Wall clock time and date at job start Tue Mar 31 2020 16:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38247 * 120.00188 * 265.00509 * 3 2 1 5 5 C 1.38219 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99865 * 0.02562 * 6 5 4 8 8 C 1.38219 * 119.99736 * 84.73007 * 3 2 1 9 9 C 1.50709 * 119.99984 * 359.97438 * 8 3 2 10 10 C 1.50700 * 109.47266 * 84.99868 * 9 8 3 11 11 O 1.21282 * 119.99466 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99655 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47446 * 34.99919 * 13 12 10 15 15 C 1.53007 * 109.46998 * 274.99585 * 13 12 10 16 16 C 1.52995 * 109.47239 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47036 * 60.00015 * 16 15 13 18 18 C 1.53001 * 109.47400 * 300.00053 * 17 16 15 19 19 C 1.53000 * 109.46975 * 155.00429 * 13 12 10 20 20 H 1.08997 * 109.47450 * 59.99492 * 19 13 12 21 21 N 1.46506 * 109.46637 * 299.99302 * 19 13 12 22 22 C 1.36940 * 119.99581 * 155.00314 * 21 19 13 23 23 H 1.08001 * 120.00419 * 359.97438 * 22 21 19 24 24 C 1.38820 * 119.99748 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99562 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99961 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47198 * 119.99515 * 26 24 22 29 29 H 1.48493 * 109.47074 * 239.99755 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 34 34 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 35 35 H 1.07997 * 120.00191 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99890 * 180.02562 * 5 4 3 37 37 H 1.07996 * 119.99841 * 180.02562 * 6 5 4 38 38 H 1.08003 * 120.00137 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47084 * 205.00027 * 9 8 3 40 40 H 1.09002 * 109.46635 * 324.99889 * 9 8 3 41 41 H 0.97001 * 119.99900 * 0.02562 * 12 10 9 42 42 H 1.08997 * 109.47295 * 300.00427 * 15 13 12 43 43 H 1.09005 * 109.46758 * 60.00298 * 15 13 12 44 44 H 1.08997 * 109.47199 * 180.02562 * 16 15 13 45 45 H 1.09006 * 109.47484 * 300.00304 * 16 15 13 46 46 H 1.08997 * 109.46864 * 60.00110 * 17 16 15 47 47 H 1.09003 * 109.47395 * 179.97438 * 17 16 15 48 48 H 1.09000 * 109.47492 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.47159 * 299.99876 * 18 17 16 50 50 H 0.96995 * 120.00297 * 335.00756 * 21 19 13 51 51 H 0.97000 * 119.99083 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1927 5 6 2.8213 3.3411 -1.1926 6 6 2.9525 4.0279 0.0001 7 6 2.6238 3.4111 1.1924 8 6 2.1591 2.1090 1.1920 9 6 1.7943 1.4386 2.4915 10 6 2.9709 0.6418 2.9934 11 8 4.0038 0.6200 2.3580 12 7 2.8750 -0.0474 4.1476 13 6 4.0190 -0.8215 4.6357 14 1 4.9434 -0.3020 4.3836 15 6 4.0159 -2.2042 3.9806 16 6 5.2103 -3.0129 4.4907 17 6 5.1098 -3.1680 6.0095 18 6 5.1128 -1.7853 6.6647 19 6 3.9190 -0.9767 6.1545 20 1 2.9945 -1.4962 6.4066 21 7 3.9219 0.3473 6.7819 22 6 3.3481 0.5229 8.0128 23 1 2.8930 -0.3145 8.5209 24 6 3.3504 1.7775 8.6070 25 7 3.9045 2.7980 7.9874 26 14 2.5670 2.0172 10.2857 27 1 2.0173 0.7235 10.7647 28 1 3.5905 2.5059 11.2443 29 1 1.4702 3.0128 10.1825 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.2583 1.5015 -2.1244 36 1 3.0778 3.8233 -2.1244 37 1 3.3117 5.0464 0.0000 38 1 2.7259 3.9477 2.1242 39 1 1.5274 2.1960 3.2286 40 1 0.9463 0.7727 2.3313 41 1 2.0485 -0.0308 4.6551 42 1 3.0915 -2.7237 4.2327 43 1 4.0871 -2.0936 2.8985 44 1 5.2084 -3.9977 4.0237 45 1 6.1350 -2.4935 4.2390 46 1 4.1852 -3.6873 6.2613 47 1 5.9604 -3.7445 6.3730 48 1 5.0408 -1.8958 7.7467 49 1 6.0375 -1.2660 6.4130 50 1 4.3302 1.0994 6.3253 51 1 3.9064 3.6745 8.4029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085241355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:41 Heat of formation + Delta-G solvation = -32.000403 kcal Electronic energy + Delta-G solvation = -29049.186843 eV Core-core repulsion = 25333.060524 eV Total energy + Delta-G solvation = -3716.126319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18129 -39.11234 -37.63004 -34.31400 -34.04394 -33.64693 -32.47388 -31.15089 -29.65548 -29.32661 -28.00682 -26.91185 -23.89215 -23.73110 -22.56908 -21.70542 -21.07191 -20.57163 -19.95465 -19.32258 -17.27671 -16.64818 -16.41279 -16.03337 -15.85245 -15.05277 -14.83943 -14.45922 -14.13309 -13.89098 -13.77355 -13.67535 -13.55415 -13.32537 -13.10219 -12.97916 -12.89006 -12.58136 -12.28462 -12.08784 -12.05810 -11.79271 -11.73061 -11.29907 -11.09039 -10.94552 -10.83621 -10.79526 -10.75053 -10.65954 -10.54783 -10.32142 -10.15022 -9.75645 -9.64542 -9.47196 -8.94434 -8.69547 -8.52288 -8.48900 -7.00119 -5.80182 -3.09702 1.41925 1.49456 3.04565 3.39286 3.45373 3.47644 3.54480 3.95215 4.53785 4.68472 4.76797 4.93642 5.00680 5.07206 5.11454 5.13478 5.19764 5.26414 5.30754 5.40486 5.47262 5.51819 5.54132 5.55881 5.60827 5.68833 5.72677 5.81907 5.83630 5.89757 5.90318 5.96710 5.98720 6.03733 6.12146 6.15962 6.21802 6.33523 6.46088 6.49383 6.53100 6.55215 6.58949 6.59249 6.74402 6.86939 6.93338 7.09273 7.11312 7.66070 7.98320 8.37156 8.66840 9.49028 10.05789 10.41099 11.41863 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003626 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.141625 B = 7719.788374 C = 9385.426245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.066 4.066 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.055 4.055 9 C -0.110 4.110 10 C 0.517 3.483 11 O -0.541 6.541 12 N -0.709 5.709 13 C 0.142 3.858 14 H 0.082 0.918 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.173 3.827 20 H 0.050 0.950 21 N -0.722 5.722 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.402 0.598 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.385 0.615 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -6.445 -16.258 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.066 4.066 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.055 4.055 9 C -0.150 4.150 10 C 0.303 3.697 11 O -0.418 6.418 12 N -0.359 5.359 13 C 0.037 3.963 14 H 0.100 0.900 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.174 4.174 19 C 0.063 3.937 20 H 0.068 0.932 21 N -0.362 5.362 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.237 0.763 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.859 -6.451 -16.532 18.399 hybrid contribution -0.510 0.598 1.195 1.430 sum -5.369 -5.853 -15.336 17.271 Atomic orbital electron populations 1.21779 0.94834 1.01672 1.02178 1.20543 0.95822 0.93019 1.03014 1.19637 0.98703 0.95630 0.92645 1.20918 1.00638 0.95224 0.97173 1.21058 1.00216 0.94869 0.97890 1.21061 1.00751 0.99934 0.92543 1.21067 0.98044 0.94596 0.98345 1.19144 0.99323 0.93913 0.93128 1.20774 0.97825 1.00413 0.95956 1.20320 0.89187 0.79197 0.80991 1.90690 1.30730 1.63334 1.57083 1.45909 1.17123 1.49537 1.23309 1.21261 0.89740 0.90689 0.94651 0.89954 1.21864 0.98569 0.95668 1.00108 1.21469 0.98390 0.99231 0.96098 1.21577 1.01093 0.98134 0.94915 1.22212 1.00357 0.94247 1.00602 1.20450 0.96248 0.88483 0.88538 0.93238 1.42425 1.69287 1.04610 1.19911 1.19252 1.29384 0.94116 0.94326 0.91175 1.24730 1.01462 0.95881 0.98630 1.69686 1.49516 1.00092 1.38432 0.86172 0.78548 0.77510 0.84261 1.20597 1.21929 1.21944 0.92388 0.92590 0.92404 0.90929 0.91225 0.86484 0.86470 0.86274 0.85943 0.87799 0.88174 0.76345 0.92122 0.92025 0.92456 0.92020 0.92416 0.92725 0.91646 0.92496 0.78143 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.72 37.16 0.36 -0.95 16 2 C -0.09 -0.95 5.38 -27.88 -0.15 -1.10 16 3 C -0.07 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.44 9.68 -39.59 -0.38 -1.83 16 5 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 7 C -0.10 -1.43 9.68 -39.58 -0.38 -1.82 16 8 C -0.05 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.11 -1.46 5.16 -29.03 -0.15 -1.61 16 10 C 0.52 8.49 6.99 -10.99 -0.08 8.41 16 11 O -0.54 -10.72 15.70 5.56 0.09 -10.63 16 12 N -0.71 -11.31 4.91 -53.81 -0.26 -11.57 16 13 C 0.14 2.39 1.98 -67.93 -0.13 2.26 16 14 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 15 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 16 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 18 C -0.13 -2.31 5.50 -26.75 -0.15 -2.45 16 19 C 0.17 3.23 2.29 -67.95 -0.16 3.07 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.07 4.95 -53.44 -0.26 -17.33 16 22 C -0.24 -6.29 9.93 -15.05 -0.15 -6.44 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 26 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H 0.06 0.51 6.77 -51.93 -0.35 0.16 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 40 H 0.10 1.08 5.60 -51.93 -0.29 0.79 16 41 H 0.40 6.01 8.60 -40.82 -0.35 5.66 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 51 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -31.16 404.99 -11.12 -42.27 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -8.76 Total: 15.62 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.72 Total: -14.53 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.20 Total: -55.56 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.16 -11.12 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085241355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.274 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds