Wall clock time and date at job start Tue Mar 31 2020 16:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46967 * 2 1 4 4 C 1.38238 * 120.00018 * 90.00029 * 3 2 1 5 5 C 1.38238 * 120.00304 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99480 * 359.97246 * 5 4 3 7 7 C 1.50699 * 119.99753 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47042 * 90.00128 * 7 6 5 9 9 O 1.21273 * 119.99921 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99935 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00072 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47021 * 34.99856 * 11 10 8 13 13 C 1.52999 * 109.47487 * 275.00191 * 11 10 8 14 14 C 1.52997 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 11 16 16 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 19 19 N 1.46500 * 109.47007 * 180.02562 * 17 16 15 20 20 C 1.36933 * 119.99983 * 275.00168 * 19 17 16 21 21 H 1.07997 * 120.00042 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00189 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00238 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99935 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47140 * 90.00417 * 24 22 20 26 26 H 1.48501 * 109.47304 * 210.00716 * 24 22 20 27 27 H 1.48505 * 109.47154 * 330.00556 * 24 22 20 28 28 C 1.38235 * 120.00534 * 0.27900 * 6 5 4 29 29 C 1.38234 * 120.00247 * 270.02248 * 3 2 1 30 30 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47225 * 299.99780 * 1 2 3 32 32 H 1.08995 * 109.46918 * 60.00342 * 1 2 3 33 33 H 1.08997 * 109.47225 * 240.00220 * 2 1 3 34 34 H 1.08995 * 109.46918 * 119.99657 * 2 1 3 35 35 H 1.07999 * 120.00159 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00179 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47190 * 330.00248 * 7 6 5 38 38 H 1.09005 * 109.47361 * 210.00282 * 7 6 5 39 39 H 0.97007 * 120.00235 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.46929 * 59.99046 * 13 11 10 41 41 H 1.09002 * 109.46716 * 299.99851 * 13 11 10 42 42 H 1.09002 * 109.47153 * 299.99641 * 14 13 11 43 43 H 1.09001 * 109.46832 * 179.97438 * 14 13 11 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 46 46 H 1.08993 * 109.47662 * 180.02562 * 16 15 14 47 47 H 1.09002 * 109.47075 * 300.00932 * 16 15 14 48 48 H 0.97002 * 120.00110 * 95.00836 * 19 17 16 49 49 H 0.97001 * 119.99778 * 179.97438 * 23 22 20 50 50 H 1.07994 * 120.00217 * 179.72482 * 28 6 5 51 51 H 1.08002 * 120.00222 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3757 1.1972 6 6 2.9554 4.0269 0.0001 7 6 3.4588 5.4473 0.0001 8 6 4.9658 5.4462 0.0007 9 8 5.5714 4.3954 0.0007 10 7 5.6406 6.6129 0.0014 11 6 7.1055 6.6118 0.0026 12 1 7.4687 5.7697 -0.5866 13 6 7.6143 6.4855 1.4399 14 6 9.1443 6.4838 1.4411 15 6 9.6563 7.7905 0.8318 16 6 9.1476 7.9167 -0.6057 17 6 7.6176 7.9185 -0.6068 18 1 7.2548 8.7608 -0.0177 19 7 7.1305 8.0387 -1.9832 20 6 7.0016 9.2747 -2.5584 21 1 7.2587 10.1609 -1.9972 22 6 6.5395 9.3887 -3.8623 23 7 6.4152 10.5768 -4.4150 24 14 6.0942 7.8560 -4.8328 25 1 4.6610 7.5324 -4.6168 26 1 6.3347 8.0979 -6.2781 27 1 6.9328 6.7191 -4.3749 28 6 2.7201 3.3771 -1.1971 29 6 2.2623 2.0727 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9036 3.8849 2.1325 37 1 3.0955 5.9615 0.8898 38 1 3.0962 5.9613 -0.8901 39 1 5.1562 7.4534 0.0010 40 1 7.2499 5.5545 1.8739 41 1 7.2512 7.3276 2.0291 42 1 9.5071 5.6415 0.8520 43 1 9.5067 6.3943 2.4652 44 1 9.2935 8.6327 1.4208 45 1 10.7463 7.7890 0.8322 46 1 9.5126 8.8474 -1.0400 47 1 9.5103 7.0744 -1.1947 48 1 6.8991 7.2428 -2.4871 49 1 6.0926 10.6564 -5.3264 50 1 2.8966 3.8874 -2.1323 51 1 2.0824 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085346492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:47 Heat of formation + Delta-G solvation = -30.943478 kcal Electronic energy + Delta-G solvation = -28382.956307 eV Core-core repulsion = 24666.875820 eV Total energy + Delta-G solvation = -3716.080487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13615 -39.26109 -37.84820 -34.73202 -34.18668 -33.78008 -31.50158 -31.34692 -30.94391 -29.46383 -28.30955 -26.93307 -23.63324 -23.45957 -22.77250 -22.16362 -20.99859 -20.72176 -20.11439 -19.49993 -17.79824 -16.71822 -16.45297 -15.90673 -15.83466 -15.17897 -14.93107 -14.72648 -14.32481 -13.98569 -13.90384 -13.78938 -13.53864 -13.48281 -13.34760 -13.17061 -12.94088 -12.66329 -12.42333 -12.36520 -12.06318 -11.91833 -11.80489 -11.38791 -11.35777 -11.03401 -10.95650 -10.92669 -10.89379 -10.87404 -10.61029 -10.37979 -10.14113 -9.82021 -9.63268 -9.58954 -8.97665 -8.91006 -8.67491 -8.52856 -7.32507 -5.82333 -3.18016 1.28639 1.41682 2.89129 3.33240 3.39399 3.39905 3.42912 3.84182 4.54722 4.55590 4.66918 4.74944 4.89975 4.92859 4.97257 5.00489 5.10390 5.13249 5.25830 5.28343 5.32934 5.42021 5.42943 5.45846 5.51680 5.56241 5.58696 5.64761 5.67233 5.75879 5.77519 5.86120 5.90528 5.90955 6.03043 6.04275 6.05870 6.23835 6.36896 6.37982 6.39369 6.41757 6.46297 6.56549 6.59912 6.78739 6.80817 6.98221 6.99584 7.83135 7.93227 8.36617 8.51271 9.14834 9.87741 10.07564 11.35733 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003252 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.047981 B = 8606.881601 C =10480.323534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.062 4.062 7 C -0.107 4.107 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.713 5.713 11 C 0.138 3.862 12 H 0.082 0.918 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.060 0.940 19 N -0.746 5.746 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.405 0.595 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -15.529 13.692 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.063 4.063 7 C -0.147 4.147 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.033 3.967 12 H 0.100 0.900 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.157 4.157 16 C -0.174 4.174 17 C 0.068 3.932 18 H 0.078 0.922 19 N -0.388 5.388 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.711 3.289 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.200 -16.015 13.614 22.219 hybrid contribution -0.439 -0.492 -0.963 1.167 sum -7.640 -16.507 12.652 22.156 Atomic orbital electron populations 1.21746 0.94841 1.01514 1.02223 1.20526 0.96050 0.92870 1.02717 1.19843 0.99577 0.96067 0.93274 1.20913 1.00610 0.94796 0.97337 1.20924 0.99011 0.94863 0.97283 1.19275 0.98708 0.94775 0.93501 1.20716 0.93109 0.95450 1.05411 1.20429 0.89449 0.83980 0.76176 1.90692 1.70270 1.31251 1.49617 1.45992 1.07423 1.08533 1.74369 1.21319 0.79100 1.00182 0.96110 0.90012 1.21851 0.95855 1.01824 0.96636 1.21483 0.94992 0.98392 1.00389 1.21575 0.99787 0.97156 0.97224 1.22184 0.97825 1.02466 0.94937 1.20443 0.92186 0.93835 0.86735 0.92247 1.42790 1.79589 1.05662 1.10807 1.19037 1.37068 0.84692 0.96448 0.89145 1.24641 1.01415 0.95887 0.96911 1.69696 1.52520 1.21109 1.14671 0.86612 0.78448 0.83792 0.80035 1.21148 1.21768 1.20387 1.21015 0.98491 0.94879 0.97596 1.20946 1.00337 0.94747 0.97440 0.92556 0.92590 0.92553 0.91156 0.91188 0.86383 0.86355 0.88081 0.87789 0.76067 0.91939 0.91877 0.92053 0.92300 0.92172 0.92534 0.91121 0.92606 0.80562 0.93045 0.86174 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 5 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 6 C -0.06 -0.81 4.37 -104.63 -0.46 -1.27 16 7 C -0.11 -1.30 5.83 -29.03 -0.17 -1.47 16 8 C 0.51 7.94 7.79 -10.98 -0.09 7.85 16 9 O -0.54 -10.24 15.70 5.56 0.09 -10.15 16 10 N -0.71 -10.69 4.91 -53.81 -0.26 -10.95 16 11 C 0.14 2.21 1.97 -67.93 -0.13 2.07 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 16 C -0.13 -2.23 5.50 -26.73 -0.15 -2.37 16 17 C 0.18 3.19 2.29 -67.93 -0.16 3.03 16 18 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 19 N -0.75 -16.65 4.76 -53.43 -0.25 -16.91 16 20 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -28.51 13.97 55.49 0.78 -27.73 16 24 Si 0.88 21.93 27.73 -169.99 -4.71 17.22 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 28 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 29 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 39 H 0.40 5.61 8.60 -40.82 -0.35 5.26 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.36 8.35 5.66 -40.82 -0.23 8.12 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 409.14 15.07 6.17 6.17 Total: -1.00 -32.26 409.14 -10.95 -43.21 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -9.01 Total: 12.83 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.74 Total: -13.68 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.26 Total: -55.59 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.26 -10.95 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085346492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds