Wall clock time and date at job start Tue Mar 31 2020 16:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38247 * 120.00188 * 265.00509 * 3 2 1 5 5 C 1.38219 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99865 * 0.02562 * 6 5 4 8 8 C 1.38219 * 119.99736 * 84.73007 * 3 2 1 9 9 C 1.50709 * 119.99984 * 359.97438 * 8 3 2 10 10 C 1.50700 * 109.47266 * 84.99868 * 9 8 3 11 11 O 1.21282 * 119.99466 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99655 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47446 * 34.99919 * 13 12 10 15 15 C 1.53007 * 109.46998 * 274.99585 * 13 12 10 16 16 C 1.52995 * 109.47239 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47036 * 60.00015 * 16 15 13 18 18 C 1.53001 * 109.47400 * 300.00053 * 17 16 15 19 19 C 1.53000 * 109.46975 * 155.00429 * 13 12 10 20 20 H 1.08997 * 109.47450 * 59.99492 * 19 13 12 21 21 N 1.46506 * 109.46637 * 299.99302 * 19 13 12 22 22 C 1.36940 * 119.99581 * 155.00314 * 21 19 13 23 23 H 1.08001 * 120.00419 * 359.97438 * 22 21 19 24 24 C 1.38820 * 119.99748 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99562 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99961 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47198 * 119.99515 * 26 24 22 29 29 H 1.48493 * 109.47074 * 239.99755 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 34 34 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 35 35 H 1.07997 * 120.00191 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99890 * 180.02562 * 5 4 3 37 37 H 1.07996 * 119.99841 * 180.02562 * 6 5 4 38 38 H 1.08003 * 120.00137 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47084 * 205.00027 * 9 8 3 40 40 H 1.09002 * 109.46635 * 324.99889 * 9 8 3 41 41 H 0.97001 * 119.99900 * 0.02562 * 12 10 9 42 42 H 1.08997 * 109.47295 * 300.00427 * 15 13 12 43 43 H 1.09005 * 109.46758 * 60.00298 * 15 13 12 44 44 H 1.08997 * 109.47199 * 180.02562 * 16 15 13 45 45 H 1.09006 * 109.47484 * 300.00304 * 16 15 13 46 46 H 1.08997 * 109.46864 * 60.00110 * 17 16 15 47 47 H 1.09003 * 109.47395 * 179.97438 * 17 16 15 48 48 H 1.09000 * 109.47492 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.47159 * 299.99876 * 18 17 16 50 50 H 0.96995 * 120.00297 * 335.00756 * 21 19 13 51 51 H 0.97000 * 119.99083 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1927 5 6 2.8213 3.3411 -1.1926 6 6 2.9525 4.0279 0.0001 7 6 2.6238 3.4111 1.1924 8 6 2.1591 2.1090 1.1920 9 6 1.7943 1.4386 2.4915 10 6 2.9709 0.6418 2.9934 11 8 4.0038 0.6200 2.3580 12 7 2.8750 -0.0474 4.1476 13 6 4.0190 -0.8215 4.6357 14 1 4.9434 -0.3020 4.3836 15 6 4.0159 -2.2042 3.9806 16 6 5.2103 -3.0129 4.4907 17 6 5.1098 -3.1680 6.0095 18 6 5.1128 -1.7853 6.6647 19 6 3.9190 -0.9767 6.1545 20 1 2.9945 -1.4962 6.4066 21 7 3.9219 0.3473 6.7819 22 6 3.3481 0.5229 8.0128 23 1 2.8930 -0.3145 8.5209 24 6 3.3504 1.7775 8.6070 25 7 3.9045 2.7980 7.9874 26 14 2.5670 2.0172 10.2857 27 1 2.0173 0.7235 10.7647 28 1 3.5905 2.5059 11.2443 29 1 1.4702 3.0128 10.1825 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.2583 1.5015 -2.1244 36 1 3.0778 3.8233 -2.1244 37 1 3.3117 5.0464 0.0000 38 1 2.7259 3.9477 2.1242 39 1 1.5274 2.1960 3.2286 40 1 0.9463 0.7727 2.3313 41 1 2.0485 -0.0308 4.6551 42 1 3.0915 -2.7237 4.2327 43 1 4.0871 -2.0936 2.8985 44 1 5.2084 -3.9977 4.0237 45 1 6.1350 -2.4935 4.2390 46 1 4.1852 -3.6873 6.2613 47 1 5.9604 -3.7445 6.3730 48 1 5.0408 -1.8958 7.7467 49 1 6.0375 -1.2660 6.4130 50 1 4.3302 1.0994 6.3253 51 1 3.9064 3.6745 8.4029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085241355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:40 Heat of formation + Delta-G solvation = -49.064319 kcal Electronic energy + Delta-G solvation = -29049.926789 eV Core-core repulsion = 25333.060524 eV Total energy + Delta-G solvation = -3716.866265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37287 -40.27334 -38.96742 -35.81473 -35.18896 -35.03386 -33.49891 -32.98713 -30.81298 -30.31797 -29.51430 -28.10323 -25.63070 -24.73053 -23.75305 -22.82828 -22.46134 -21.62757 -21.21147 -20.61790 -19.15961 -18.01513 -17.55733 -17.12176 -17.00375 -16.61264 -15.94270 -15.73620 -15.67096 -15.31572 -15.06248 -14.73064 -14.63557 -14.58378 -14.33667 -14.15646 -13.92976 -13.85476 -13.64229 -13.47566 -13.01014 -12.91625 -12.86341 -12.79201 -12.63411 -12.20458 -12.17283 -12.13318 -12.00815 -12.00633 -11.67622 -11.64023 -11.54364 -11.43471 -11.11601 -10.99987 -10.72942 -9.89166 -9.68189 -9.45996 -8.99050 -7.91251 -5.20034 0.44559 0.52221 1.48010 1.49161 1.58335 1.73185 2.32571 2.57077 2.92710 3.42605 3.68218 3.71061 3.82364 3.87562 3.99586 4.05840 4.11317 4.19100 4.27467 4.30562 4.33251 4.35283 4.44628 4.50673 4.53996 4.54640 4.59990 4.65088 4.70859 4.74396 4.76916 4.95619 5.02205 5.04662 5.09886 5.16546 5.20529 5.24339 5.24882 5.29869 5.31509 5.42264 5.47487 5.53814 5.58832 5.60963 5.63506 5.71777 5.77404 6.16143 6.28788 6.67411 7.35431 7.35901 8.09372 8.33622 9.32128 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003626 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.141625 B = 7719.788374 C = 9385.426245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.077 4.077 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.136 4.136 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.102 4.102 10 C 0.516 3.484 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.150 3.850 14 H 0.047 0.953 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.129 4.129 19 C 0.173 3.827 20 H 0.060 0.940 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.080 0.920 24 C -0.073 4.073 25 N -0.970 5.970 26 Si 0.967 3.033 27 H -0.263 1.263 28 H -0.301 1.301 29 H -0.296 1.296 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.408 0.592 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.037 0.963 50 H 0.368 0.632 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -8.742 -17.301 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.076 4.076 9 C -0.141 4.141 10 C 0.303 3.697 11 O -0.458 6.458 12 N -0.356 5.356 13 C 0.044 3.956 14 H 0.065 0.935 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.064 3.936 20 H 0.077 0.923 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.098 0.902 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.188 1.188 28 H -0.229 1.229 29 H -0.223 1.223 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.243 0.757 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.199 0.801 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.276 -8.815 -17.567 20.632 hybrid contribution -0.028 1.279 1.458 1.940 sum -6.304 -7.536 -16.110 18.869 Atomic orbital electron populations 1.21751 0.93164 1.02685 1.02372 1.20556 0.97203 0.91702 1.02720 1.19948 0.98560 0.96566 0.92614 1.21290 0.99895 0.95545 0.97837 1.21429 0.99181 0.94910 0.98593 1.21332 1.00673 1.00880 0.92474 1.21218 0.99396 0.95236 0.98818 1.19288 1.00365 0.94145 0.93763 1.20753 0.97145 1.00330 0.95861 1.20835 0.89514 0.78753 0.80552 1.90663 1.32377 1.64614 1.58191 1.45915 1.17006 1.49418 1.23257 1.21103 0.88649 0.92219 0.93615 0.93486 1.21788 1.00150 0.93840 0.99407 1.21477 0.97230 1.00399 0.95783 1.21509 1.02750 0.95587 0.94857 1.22090 0.98577 0.96394 0.99901 1.20658 0.97155 0.86376 0.89392 0.92252 1.42598 1.68945 1.06073 1.19441 1.19626 1.27593 0.94045 0.94818 0.90241 1.25471 1.03045 0.95923 1.02114 1.69852 1.51946 1.00282 1.40065 0.85159 0.77187 0.77771 0.80163 1.18754 1.22872 1.22334 0.92638 0.91962 0.90951 0.92443 0.90250 0.84043 0.83691 0.84701 0.86902 0.87828 0.85600 0.75662 0.90128 0.92560 0.89443 0.93159 0.90810 0.90961 0.93166 0.94364 0.80111 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.72 71.98 0.70 -1.53 16 2 C -0.08 -1.73 5.38 29.85 0.16 -1.57 16 3 C -0.08 -1.92 5.13 -19.87 -0.10 -2.02 16 4 C -0.13 -2.83 9.68 22.27 0.22 -2.62 16 5 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 6 C -0.14 -3.37 10.05 22.27 0.22 -3.14 16 7 C -0.13 -3.73 9.68 22.27 0.22 -3.52 16 8 C -0.08 -2.13 4.37 -19.86 -0.09 -2.21 16 9 C -0.10 -2.73 5.16 29.10 0.15 -2.58 16 10 C 0.52 17.36 6.99 87.66 0.61 17.97 16 11 O -0.58 -23.75 15.70 -3.04 -0.05 -23.80 16 12 N -0.71 -22.76 4.91 -442.53 -2.17 -24.93 16 13 C 0.15 5.08 1.98 44.99 0.09 5.17 16 14 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 15 C -0.11 -3.00 5.49 30.59 0.17 -2.84 16 16 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 17 C -0.11 -2.70 5.92 30.60 0.18 -2.52 16 18 C -0.13 -4.40 5.50 30.58 0.17 -4.23 16 19 C 0.17 6.40 2.29 44.97 0.10 6.51 16 20 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 21 N -0.73 -35.30 4.95 -322.99 -1.60 -36.90 16 22 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 25 N -0.97 -58.96 13.06 21.65 0.28 -58.67 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 30 H 0.05 0.89 6.77 -2.39 -0.02 0.87 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 34 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.11 3.33 8.06 -2.91 -0.02 3.30 16 39 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 40 H 0.13 2.64 5.60 -2.39 -0.01 2.63 16 41 H 0.41 12.12 8.60 -92.71 -0.80 11.32 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 51 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -69.16 404.99 2.39 -66.77 By element: Atomic # 1 Polarization: 49.86 SS G_CDS: -0.60 Total: 49.26 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 4.50 Total: -18.90 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.49 Total: -120.51 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.16 2.39 -66.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085241355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds