Wall clock time and date at job start Tue Mar 31 2020 16:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38258 * 119.99741 * 90.00336 * 3 2 1 5 5 C 1.38214 * 119.99771 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00130 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00205 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46983 * 89.99772 * 8 7 6 10 10 O 1.21277 * 119.99928 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00008 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00212 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46786 * 35.00834 * 12 11 9 14 14 C 1.52994 * 109.47667 * 275.00461 * 12 11 9 15 15 C 1.52993 * 109.47627 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47133 * 60.00084 * 15 14 12 17 17 C 1.53002 * 109.46641 * 300.00282 * 16 15 14 18 18 C 1.52996 * 109.47375 * 59.99688 * 17 16 15 19 19 H 1.09007 * 109.46667 * 60.00002 * 18 17 16 20 20 N 1.46498 * 109.46912 * 179.97438 * 18 17 16 21 21 C 1.36936 * 120.00287 * 274.99990 * 20 18 17 22 22 H 1.07998 * 119.99836 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00045 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99948 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00202 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47274 * 90.00100 * 25 23 21 27 27 H 1.48498 * 109.47177 * 210.00184 * 25 23 21 28 28 H 1.48501 * 109.46860 * 330.00039 * 25 23 21 29 29 C 1.38209 * 119.99935 * 269.72536 * 3 2 1 30 30 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 31 31 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 32 32 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00249 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.00085 * 180.02562 * 5 4 3 37 37 H 1.08001 * 119.99781 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46931 * 209.99427 * 8 7 6 39 39 H 1.09002 * 109.46719 * 330.00013 * 8 7 6 40 40 H 0.97002 * 119.99647 * 0.02562 * 11 9 8 41 41 H 1.09004 * 109.47323 * 300.00044 * 14 12 11 42 42 H 1.09008 * 109.46917 * 59.99616 * 14 12 11 43 43 H 1.09000 * 109.47546 * 179.97438 * 15 14 12 44 44 H 1.08996 * 109.47262 * 300.00244 * 15 14 12 45 45 H 1.08996 * 109.46916 * 59.99948 * 16 15 14 46 46 H 1.08994 * 109.47380 * 180.02562 * 16 15 14 47 47 H 1.08998 * 109.46702 * 179.97438 * 17 16 15 48 48 H 1.08996 * 109.47193 * 299.99497 * 17 16 15 49 49 H 0.97005 * 119.99848 * 95.00555 * 20 18 17 50 50 H 0.96998 * 119.99921 * 179.97438 * 24 23 21 51 51 H 1.07997 * 120.00050 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0726 1.1974 5 6 2.7240 3.3755 1.1974 6 6 2.9553 4.0270 0.0000 7 6 2.7249 3.3755 -1.1970 8 6 2.9765 4.0857 -2.5021 9 6 4.3999 3.8484 -2.9368 10 8 5.1371 3.1690 -2.2544 11 7 4.8531 4.3903 -4.0845 12 6 6.2369 4.1601 -4.5069 13 1 6.5421 3.1542 -4.2186 14 6 7.1528 5.1838 -3.8334 15 6 8.5980 4.9430 -4.2740 16 6 8.6991 5.0902 -5.7936 17 6 7.7831 4.0663 -6.4672 18 6 6.3380 4.3071 -6.0264 19 1 6.0329 5.3130 -6.3152 20 7 5.4609 3.3271 -6.6719 21 6 4.9781 3.5649 -7.9310 22 1 5.2442 4.4747 -8.4485 23 6 4.1466 2.6365 -8.5423 24 7 3.8219 1.5279 -7.9114 25 14 3.4886 2.9605 -10.2603 26 1 4.4320 2.4066 -11.2644 27 1 2.1632 2.3085 -10.4138 28 1 3.3473 4.4241 -10.4683 29 6 2.2681 2.0705 -1.1969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0825 1.5636 2.1327 36 1 2.9044 3.8845 2.1327 37 1 3.3153 5.0452 0.0001 38 1 2.2958 3.7017 -3.2618 39 1 2.8099 5.1550 -2.3718 40 1 4.2633 4.9333 -4.6306 41 1 6.8475 6.1897 -4.1218 42 1 7.0811 5.0787 -2.7508 43 1 9.2505 5.6727 -3.7945 44 1 8.9031 3.9372 -3.9853 45 1 8.3941 6.0960 -6.0823 46 1 9.7286 4.9182 -6.1076 47 1 7.8548 4.1715 -7.5497 48 1 8.0882 3.0605 -6.1785 49 1 5.2221 2.5098 -6.2072 50 1 3.2406 0.8793 -8.3385 51 1 2.0919 1.5600 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085248606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:44 Heat of formation + Delta-G solvation = -34.621306 kcal Electronic energy + Delta-G solvation = -28455.063669 eV Core-core repulsion = 24738.823700 eV Total energy + Delta-G solvation = -3716.239969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.00872 -39.13026 -37.69470 -34.42078 -34.04202 -33.64250 -32.34274 -31.14842 -29.66924 -29.32082 -28.00351 -26.89199 -23.95251 -23.73284 -22.58070 -21.78846 -21.07144 -20.51742 -19.91580 -19.26296 -17.26448 -16.63588 -16.44491 -15.93469 -15.74060 -15.07959 -14.79139 -14.63693 -14.09334 -13.96623 -13.75748 -13.64833 -13.56145 -13.38031 -13.13712 -12.96705 -12.80302 -12.61912 -12.29194 -12.08534 -12.03880 -11.74371 -11.71637 -11.26996 -11.09049 -10.92808 -10.83748 -10.82291 -10.75170 -10.74010 -10.54863 -10.32168 -10.17996 -9.75489 -9.64234 -9.47357 -8.93704 -8.67903 -8.53393 -8.50183 -7.00058 -5.79916 -3.09509 1.41503 1.49467 3.05016 3.39773 3.45267 3.46960 3.53705 3.95641 4.53927 4.69874 4.72842 4.87990 5.07316 5.10881 5.11871 5.16927 5.20835 5.28880 5.32069 5.38741 5.45564 5.51918 5.55211 5.55665 5.64755 5.65466 5.72941 5.83429 5.83653 5.86117 5.90608 5.96968 5.99056 6.06673 6.12358 6.16215 6.19076 6.33909 6.46273 6.49585 6.51780 6.53455 6.59188 6.65116 6.71838 6.87092 6.93487 7.09238 7.11288 7.65670 7.98537 8.37402 8.66981 9.49173 10.05928 10.41287 11.42048 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009564 B = 0.003440 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.935807 B = 8137.572616 C =10408.805756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.054 4.054 8 C -0.106 4.106 9 C 0.517 3.483 10 O -0.542 6.542 11 N -0.709 5.709 12 C 0.142 3.858 13 H 0.082 0.918 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.100 4.100 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.402 0.598 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 5.691 16.065 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.130 4.130 7 C -0.054 4.054 8 C -0.146 4.146 9 C 0.302 3.698 10 O -0.420 6.420 11 N -0.359 5.359 12 C 0.036 3.964 13 H 0.100 0.900 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.118 4.118 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.237 0.763 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.114 5.252 16.370 17.228 hybrid contribution -0.644 0.093 -1.235 1.396 sum -1.758 5.345 15.135 16.147 Atomic orbital electron populations 1.21741 0.94830 1.01581 1.02126 1.20546 0.96064 0.92808 1.02918 1.19826 0.99187 0.96105 0.93075 1.20938 1.00871 0.95028 0.97253 1.21012 1.00059 0.95019 0.97677 1.20921 1.00131 0.99920 0.92023 1.19283 0.98201 0.94288 0.93651 1.20707 0.95559 1.02093 0.96259 1.20349 0.88966 0.79389 0.81071 1.90688 1.58326 1.38823 1.54138 1.45904 1.13742 1.53041 1.23172 1.21259 0.80380 0.99471 0.95250 0.89951 1.21863 0.94991 0.99151 1.00220 1.21472 0.95905 1.01571 0.96250 1.21580 0.99403 0.99855 0.94897 1.22222 0.96356 0.98289 1.00572 1.20458 0.90414 0.94315 0.88537 0.93233 1.42415 1.55636 1.21479 1.16683 1.19205 1.22846 1.03050 0.92048 0.91235 1.24725 1.00706 0.96816 0.98413 1.69674 1.40367 1.10113 1.37597 0.86241 0.78174 0.77322 0.84724 1.21787 1.21850 1.20802 1.20926 0.99098 0.93968 0.97794 0.92760 0.92428 0.92509 0.90829 0.91227 0.86557 0.86390 0.86514 0.87686 0.88335 0.76319 0.92120 0.92022 0.92449 0.92006 0.92405 0.92716 0.91643 0.92490 0.78144 0.93524 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.97 16 2 C -0.09 -0.91 6.07 -27.88 -0.17 -1.08 16 3 C -0.08 -1.04 5.13 -104.62 -0.54 -1.57 16 4 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 5 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 6 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 7 C -0.05 -0.75 4.37 -104.62 -0.46 -1.20 16 8 C -0.11 -1.39 5.83 -29.03 -0.17 -1.56 16 9 C 0.52 8.54 7.79 -10.99 -0.09 8.45 16 10 O -0.54 -10.87 15.70 5.56 0.09 -10.78 16 11 N -0.71 -11.38 4.91 -53.81 -0.26 -11.65 16 12 C 0.14 2.41 1.98 -67.94 -0.13 2.27 16 13 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 14 C -0.12 -1.76 5.49 -26.74 -0.15 -1.91 16 15 C -0.11 -1.51 5.92 -26.73 -0.16 -1.66 16 16 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 17 C -0.13 -2.32 5.50 -26.73 -0.15 -2.47 16 18 C 0.17 3.24 2.29 -67.94 -0.16 3.09 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -17.09 4.95 -53.43 -0.26 -17.36 16 21 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 25 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 C -0.10 -1.41 9.36 -39.58 -0.37 -1.78 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 39 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.40 6.03 8.60 -40.82 -0.35 5.68 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 412.26 15.07 6.21 6.21 Total: -1.00 -31.22 412.26 -11.31 -42.53 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -9.05 Total: 15.40 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.73 Total: -14.46 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.20 Total: -55.63 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.22 -11.31 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085248606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.911 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds