91634 0.91220 0.92258 0.93159 0.90875 0.79046 0.94098 0.90420 0.91578 0.87598 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.89 71.98 0.71 -1.24 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.94 16 3 C -0.09 -1.74 5.13 -19.86 -0.10 -1.85 16 4 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 5 C -0.12 -2.64 9.67 22.27 0.22 -2.42 16 6 C -0.08 -2.13 4.40 -19.87 -0.09 -2.22 16 7 C -0.06 -1.58 2.25 -12.29 -0.03 -1.61 16 8 H 0.11 2.61 7.58 -2.39 -0.02 2.59 16 9 C -0.14 -3.33 8.82 71.98 0.63 -2.69 16 10 C 0.53 16.56 7.08 87.66 0.62 17.18 16 11 O -0.57 -21.33 15.42 -3.04 -0.05 -21.38 16 12 N -0.61 -18.53 3.32 -811.82 -2.70 -21.23 16 13 C 0.12 3.41 6.46 86.73 0.56 3.97 16 14 C -0.10 -3.05 3.19 -9.52 -0.03 -3.08 16 15 H 0.08 2.47 8.00 -2.39 -0.02 2.46 16 16 C -0.13 -3.44 9.14 71.98 0.66 -2.78 16 17 C 0.17 5.99 3.14 46.47 0.15 6.14 16 18 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 19 N -0.72 -32.58 5.28 -315.98 -1.67 -34.25 16 20 C -0.24 -11.96 9.98 84.03 0.84 -11.12 16 21 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.97 -55.91 13.06 21.65 0.28 -55.62 16 24 Si 0.97 43.71 29.55 68.60 2.03 45.73 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 C 0.09 2.74 4.84 86.85 0.42 3.16 16 29 C -0.10 -2.56 7.92 22.27 0.18 -2.39 16 30 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 36 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.14 2.49 7.95 -2.91 -0.02 2.46 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.33 7.41 -2.39 -0.02 1.32 16 40 H 0.07 1.75 4.99 -2.38 -0.01 1.74 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.95 7.82 -2.39 -0.02 1.94 16 43 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.38 18.58 7.72 -92.71 -0.72 17.87 16 47 H 0.25 14.18 8.31 -92.72 -0.77 13.40 16 48 H 0.08 2.34 7.36 -2.39 -0.02 2.32 16 49 H 0.07 2.22 7.07 -2.39 -0.02 2.21 16 50 H 0.11 2.92 7.52 -2.91 -0.02 2.89 16 51 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -63.37 405.81 3.90 -59.47 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.19 Total: 37.42 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.81 Total: -10.14 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.08 Total: -111.10 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.37 3.90 -59.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082809841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.361 kcal (2) G-P(sol) polarization free energy of solvation -63.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds