Wall clock time and date at job start Tue Mar 31 2020 16:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38258 * 119.99741 * 90.00336 * 3 2 1 5 5 C 1.38214 * 119.99771 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00130 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00205 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46983 * 89.99772 * 8 7 6 10 10 O 1.21277 * 119.99928 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00008 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00212 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46786 * 35.00834 * 12 11 9 14 14 C 1.52994 * 109.47667 * 275.00461 * 12 11 9 15 15 C 1.52993 * 109.47627 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47133 * 60.00084 * 15 14 12 17 17 C 1.53002 * 109.46641 * 300.00282 * 16 15 14 18 18 C 1.52996 * 109.47375 * 59.99688 * 17 16 15 19 19 H 1.09007 * 109.46667 * 60.00002 * 18 17 16 20 20 N 1.46498 * 109.46912 * 179.97438 * 18 17 16 21 21 C 1.36936 * 120.00287 * 274.99990 * 20 18 17 22 22 H 1.07998 * 119.99836 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00045 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99948 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00202 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47274 * 90.00100 * 25 23 21 27 27 H 1.48498 * 109.47177 * 210.00184 * 25 23 21 28 28 H 1.48501 * 109.46860 * 330.00039 * 25 23 21 29 29 C 1.38209 * 119.99935 * 269.72536 * 3 2 1 30 30 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 31 31 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 32 32 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00249 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.00085 * 180.02562 * 5 4 3 37 37 H 1.08001 * 119.99781 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46931 * 209.99427 * 8 7 6 39 39 H 1.09002 * 109.46719 * 330.00013 * 8 7 6 40 40 H 0.97002 * 119.99647 * 0.02562 * 11 9 8 41 41 H 1.09004 * 109.47323 * 300.00044 * 14 12 11 42 42 H 1.09008 * 109.46917 * 59.99616 * 14 12 11 43 43 H 1.09000 * 109.47546 * 179.97438 * 15 14 12 44 44 H 1.08996 * 109.47262 * 300.00244 * 15 14 12 45 45 H 1.08996 * 109.46916 * 59.99948 * 16 15 14 46 46 H 1.08994 * 109.47380 * 180.02562 * 16 15 14 47 47 H 1.08998 * 109.46702 * 179.97438 * 17 16 15 48 48 H 1.08996 * 109.47193 * 299.99497 * 17 16 15 49 49 H 0.97005 * 119.99848 * 95.00555 * 20 18 17 50 50 H 0.96998 * 119.99921 * 179.97438 * 24 23 21 51 51 H 1.07997 * 120.00050 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0726 1.1974 5 6 2.7240 3.3755 1.1974 6 6 2.9553 4.0270 0.0000 7 6 2.7249 3.3755 -1.1970 8 6 2.9765 4.0857 -2.5021 9 6 4.3999 3.8484 -2.9368 10 8 5.1371 3.1690 -2.2544 11 7 4.8531 4.3903 -4.0845 12 6 6.2369 4.1601 -4.5069 13 1 6.5421 3.1542 -4.2186 14 6 7.1528 5.1838 -3.8334 15 6 8.5980 4.9430 -4.2740 16 6 8.6991 5.0902 -5.7936 17 6 7.7831 4.0663 -6.4672 18 6 6.3380 4.3071 -6.0264 19 1 6.0329 5.3130 -6.3152 20 7 5.4609 3.3271 -6.6719 21 6 4.9781 3.5649 -7.9310 22 1 5.2442 4.4747 -8.4485 23 6 4.1466 2.6365 -8.5423 24 7 3.8219 1.5279 -7.9114 25 14 3.4886 2.9605 -10.2603 26 1 4.4320 2.4066 -11.2644 27 1 2.1632 2.3085 -10.4138 28 1 3.3473 4.4241 -10.4683 29 6 2.2681 2.0705 -1.1969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0825 1.5636 2.1327 36 1 2.9044 3.8845 2.1327 37 1 3.3153 5.0452 0.0001 38 1 2.2958 3.7017 -3.2618 39 1 2.8099 5.1550 -2.3718 40 1 4.2633 4.9333 -4.6306 41 1 6.8475 6.1897 -4.1218 42 1 7.0811 5.0787 -2.7508 43 1 9.2505 5.6727 -3.7945 44 1 8.9031 3.9372 -3.9853 45 1 8.3941 6.0960 -6.0823 46 1 9.7286 4.9182 -6.1076 47 1 7.8548 4.1715 -7.5497 48 1 8.0882 3.0605 -6.1785 49 1 5.2221 2.5098 -6.2072 50 1 3.2406 0.8793 -8.3385 51 1 2.0919 1.5600 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085248606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:43 Heat of formation + Delta-G solvation = -51.499375 kcal Electronic energy + Delta-G solvation = -28455.795557 eV Core-core repulsion = 24738.823700 eV Total energy + Delta-G solvation = -3716.971857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24477 -40.24227 -39.04126 -35.81791 -35.33167 -35.03517 -33.33700 -32.98631 -30.82986 -30.34221 -29.51478 -28.08763 -25.62827 -24.80616 -23.78312 -22.87004 -22.48045 -21.64864 -21.16096 -20.53660 -19.15329 -17.99596 -17.54035 -17.19849 -16.77806 -16.63816 -15.93207 -15.85200 -15.62886 -15.36370 -15.06439 -14.67470 -14.66572 -14.58382 -14.51510 -14.15341 -13.96301 -13.77363 -13.65655 -13.50165 -12.97527 -12.92704 -12.84940 -12.77508 -12.59919 -12.24491 -12.16406 -12.15484 -12.03046 -12.00144 -11.71208 -11.63834 -11.63105 -11.43956 -11.11965 -10.99667 -10.72914 -9.89591 -9.67154 -9.47961 -8.99198 -7.91105 -5.20051 0.44365 0.52180 1.48406 1.49471 1.57496 1.73419 2.32492 2.57110 2.92747 3.42467 3.68265 3.71091 3.80599 3.84171 3.99285 4.05056 4.18251 4.23308 4.26769 4.28073 4.33016 4.38882 4.44461 4.48671 4.52659 4.58226 4.59973 4.61135 4.69874 4.70386 4.78356 4.95197 5.01160 5.02106 5.06962 5.17647 5.21095 5.23097 5.24025 5.29496 5.31156 5.36272 5.47028 5.53409 5.58029 5.58754 5.68552 5.71345 5.75118 6.16020 6.28659 6.67543 7.35338 7.35913 8.09251 8.33610 9.32021 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009564 B = 0.003440 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.935807 B = 8137.572616 C =10408.805756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.071 4.071 8 C -0.099 4.099 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.706 5.706 12 C 0.149 3.851 13 H 0.047 0.953 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.173 3.827 19 H 0.060 0.940 20 N -0.732 5.732 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.073 4.073 24 N -0.970 5.970 25 Si 0.967 3.033 26 H -0.293 1.293 27 H -0.300 1.300 28 H -0.265 1.265 29 C -0.128 4.128 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.409 0.591 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.038 0.962 49 H 0.368 0.632 50 H 0.248 0.752 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 8.142 17.207 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.072 4.072 8 C -0.138 4.138 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.356 5.356 12 C 0.044 3.956 13 H 0.065 0.935 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.170 4.170 18 C 0.064 3.936 19 H 0.077 0.923 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.097 0.903 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.221 1.221 27 H -0.227 1.227 28 H -0.190 1.190 29 C -0.146 4.146 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.123 0.877 39 H 0.150 0.850 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.199 0.801 50 H 0.056 0.944 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.688 7.769 17.502 19.161 hybrid contribution -0.709 -0.669 -1.536 1.820 sum -1.398 7.100 15.966 17.529 Atomic orbital electron populations 1.21707 0.93701 1.02423 1.01980 1.20589 0.97034 0.91761 1.03011 1.20107 0.98977 0.97026 0.93045 1.21284 1.00142 0.95299 0.97765 1.21411 0.98848 0.95078 0.98504 1.21203 1.00107 1.00845 0.91942 1.19442 0.98887 0.94396 0.94445 1.20709 0.92863 1.04138 0.96088 1.20933 0.90018 0.78372 0.80566 1.90661 1.59688 1.40480 1.55348 1.45912 1.13609 1.52888 1.23164 1.21102 0.81628 0.98742 0.94175 0.93498 1.21788 0.95040 0.98927 0.99456 1.21481 0.95515 1.01930 0.95988 1.21513 0.99327 0.99106 0.94769 1.22103 0.96194 0.98776 0.99935 1.20663 0.90310 0.93268 0.89337 0.92252 1.42586 1.56483 1.21764 1.16205 1.19587 1.21277 1.02698 0.92694 0.90267 1.25471 1.02023 0.96986 1.02017 1.69844 1.41793 1.11300 1.39179 0.85225 0.76782 0.77829 0.80430 1.22100 1.22741 1.19004 1.21017 1.00910 0.94712 0.97986 0.91860 0.93574 0.91171 0.92144 0.89685 0.84015 0.83545 0.84834 0.87724 0.85032 0.75581 0.90121 0.92594 0.89440 0.93140 0.90794 0.90943 0.93150 0.94358 0.80116 0.94355 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.80 16 2 C -0.09 -1.83 6.07 29.85 0.18 -1.65 16 3 C -0.09 -2.33 5.13 -19.86 -0.10 -2.43 16 4 C -0.13 -2.78 9.70 22.27 0.22 -2.57 16 5 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 6 C -0.12 -2.98 9.70 22.27 0.22 -2.77 16 7 C -0.07 -2.00 4.37 -19.86 -0.09 -2.08 16 8 C -0.10 -2.58 5.83 29.10 0.17 -2.41 16 9 C 0.51 17.29 7.79 87.66 0.68 17.97 16 10 O -0.58 -24.08 15.70 -3.02 -0.05 -24.13 16 11 N -0.71 -22.79 4.91 -442.56 -2.17 -24.96 16 12 C 0.15 5.09 1.98 44.99 0.09 5.18 16 13 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 14 C -0.11 -3.04 5.49 30.59 0.17 -2.87 16 15 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 16 C -0.11 -2.72 5.92 30.60 0.18 -2.54 16 17 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 18 C 0.17 6.43 2.29 44.99 0.10 6.54 16 19 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 20 N -0.73 -35.38 4.95 -322.95 -1.60 -36.98 16 21 C -0.23 -12.18 9.93 84.03 0.83 -11.34 16 22 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.97 -58.96 13.06 21.65 0.28 -58.68 16 25 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 C -0.13 -3.80 9.36 22.27 0.21 -3.59 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.40 8.08 -2.39 -0.02 1.39 16 34 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 38 H 0.10 2.73 8.09 -2.39 -0.02 2.71 16 39 H 0.13 2.50 8.09 -2.39 -0.02 2.48 16 40 H 0.41 12.09 8.60 -92.71 -0.80 11.29 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.37 20.17 7.80 -92.70 -0.72 19.44 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.10 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.62 412.26 2.49 -67.13 By element: Atomic # 1 Polarization: 50.13 SS G_CDS: -0.62 Total: 49.52 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.61 Total: -19.08 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -3.49 Total: -120.62 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.62 2.49 -67.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085248606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.629 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds