Wall clock time and date at job start Tue Mar 31 2020 16:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47147 * 2 1 4 4 C 1.38232 * 119.99970 * 89.99448 * 3 2 1 5 5 C 1.38236 * 119.99793 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99997 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99567 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47607 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47019 * 239.99804 * 7 6 5 10 10 C 1.50704 * 109.46855 * 120.00286 * 7 6 5 11 11 O 1.21283 * 120.00082 * 94.89497 * 10 7 6 12 12 N 1.34780 * 119.99861 * 274.88659 * 10 7 6 13 13 C 1.47025 * 125.64430 * 174.89930 * 12 10 7 14 14 C 1.54323 * 107.26640 * 178.97825 * 13 12 10 15 15 H 1.08996 * 110.87681 * 96.24107 * 14 13 12 16 16 C 1.53007 * 110.71944 * 219.44180 * 14 13 12 17 17 C 1.55153 * 102.94425 * 337.80163 * 14 13 12 18 18 H 1.09000 * 111.01100 * 277.39282 * 17 14 13 19 19 N 1.46507 * 111.00588 * 153.57889 * 17 14 13 20 20 C 1.36933 * 119.99805 * 158.18229 * 19 17 14 21 21 H 1.08000 * 120.00561 * 0.02562 * 20 19 17 22 22 C 1.38819 * 119.99500 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99605 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99982 * 0.27361 * 22 20 19 25 25 H 1.48498 * 109.47204 * 269.72302 * 24 22 20 26 26 H 1.48497 * 109.47143 * 29.72676 * 24 22 20 27 27 H 1.48500 * 109.47017 * 149.72612 * 24 22 20 28 28 C 1.47458 * 125.62876 * 354.89887 * 12 10 7 29 29 C 1.38236 * 119.99913 * 0.25270 * 6 5 4 30 30 C 1.38230 * 119.99947 * 359.49131 * 29 6 5 31 31 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46856 * 299.99882 * 1 2 3 33 33 H 1.08998 * 109.46863 * 59.99980 * 1 2 3 34 34 H 1.08993 * 109.46956 * 240.00049 * 2 1 3 35 35 H 1.09004 * 109.46686 * 119.99580 * 2 1 3 36 36 H 1.07997 * 120.00116 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99922 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.47291 * 304.96738 * 9 7 6 39 39 H 1.08995 * 109.47088 * 64.96849 * 9 7 6 40 40 H 1.09002 * 109.47427 * 184.96662 * 9 7 6 41 41 H 1.08993 * 109.88572 * 59.55947 * 13 12 10 42 42 H 1.09004 * 110.01234 * 298.46053 * 13 12 10 43 43 H 1.08997 * 109.46944 * 173.52016 * 16 14 13 44 44 H 1.09003 * 109.46816 * 293.52135 * 16 14 13 45 45 H 1.09003 * 109.46829 * 53.51691 * 16 14 13 46 46 H 0.96996 * 119.99375 * 338.18108 * 19 17 14 47 47 H 0.96999 * 119.99870 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.34989 * 85.25519 * 28 12 10 49 49 H 1.09005 * 110.40850 * 322.91283 * 28 12 10 50 50 H 1.08001 * 119.99503 * 179.72743 * 29 6 5 51 51 H 1.07998 * 119.99921 * 180.22753 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4537 5.4491 0.0000 8 1 3.5753 5.7915 1.0276 9 6 2.4450 6.3456 -0.7208 10 6 4.7810 5.5136 -0.7109 11 8 4.8250 5.8021 -1.8881 12 7 5.9191 5.2509 -0.0384 13 6 7.2640 5.1739 -0.6274 14 6 8.2509 4.8776 0.5214 15 1 8.4604 3.8100 0.5877 16 6 9.5464 5.6713 0.3403 17 6 7.4797 5.3648 1.7764 18 1 7.5874 6.4414 1.9078 19 7 7.9193 4.6458 2.9749 20 6 7.7204 5.1942 4.2137 21 1 7.2390 6.1564 4.3075 22 6 8.1375 4.5132 5.3492 23 7 7.9458 5.0400 6.5401 24 14 8.9770 2.8524 5.1866 25 1 7.9553 1.7754 5.2257 26 1 9.7102 2.7926 3.8967 27 1 9.9327 2.6690 6.3083 28 6 6.0211 4.9933 1.4099 29 6 2.7167 3.3781 -1.1972 30 6 2.2615 2.0729 -1.1972 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0830 1.5633 2.1324 37 1 2.9025 3.8853 2.1324 38 1 2.2573 5.9515 -1.7196 39 1 1.5119 6.3684 -0.1579 40 1 2.8472 7.3558 -0.7985 41 1 7.5175 6.1237 -1.0982 42 1 7.3027 4.3726 -1.3653 43 1 10.1801 5.5373 1.2170 44 1 10.0711 5.3131 -0.5455 45 1 9.3109 6.7287 0.2203 46 1 8.3513 3.7815 2.8906 47 1 8.2376 4.5644 7.3335 48 1 5.8331 3.9407 1.6218 49 1 5.3201 5.6227 1.9582 50 1 2.8918 3.8890 -2.1325 51 1 2.0808 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082809842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:29 Heat of formation + Delta-G solvation = -14.312723 kcal Electronic energy + Delta-G solvation = -28896.584360 eV Core-core repulsion = 25181.225037 eV Total energy + Delta-G solvation = -3715.359323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.43904 -39.25035 -37.75467 -35.15992 -34.22667 -32.79792 -32.27257 -31.08535 -30.94674 -28.62885 -27.94548 -26.76098 -24.64345 -23.87162 -22.96426 -22.72623 -21.33928 -20.70307 -20.13205 -18.79804 -17.63061 -17.04593 -16.71852 -15.88199 -15.59711 -15.29924 -15.05607 -14.47197 -14.23107 -13.91453 -13.82381 -13.66240 -13.45707 -13.30951 -13.24999 -13.17019 -12.81527 -12.71714 -12.58930 -12.40447 -12.14098 -11.92520 -11.75488 -11.69852 -11.49550 -11.43438 -11.28741 -11.13334 -10.89568 -10.86596 -10.75217 -10.66182 -10.38527 -10.03856 -9.75239 -9.67507 -9.08090 -8.93090 -8.53684 -8.39620 -7.42983 -5.88460 -3.26409 1.23769 1.39349 2.77389 3.16114 3.29816 3.32710 3.38902 3.70107 4.48528 4.54096 4.56394 4.69521 4.75783 4.89554 4.95938 4.97586 4.99948 5.09332 5.14607 5.17602 5.27903 5.35144 5.40615 5.44273 5.47653 5.49680 5.65726 5.67608 5.69149 5.72574 5.75432 5.78309 5.83052 5.86131 5.93000 6.03083 6.05262 6.08901 6.10226 6.13944 6.25983 6.31815 6.39512 6.43131 6.49208 6.56928 6.59880 6.72365 6.96515 7.73160 7.85630 8.29829 8.32204 9.06666 9.78968 9.97267 11.29141 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003873 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.074889 B = 7227.024867 C = 8942.699788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.077 4.077 7 C -0.069 4.069 8 H 0.100 0.900 9 C -0.128 4.128 10 C 0.537 3.463 11 O -0.551 6.551 12 N -0.611 5.611 13 C 0.117 3.883 14 C -0.117 4.117 15 H 0.081 0.919 16 C -0.135 4.135 17 C 0.182 3.818 18 H 0.075 0.925 19 N -0.734 5.734 20 C -0.253 4.253 21 H 0.092 0.908 22 C 0.011 3.989 23 N -0.929 5.929 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.276 1.276 27 H -0.290 1.290 28 C 0.074 3.926 29 C -0.104 4.104 30 C -0.119 4.119 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.364 0.636 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.124 0.876 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -5.340 -14.921 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.134 4.134 5 C -0.120 4.120 6 C -0.077 4.077 7 C -0.090 4.090 8 H 0.118 0.882 9 C -0.185 4.185 10 C 0.325 3.675 11 O -0.429 6.429 12 N -0.344 5.344 13 C -0.006 4.006 14 C -0.137 4.137 15 H 0.099 0.901 16 C -0.193 4.193 17 C 0.071 3.929 18 H 0.093 0.907 19 N -0.375 5.375 20 C -0.382 4.382 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.202 1.202 27 H -0.216 1.216 28 C -0.051 4.051 29 C -0.122 4.122 30 C -0.137 4.137 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.198 0.802 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.142 0.858 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.285 -5.014 -15.344 19.696 hybrid contribution 0.649 -1.293 0.204 1.462 sum -10.636 -6.307 -15.140 19.548 Atomic orbital electron populations 1.21743 0.94774 1.01564 1.02221 1.20543 0.96122 0.92796 1.02818 1.19899 0.99118 0.96148 0.93246 1.21007 1.00023 0.94760 0.97567 1.21127 0.98524 0.94835 0.97516 1.19391 1.00434 0.94252 0.93631 1.20278 0.92821 0.94048 1.01871 0.88166 1.21640 0.97423 0.98792 1.00678 1.20100 0.84460 0.76244 0.86660 1.90649 1.87059 1.49067 1.16147 1.48502 1.06383 1.69123 1.10343 1.21940 0.81485 1.01354 0.95806 1.22531 0.95072 1.00945 0.95162 0.90075 1.21682 0.96327 0.99558 1.01732 1.21333 0.89338 0.96775 0.85500 0.90679 1.42639 1.71223 1.21701 1.01977 1.19055 1.33837 1.03778 0.81543 0.89005 1.24662 1.00590 0.98185 0.95085 1.69696 1.51889 1.38921 0.97015 0.86600 0.79730 0.85388 0.77112 1.20980 1.20204 1.21625 1.23446 1.02102 1.01301 0.78291 1.21054 0.98591 0.94698 0.97877 1.20951 1.00606 0.94740 0.97428 0.92516 0.92493 0.92624 0.91187 0.90996 0.85964 0.85528 0.91543 0.91831 0.91951 0.91459 0.92109 0.91451 0.93101 0.92550 0.80246 0.92889 0.91269 0.90853 0.85785 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.09 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.08 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 5 C -0.10 -1.28 9.67 -39.58 -0.38 -1.66 16 6 C -0.08 -0.99 4.77 -104.62 -0.50 -1.49 16 7 C -0.07 -0.90 2.45 -92.92 -0.23 -1.13 16 8 H 0.10 1.25 6.41 -51.93 -0.33 0.92 16 9 C -0.13 -1.48 8.52 37.16 0.32 -1.16 16 10 C 0.54 8.44 6.58 -10.98 -0.07 8.37 16 11 O -0.55 -9.95 16.53 5.55 0.09 -9.85 16 12 N -0.61 -9.48 3.33 -170.48 -0.57 -10.05 16 13 C 0.12 1.71 6.47 -3.06 -0.02 1.69 16 14 C -0.12 -1.73 3.19 -88.78 -0.28 -2.01 16 15 H 0.08 1.20 7.99 -51.93 -0.42 0.79 16 16 C -0.14 -1.81 9.16 37.16 0.34 -1.47 16 17 C 0.18 3.21 3.14 -65.78 -0.21 3.01 16 18 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 19 N -0.73 -15.83 5.06 -51.34 -0.26 -16.09 16 20 C -0.25 -6.59 10.46 -15.06 -0.16 -6.75 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 23 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 24 Si 0.88 20.96 27.74 -169.99 -4.71 16.24 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 C 0.07 1.21 6.32 -2.51 -0.02 1.19 16 29 C -0.10 -1.32 8.76 -39.58 -0.35 -1.67 16 30 C -0.12 -1.36 9.70 -39.59 -0.38 -1.74 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.50 7.95 -52.49 -0.42 1.09 16 38 H 0.07 0.79 7.10 -51.93 -0.37 0.43 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 46 H 0.36 7.80 5.59 -40.82 -0.23 7.57 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.07 1.17 6.92 -51.93 -0.36 0.81 16 50 H 0.12 1.61 7.53 -52.49 -0.40 1.21 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -30.56 408.12 -10.12 -40.68 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.84 Total: 9.44 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.76 Total: -9.48 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.05 Total: -53.17 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.56 -10.12 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082809842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.366 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds