Wall clock time and date at job start Tue Mar 31 2020 16:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47147 * 2 1 4 4 C 1.38232 * 119.99970 * 89.99448 * 3 2 1 5 5 C 1.38236 * 119.99793 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99997 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99567 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47607 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47019 * 239.99804 * 7 6 5 10 10 C 1.50704 * 109.46855 * 120.00286 * 7 6 5 11 11 O 1.21283 * 120.00082 * 94.89497 * 10 7 6 12 12 N 1.34780 * 119.99861 * 274.88659 * 10 7 6 13 13 C 1.47025 * 125.64430 * 174.89930 * 12 10 7 14 14 C 1.54323 * 107.26640 * 178.97825 * 13 12 10 15 15 H 1.08996 * 110.87681 * 96.24107 * 14 13 12 16 16 C 1.53007 * 110.71944 * 219.44180 * 14 13 12 17 17 C 1.55153 * 102.94425 * 337.80163 * 14 13 12 18 18 H 1.09000 * 111.01100 * 277.39282 * 17 14 13 19 19 N 1.46507 * 111.00588 * 153.57889 * 17 14 13 20 20 C 1.36933 * 119.99805 * 158.18229 * 19 17 14 21 21 H 1.08000 * 120.00561 * 0.02562 * 20 19 17 22 22 C 1.38819 * 119.99500 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99605 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99982 * 0.27361 * 22 20 19 25 25 H 1.48498 * 109.47204 * 269.72302 * 24 22 20 26 26 H 1.48497 * 109.47143 * 29.72676 * 24 22 20 27 27 H 1.48500 * 109.47017 * 149.72612 * 24 22 20 28 28 C 1.47458 * 125.62876 * 354.89887 * 12 10 7 29 29 C 1.38236 * 119.99913 * 0.25270 * 6 5 4 30 30 C 1.38230 * 119.99947 * 359.49131 * 29 6 5 31 31 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46856 * 299.99882 * 1 2 3 33 33 H 1.08998 * 109.46863 * 59.99980 * 1 2 3 34 34 H 1.08993 * 109.46956 * 240.00049 * 2 1 3 35 35 H 1.09004 * 109.46686 * 119.99580 * 2 1 3 36 36 H 1.07997 * 120.00116 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99922 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.47291 * 304.96738 * 9 7 6 39 39 H 1.08995 * 109.47088 * 64.96849 * 9 7 6 40 40 H 1.09002 * 109.47427 * 184.96662 * 9 7 6 41 41 H 1.08993 * 109.88572 * 59.55947 * 13 12 10 42 42 H 1.09004 * 110.01234 * 298.46053 * 13 12 10 43 43 H 1.08997 * 109.46944 * 173.52016 * 16 14 13 44 44 H 1.09003 * 109.46816 * 293.52135 * 16 14 13 45 45 H 1.09003 * 109.46829 * 53.51691 * 16 14 13 46 46 H 0.96996 * 119.99375 * 338.18108 * 19 17 14 47 47 H 0.96999 * 119.99870 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.34989 * 85.25519 * 28 12 10 49 49 H 1.09005 * 110.40850 * 322.91283 * 28 12 10 50 50 H 1.08001 * 119.99503 * 179.72743 * 29 6 5 51 51 H 1.07998 * 119.99921 * 180.22753 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4537 5.4491 0.0000 8 1 3.5753 5.7915 1.0276 9 6 2.4450 6.3456 -0.7208 10 6 4.7810 5.5136 -0.7109 11 8 4.8250 5.8021 -1.8881 12 7 5.9191 5.2509 -0.0384 13 6 7.2640 5.1739 -0.6274 14 6 8.2509 4.8776 0.5214 15 1 8.4604 3.8100 0.5877 16 6 9.5464 5.6713 0.3403 17 6 7.4797 5.3648 1.7764 18 1 7.5874 6.4414 1.9078 19 7 7.9193 4.6458 2.9749 20 6 7.7204 5.1942 4.2137 21 1 7.2390 6.1564 4.3075 22 6 8.1375 4.5132 5.3492 23 7 7.9458 5.0400 6.5401 24 14 8.9770 2.8524 5.1866 25 1 7.9553 1.7754 5.2257 26 1 9.7102 2.7926 3.8967 27 1 9.9327 2.6690 6.3083 28 6 6.0211 4.9933 1.4099 29 6 2.7167 3.3781 -1.1972 30 6 2.2615 2.0729 -1.1972 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0830 1.5633 2.1324 37 1 2.9025 3.8853 2.1324 38 1 2.2573 5.9515 -1.7196 39 1 1.5119 6.3684 -0.1579 40 1 2.8472 7.3558 -0.7985 41 1 7.5175 6.1237 -1.0982 42 1 7.3027 4.3726 -1.3653 43 1 10.1801 5.5373 1.2170 44 1 10.0711 5.3131 -0.5455 45 1 9.3109 6.7287 0.2203 46 1 8.3513 3.7815 2.8906 47 1 8.2376 4.5644 7.3335 48 1 5.8331 3.9407 1.6218 49 1 5.3201 5.6227 1.9582 50 1 2.8918 3.8890 -2.1325 51 1 2.0808 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082809842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:27 Heat of formation + Delta-G solvation = -29.680212 kcal Electronic energy + Delta-G solvation = -28897.250745 eV Core-core repulsion = 25181.225037 eV Total energy + Delta-G solvation = -3716.025708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60106 -40.29469 -39.06099 -36.09482 -35.96663 -34.02141 -33.38782 -32.81504 -31.86881 -29.49951 -29.45449 -27.89302 -25.78153 -25.36645 -23.93640 -23.72634 -22.69632 -21.72260 -21.47886 -19.98162 -19.51574 -18.27271 -17.83403 -17.09240 -16.73940 -16.39537 -16.20717 -15.98317 -15.52853 -15.02364 -14.82941 -14.72881 -14.61854 -14.57143 -14.49406 -14.37713 -14.06513 -13.97725 -13.54401 -13.44352 -13.32349 -13.13279 -12.99968 -12.92595 -12.84283 -12.55799 -12.32278 -12.23687 -12.16229 -12.02162 -11.92642 -11.80286 -11.71653 -11.65234 -11.43144 -11.04969 -10.88236 -9.86245 -9.72804 -9.46889 -9.32450 -8.00348 -5.35668 0.31219 0.46303 1.41564 1.43285 1.50594 1.53905 1.94050 2.50234 2.76567 3.27282 3.29439 3.62188 3.66036 3.74530 3.82622 3.85547 3.93459 4.04091 4.06134 4.09116 4.24692 4.32164 4.36350 4.39649 4.49746 4.53950 4.55149 4.64884 4.65625 4.70310 4.80457 4.82984 4.85990 4.92991 5.03920 5.06029 5.06687 5.08585 5.11333 5.16104 5.17082 5.22628 5.30690 5.37953 5.42676 5.48797 5.63595 5.70231 5.78850 6.06361 6.22695 6.45849 7.05406 7.08817 7.81246 8.00846 9.20472 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003873 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.074889 B = 7227.024867 C = 8942.699788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.086 4.086 7 C -0.066 4.066 8 H 0.104 0.896 9 C -0.124 4.124 10 C 0.535 3.465 11 O -0.575 6.575 12 N -0.612 5.612 13 C 0.117 3.883 14 C -0.105 4.105 15 H 0.087 0.913 16 C -0.132 4.132 17 C 0.175 3.825 18 H 0.064 0.936 19 N -0.734 5.734 20 C -0.230 4.230 21 H 0.062 0.938 22 C -0.055 4.055 23 N -0.980 5.980 24 Si 0.947 3.053 25 H -0.280 1.280 26 H -0.249 1.249 27 H -0.300 1.300 28 C 0.088 3.912 29 C -0.115 4.115 30 C -0.122 4.122 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.368 0.632 47 H 0.257 0.743 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.117 0.883 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -7.194 -16.654 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.142 4.142 5 C -0.131 4.131 6 C -0.087 4.087 7 C -0.087 4.087 8 H 0.122 0.878 9 C -0.181 4.181 10 C 0.325 3.675 11 O -0.455 6.455 12 N -0.344 5.344 13 C -0.005 4.005 14 C -0.125 4.125 15 H 0.105 0.895 16 C -0.190 4.190 17 C 0.064 3.936 18 H 0.082 0.918 19 N -0.376 5.376 20 C -0.361 4.361 21 H 0.080 0.920 22 C -0.247 4.247 23 N -0.630 5.630 24 Si 0.774 3.226 25 H -0.206 1.206 26 H -0.174 1.174 27 H -0.227 1.227 28 C -0.038 4.038 29 C -0.133 4.133 30 C -0.140 4.140 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.202 0.798 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.135 0.865 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.400 -6.866 -17.144 21.704 hybrid contribution 0.620 -0.648 0.671 1.120 sum -10.780 -7.515 -16.473 21.073 Atomic orbital electron populations 1.21723 0.93912 1.02456 1.01948 1.20599 0.96782 0.91266 1.03554 1.20196 0.98171 0.97247 0.92780 1.21240 0.99827 0.94575 0.98536 1.21228 0.99050 0.95403 0.97426 1.19378 1.01237 0.94096 0.93965 1.20301 0.91795 0.94838 1.01807 0.87819 1.21626 0.97794 0.98198 1.00499 1.20543 0.85147 0.75391 0.86439 1.90633 1.87455 1.50200 1.17231 1.48538 1.06967 1.69001 1.09908 1.22001 0.80843 1.01923 0.95756 1.22456 0.95419 1.01404 0.93174 0.89452 1.21664 0.95408 0.99653 1.02247 1.21464 0.90732 0.95943 0.85419 0.91763 1.42535 1.71525 1.21994 1.01562 1.18988 1.31487 1.02293 0.83348 0.92035 1.25399 1.02348 1.02235 0.94692 1.69870 1.54320 1.40917 0.97912 0.85535 0.78598 0.80648 0.77772 1.20576 1.17364 1.22711 1.23129 1.00853 1.00957 0.78855 1.21096 0.99285 0.95411 0.97487 1.21196 0.99996 0.94324 0.98508 0.91067 0.92962 0.92720 0.90202 0.90536 0.84770 0.85469 0.92095 0.90069 0.92171 0.91031 0.91295 0.92823 0.90584 0.92298 0.79759 0.93372 0.91639 0.90960 0.86478 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.90 71.98 0.71 -1.15 16 2 C -0.08 -1.27 6.06 29.85 0.18 -1.09 16 3 C -0.08 -1.70 5.13 -19.87 -0.10 -1.80 16 4 C -0.12 -2.73 9.70 22.27 0.22 -2.52 16 5 C -0.11 -2.74 9.67 22.27 0.22 -2.53 16 6 C -0.09 -2.17 4.77 -19.87 -0.09 -2.27 16 7 C -0.07 -1.70 2.45 -12.29 -0.03 -1.73 16 8 H 0.10 2.54 6.41 -2.39 -0.02 2.53 16 9 C -0.12 -2.79 8.52 71.98 0.61 -2.17 16 10 C 0.54 16.44 6.58 87.66 0.58 17.01 16 11 O -0.57 -20.40 16.53 -3.04 -0.05 -20.45 16 12 N -0.61 -18.32 3.33 -811.68 -2.70 -21.03 16 13 C 0.12 3.19 6.47 86.73 0.56 3.76 16 14 C -0.10 -2.88 3.19 -9.60 -0.03 -2.91 16 15 H 0.09 2.34 7.99 -2.39 -0.02 2.32 16 16 C -0.13 -3.23 9.16 71.98 0.66 -2.57 16 17 C 0.17 5.99 3.14 46.38 0.15 6.14 16 18 H 0.06 2.36 8.02 -2.39 -0.02 2.34 16 19 N -0.73 -30.91 5.06 -316.35 -1.60 -32.51 16 20 C -0.23 -12.11 10.46 84.04 0.88 -11.24 16 21 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 22 C -0.05 -3.04 5.50 84.86 0.47 -2.58 16 23 N -0.98 -60.14 13.97 21.65 0.30 -59.84 16 24 Si 0.95 42.91 27.74 68.60 1.90 44.81 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.25 -10.05 6.52 99.48 0.65 -9.41 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 C 0.09 2.78 6.32 86.85 0.55 3.33 16 29 C -0.11 -2.81 8.76 22.27 0.20 -2.62 16 30 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 35 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 36 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.13 2.97 7.95 -2.91 -0.02 2.95 16 38 H 0.06 1.43 7.10 -2.39 -0.02 1.42 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.91 7.76 -2.39 -0.02 1.89 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 46 H 0.37 14.97 5.59 -92.71 -0.52 14.45 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 2.29 6.92 -2.38 -0.02 2.28 16 50 H 0.12 2.99 7.53 -2.91 -0.02 2.97 16 51 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -65.72 408.12 4.10 -61.62 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.32 Total: 36.70 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.93 Total: -9.31 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.00 Total: -113.38 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -65.72 4.10 -61.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082809842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.943 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds