Wall clock time and date at job start Tue Mar 31 2020 16:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46967 * 2 1 4 4 C 1.38238 * 120.00018 * 90.00029 * 3 2 1 5 5 C 1.38238 * 120.00304 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99480 * 359.97246 * 5 4 3 7 7 C 1.50699 * 119.99753 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47042 * 90.00128 * 7 6 5 9 9 O 1.21273 * 119.99921 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99935 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00072 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47021 * 34.99856 * 11 10 8 13 13 C 1.52999 * 109.47487 * 275.00191 * 11 10 8 14 14 C 1.52997 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 11 16 16 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 19 19 N 1.46500 * 109.47007 * 180.02562 * 17 16 15 20 20 C 1.36933 * 119.99983 * 275.00168 * 19 17 16 21 21 H 1.07997 * 120.00042 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00189 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00238 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99935 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47140 * 90.00417 * 24 22 20 26 26 H 1.48501 * 109.47304 * 210.00716 * 24 22 20 27 27 H 1.48505 * 109.47154 * 330.00556 * 24 22 20 28 28 C 1.38235 * 120.00534 * 0.27900 * 6 5 4 29 29 C 1.38234 * 120.00247 * 270.02248 * 3 2 1 30 30 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47225 * 299.99780 * 1 2 3 32 32 H 1.08995 * 109.46918 * 60.00342 * 1 2 3 33 33 H 1.08997 * 109.47225 * 240.00220 * 2 1 3 34 34 H 1.08995 * 109.46918 * 119.99657 * 2 1 3 35 35 H 1.07999 * 120.00159 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.00179 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47190 * 330.00248 * 7 6 5 38 38 H 1.09005 * 109.47361 * 210.00282 * 7 6 5 39 39 H 0.97007 * 120.00235 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.46929 * 59.99046 * 13 11 10 41 41 H 1.09002 * 109.46716 * 299.99851 * 13 11 10 42 42 H 1.09002 * 109.47153 * 299.99641 * 14 13 11 43 43 H 1.09001 * 109.46832 * 179.97438 * 14 13 11 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 46 46 H 1.08993 * 109.47662 * 180.02562 * 16 15 14 47 47 H 1.09002 * 109.47075 * 300.00932 * 16 15 14 48 48 H 0.97002 * 120.00110 * 95.00836 * 19 17 16 49 49 H 0.97001 * 119.99778 * 179.97438 * 23 22 20 50 50 H 1.07994 * 120.00217 * 179.72482 * 28 6 5 51 51 H 1.08002 * 120.00222 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3757 1.1972 6 6 2.9554 4.0269 0.0001 7 6 3.4588 5.4473 0.0001 8 6 4.9658 5.4462 0.0007 9 8 5.5714 4.3954 0.0007 10 7 5.6406 6.6129 0.0014 11 6 7.1055 6.6118 0.0026 12 1 7.4687 5.7697 -0.5866 13 6 7.6143 6.4855 1.4399 14 6 9.1443 6.4838 1.4411 15 6 9.6563 7.7905 0.8318 16 6 9.1476 7.9167 -0.6057 17 6 7.6176 7.9185 -0.6068 18 1 7.2548 8.7608 -0.0177 19 7 7.1305 8.0387 -1.9832 20 6 7.0016 9.2747 -2.5584 21 1 7.2587 10.1609 -1.9972 22 6 6.5395 9.3887 -3.8623 23 7 6.4152 10.5768 -4.4150 24 14 6.0942 7.8560 -4.8328 25 1 4.6610 7.5324 -4.6168 26 1 6.3347 8.0979 -6.2781 27 1 6.9328 6.7191 -4.3749 28 6 2.7201 3.3771 -1.1971 29 6 2.2623 2.0727 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9036 3.8849 2.1325 37 1 3.0955 5.9615 0.8898 38 1 3.0962 5.9613 -0.8901 39 1 5.1562 7.4534 0.0010 40 1 7.2499 5.5545 1.8739 41 1 7.2512 7.3276 2.0291 42 1 9.5071 5.6415 0.8520 43 1 9.5067 6.3943 2.4652 44 1 9.2935 8.6327 1.4208 45 1 10.7463 7.7890 0.8322 46 1 9.5126 8.8474 -1.0400 47 1 9.5103 7.0744 -1.1947 48 1 6.8991 7.2428 -2.4871 49 1 6.0926 10.6564 -5.3264 50 1 2.8966 3.8874 -2.1323 51 1 2.0824 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085346492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:46 Heat of formation + Delta-G solvation = -48.905847 kcal Electronic energy + Delta-G solvation = -28383.735213 eV Core-core repulsion = 24666.875820 eV Total energy + Delta-G solvation = -3716.859394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28714 -40.28043 -39.11393 -35.94660 -35.52838 -35.07505 -33.33849 -32.33894 -31.81843 -30.67870 -29.76069 -27.89548 -25.34991 -24.41087 -23.65142 -23.29295 -22.47201 -21.68249 -21.28912 -20.76064 -19.68608 -17.99914 -17.57436 -16.92389 -16.82696 -16.66529 -16.09559 -15.86437 -15.81595 -15.11500 -15.05367 -14.73043 -14.69495 -14.60220 -14.55862 -14.43688 -14.21405 -13.77042 -13.72571 -13.68123 -13.09992 -12.99990 -12.93066 -12.87521 -12.54408 -12.40717 -12.17481 -12.09547 -12.06387 -11.84301 -11.74012 -11.69824 -11.66150 -11.49466 -11.15314 -11.04288 -10.77436 -9.95362 -9.80472 -9.42525 -9.30736 -8.02439 -5.34150 0.39253 0.51916 1.33767 1.36362 1.42139 1.69184 2.27038 2.45364 2.89652 3.29224 3.45856 3.68849 3.75208 3.87500 3.93627 4.02211 4.13226 4.15932 4.18030 4.20573 4.25137 4.40361 4.46126 4.48098 4.50413 4.56858 4.58243 4.60077 4.66776 4.73445 4.76018 4.93362 4.99787 5.04376 5.07828 5.13104 5.18436 5.21840 5.22120 5.27084 5.29508 5.38027 5.45497 5.50844 5.53814 5.66435 5.68526 5.72640 5.78810 6.13054 6.21770 6.63381 7.06659 7.31248 7.83082 8.01256 9.18951 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003252 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.047981 B = 8606.881601 C =10480.323534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.081 4.081 7 C -0.101 4.101 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.176 3.824 18 H 0.062 0.938 19 N -0.748 5.748 20 C -0.215 4.215 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.942 3.058 25 H -0.277 1.277 26 H -0.299 1.299 27 H -0.269 1.269 28 C -0.125 4.125 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.411 0.589 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.359 0.641 49 H 0.256 0.744 50 H 0.114 0.886 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -17.336 15.899 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.130 4.130 6 C -0.081 4.081 7 C -0.140 4.140 8 C 0.301 3.699 9 O -0.458 6.458 10 N -0.361 5.361 11 C 0.041 3.959 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.171 4.171 17 C 0.067 3.933 18 H 0.080 0.920 19 N -0.390 5.390 20 C -0.346 4.346 21 H 0.084 0.916 22 C -0.247 4.247 23 N -0.631 5.631 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.226 1.226 27 H -0.195 1.195 28 C -0.143 4.143 29 C -0.147 4.147 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.247 0.753 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.191 0.809 49 H 0.065 0.935 50 H 0.132 0.868 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.643 -17.839 15.872 25.071 hybrid contribution -0.257 0.068 -1.568 1.591 sum -7.900 -17.771 14.304 24.142 Atomic orbital electron populations 1.21722 0.93922 1.02437 1.01928 1.20581 0.96760 0.91279 1.03449 1.20192 0.98756 0.97275 0.92935 1.21253 0.99956 0.94691 0.98366 1.21197 0.98834 0.95419 0.97546 1.19439 0.99483 0.95297 0.93886 1.20735 0.90455 0.95716 1.07093 1.20967 0.90726 0.83238 0.75013 1.90671 1.71298 1.32482 1.51364 1.46009 1.07094 1.08939 1.74096 1.21148 0.79797 0.97595 0.97368 0.92489 1.21787 0.96638 1.02265 0.94579 1.21482 0.94046 0.97534 1.01815 1.21512 1.00785 0.98062 0.94481 1.22076 0.96582 1.00869 0.97540 1.20658 0.93042 0.95142 0.84428 0.92013 1.42817 1.79801 1.03907 1.12489 1.18990 1.34225 0.85495 0.95888 0.91609 1.25276 1.02890 0.98319 0.98256 1.69845 1.55016 1.23294 1.14961 0.85617 0.78580 0.80693 0.78014 1.20280 1.22635 1.19495 1.21171 0.99649 0.95747 0.97706 1.21182 1.00422 0.94558 0.98562 0.91032 0.92595 0.93153 0.90781 0.90122 0.84171 0.84824 0.85090 0.87246 0.75328 0.92281 0.90295 0.92700 0.89569 0.91130 0.90889 0.93394 0.93472 0.80859 0.93488 0.86761 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.90 71.98 0.71 -1.08 16 2 C -0.08 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 5 C -0.11 -2.51 9.70 22.27 0.22 -2.30 16 6 C -0.08 -2.03 4.37 -19.87 -0.09 -2.12 16 7 C -0.10 -2.31 5.83 29.10 0.17 -2.14 16 8 C 0.51 15.36 7.79 87.66 0.68 16.05 16 9 O -0.58 -21.67 15.70 -3.01 -0.05 -21.71 16 10 N -0.71 -20.51 4.91 -442.54 -2.17 -22.68 16 11 C 0.15 4.52 1.97 44.99 0.09 4.61 16 12 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 13 C -0.11 -2.81 5.49 30.59 0.17 -2.64 16 14 C -0.11 -2.46 5.92 30.59 0.18 -2.27 16 15 C -0.11 -2.64 5.92 30.60 0.18 -2.46 16 16 C -0.13 -4.25 5.50 30.59 0.17 -4.08 16 17 C 0.18 6.16 2.29 44.99 0.10 6.26 16 18 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 19 N -0.75 -33.27 4.76 -322.94 -1.54 -34.81 16 20 C -0.21 -11.59 10.41 84.03 0.87 -10.72 16 21 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 22 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 23 N -0.98 -61.37 13.97 21.65 0.30 -61.07 16 24 Si 0.94 45.95 27.73 68.60 1.90 47.85 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 26 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 27 H -0.27 -12.58 6.52 99.48 0.65 -11.93 16 28 C -0.12 -3.28 9.70 22.27 0.22 -3.06 16 29 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.13 2.16 8.09 -2.39 -0.02 2.14 16 38 H 0.11 2.39 8.08 -2.38 -0.02 2.37 16 39 H 0.41 10.82 8.60 -92.70 -0.80 10.02 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.36 16.41 5.66 -92.71 -0.52 15.89 16 49 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 50 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 51 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -70.73 409.14 2.63 -68.10 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: -0.48 Total: 41.20 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.65 Total: -16.87 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.41 Total: -118.56 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -70.73 2.63 -68.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085346492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.194 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds