Wall clock time and date at job start Tue Mar 31 2020 16:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47264 * 2 1 4 4 C 1.38379 * 119.85393 * 264.72168 * 3 2 1 5 5 C 1.37940 * 120.14469 * 179.75916 * 4 3 2 6 6 C 1.39598 * 119.85197 * 0.51813 * 5 4 3 7 7 C 1.47841 * 120.14412 * 179.71951 * 6 5 4 8 8 O 1.21560 * 120.00175 * 149.32652 * 7 6 5 9 9 N 1.34770 * 120.00158 * 329.32804 * 7 6 5 10 10 C 1.46505 * 120.00293 * 4.67522 * 9 7 6 11 11 C 1.46499 * 120.00477 * 184.67329 * 9 7 6 12 12 C 1.53001 * 109.47220 * 94.73768 * 11 9 7 13 13 H 1.09008 * 112.96170 * 67.47869 * 12 11 9 14 14 C 1.53947 * 113.77148 * 295.80462 * 12 11 9 15 15 C 1.53945 * 86.28835 * 222.08917 * 14 12 11 16 16 N 1.47571 * 113.77284 * 199.30498 * 12 11 9 17 17 C 1.36945 * 134.49450 * 318.94573 * 16 12 11 18 18 H 1.07996 * 119.99890 * 5.46800 * 17 16 12 19 19 C 1.38812 * 119.99857 * 185.46596 * 17 16 12 20 20 N 1.31619 * 120.00566 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46980 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46952 * 120.00095 * 21 19 17 24 24 H 1.48492 * 109.47209 * 240.00239 * 21 19 17 25 25 C 1.39554 * 119.70965 * 359.73635 * 6 5 4 26 26 C 1.37978 * 119.85542 * 0.02562 * 25 6 5 27 27 C 1.50701 * 119.92994 * 180.02562 * 26 25 6 28 28 C 1.52996 * 109.47266 * 264.98250 * 27 26 25 29 29 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47556 * 299.99793 * 1 2 3 31 31 H 1.08999 * 109.46929 * 60.00233 * 1 2 3 32 32 H 1.09006 * 109.47270 * 119.99664 * 2 1 3 33 33 H 1.09002 * 109.47490 * 239.99808 * 2 1 3 34 34 H 1.07998 * 119.92561 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.07374 * 180.22998 * 5 4 3 36 36 H 1.09000 * 109.47203 * 94.89789 * 10 9 7 37 37 H 1.08991 * 109.47573 * 214.90679 * 10 9 7 38 38 H 1.09006 * 109.46880 * 334.90941 * 10 9 7 39 39 H 1.08996 * 109.47854 * 214.74222 * 11 9 7 40 40 H 1.09005 * 109.47096 * 334.74422 * 11 9 7 41 41 H 1.09000 * 113.74132 * 336.43362 * 14 12 11 42 42 H 1.08997 * 113.74302 * 107.63616 * 14 12 11 43 43 H 1.09002 * 113.77152 * 137.90916 * 15 14 12 44 44 H 1.09006 * 113.76654 * 269.19200 * 15 14 12 45 45 H 0.96994 * 120.00372 * 180.02562 * 20 19 17 46 46 H 1.08001 * 120.07340 * 179.97438 * 25 6 5 47 47 H 1.09004 * 109.46709 * 24.97890 * 27 26 25 48 48 H 1.08994 * 109.47132 * 144.97540 * 27 26 25 49 49 H 1.09004 * 109.46963 * 299.99484 * 28 27 26 50 50 H 1.08994 * 109.47624 * 59.99592 * 28 27 26 51 51 H 1.08998 * 109.47320 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3660 2.0334 -1.1951 5 6 2.8218 3.3353 -1.2025 6 6 2.9563 4.0313 0.0001 7 6 3.4500 5.4249 0.0002 8 8 3.0740 6.2029 0.8552 9 7 4.3169 5.8327 -0.9477 10 6 4.6910 4.9271 -2.0368 11 6 4.8852 7.1817 -0.8891 12 6 6.2401 7.1340 -0.1798 13 1 6.9998 6.5989 -0.7497 14 6 6.1533 6.7031 1.2956 15 6 7.1780 7.8170 1.5771 16 7 6.6895 8.4427 0.3330 17 6 6.6637 9.7234 -0.1511 18 1 6.1590 9.9391 -1.0812 19 6 7.2862 10.7445 0.5538 20 7 7.9018 10.4817 1.6871 21 14 7.2516 12.4914 -0.1069 22 1 6.5019 12.5212 -1.3885 23 1 6.5834 13.3798 0.8776 24 1 8.6414 12.9621 -0.3350 25 6 2.6230 3.4058 1.2023 26 6 2.1636 2.1048 1.1953 27 6 1.8027 1.4278 2.4924 28 6 2.9989 0.6170 2.9947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.2654 1.4924 -2.1244 35 1 3.0784 3.8136 -2.1362 36 1 4.0560 5.1175 -2.9020 37 1 5.7334 5.0949 -2.3071 38 1 4.5617 3.8948 -1.7116 39 1 5.0182 7.5644 -1.9010 40 1 4.2100 7.8369 -0.3387 41 1 5.1774 6.8801 1.7478 42 1 6.5323 5.6984 1.4824 43 1 6.9617 8.3964 2.4747 44 1 8.2145 7.4835 1.5257 45 1 8.3364 11.1952 2.1798 46 1 2.7252 3.9386 2.1361 47 1 1.5375 2.1815 3.2340 48 1 0.9545 0.7625 2.3313 49 1 3.2641 -0.1367 2.2531 50 1 3.8470 1.2823 3.1558 51 1 2.7380 0.1277 3.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086006584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:21 Heat of formation + Delta-G solvation = 51.626110 kcal Electronic energy + Delta-G solvation = -28659.178204 eV Core-core repulsion = 24946.678203 eV Total energy + Delta-G solvation = -3712.500001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63745 -39.15059 -37.58104 -35.53921 -34.67565 -33.67815 -32.09538 -30.19150 -29.98053 -28.04097 -27.75372 -26.69062 -24.75469 -23.99326 -23.21351 -22.41868 -21.77393 -21.03836 -19.29984 -18.91774 -16.99432 -16.64107 -16.51412 -16.03957 -15.69058 -15.45233 -14.68027 -14.65340 -14.23355 -13.99005 -13.94789 -13.93090 -13.67760 -13.46207 -13.42542 -12.91868 -12.74892 -12.73560 -12.41922 -12.27585 -12.06774 -11.97682 -11.58053 -11.40835 -11.39824 -11.31014 -11.00928 -10.95063 -10.80717 -10.72987 -10.64132 -10.36207 -9.82864 -9.67822 -9.58410 -9.39097 -8.98208 -8.73157 -8.69824 -8.28944 -6.78569 -5.69643 -3.01279 0.82468 1.20078 2.89075 3.15887 3.43286 3.48105 3.50866 3.69977 4.39333 4.47269 4.52118 4.55838 4.66384 4.74159 4.92035 4.99631 5.01239 5.13655 5.15674 5.23108 5.29696 5.30604 5.35139 5.38578 5.48966 5.52196 5.54711 5.61683 5.66909 5.68042 5.70772 5.79009 5.85855 5.91277 5.94442 6.01778 6.04825 6.15999 6.18572 6.27591 6.42427 6.45188 6.60588 6.72707 6.79065 6.82741 6.86987 7.35146 7.52917 7.64364 7.68159 8.06159 8.40615 9.11908 9.78440 10.69677 11.48181 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002539 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.855358 B =11027.271146 C =11597.607550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.126 4.126 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.554 3.446 8 O -0.526 6.526 9 N -0.602 5.602 10 C 0.058 3.942 11 C 0.115 3.885 12 C 0.129 3.871 13 H 0.041 0.959 14 C -0.159 4.159 15 C 0.165 3.835 16 N -0.600 5.600 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.058 4.058 26 C -0.088 4.088 27 C -0.088 4.088 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.252 0.748 46 H 0.132 0.868 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -25.198 -4.988 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.144 4.144 5 C -0.125 4.125 6 C -0.128 4.128 7 C 0.342 3.658 8 O -0.403 6.403 9 N -0.334 5.334 10 C -0.085 4.085 11 C -0.008 4.008 12 C 0.020 3.980 13 H 0.058 0.942 14 C -0.198 4.198 15 C 0.040 3.960 16 N -0.326 5.326 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.077 4.077 26 C -0.088 4.088 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.150 0.850 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.791 -24.395 -4.535 27.916 hybrid contribution 0.369 1.069 -0.619 1.290 sum -12.422 -23.326 -5.155 26.925 Atomic orbital electron populations 1.21762 0.94621 1.01719 1.02432 1.20643 0.96303 0.92695 1.03102 1.19900 0.97658 0.96052 0.92652 1.20957 1.00768 0.95159 0.97559 1.21958 0.97608 0.94717 0.98264 1.19960 1.03827 0.94488 0.94481 1.18301 0.78992 0.87076 0.81400 1.90804 1.57552 1.54802 1.37165 1.47657 1.44294 1.15626 1.25870 1.22491 1.01301 0.95080 0.89611 1.21842 0.96419 0.81342 1.01199 1.22499 0.92711 0.88612 0.94131 0.94197 1.23821 1.01654 0.97459 0.96823 1.22093 0.93278 0.89084 0.91521 1.45974 1.69318 1.00080 1.17271 1.19031 1.28611 0.82006 1.05207 0.90351 1.24800 1.00006 0.98031 0.97651 1.69848 1.39908 1.31270 1.15661 0.86085 0.77143 0.84767 0.78016 1.20492 1.21739 1.21832 1.21113 0.95255 0.93621 0.97674 1.19668 1.00377 0.93904 0.94889 1.20603 0.98738 0.99391 0.93782 1.21773 0.98051 1.00006 1.00739 0.92362 0.92316 0.92476 0.90469 0.91017 0.85688 0.83787 0.92443 0.91080 0.89251 0.91398 0.88693 0.89756 0.93980 0.91609 0.95677 0.93764 0.85000 0.90819 0.90626 0.92528 0.92259 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.72 37.16 0.36 -0.51 16 2 C -0.09 -0.58 5.38 -27.89 -0.15 -0.73 16 3 C -0.06 -0.55 5.14 -104.53 -0.54 -1.09 16 4 C -0.13 -1.10 9.66 -39.64 -0.38 -1.49 16 5 C -0.11 -1.10 7.45 -39.18 -0.29 -1.39 16 6 C -0.12 -1.65 5.51 -104.97 -0.58 -2.23 16 7 C 0.55 9.24 6.93 -12.33 -0.09 9.15 16 8 O -0.53 -10.91 14.83 5.31 0.08 -10.83 16 9 N -0.60 -9.27 2.79 -182.69 -0.51 -9.78 16 10 C 0.06 0.62 8.82 59.85 0.53 1.15 16 11 C 0.11 2.17 5.46 -4.04 -0.02 2.14 16 12 C 0.13 2.74 4.59 -66.87 -0.31 2.44 16 13 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 14 C -0.16 -3.42 7.22 -25.80 -0.19 -3.60 16 15 C 0.17 4.20 7.39 -2.98 -0.02 4.18 16 16 N -0.60 -16.00 3.57 -170.76 -0.61 -16.60 16 17 C -0.22 -6.34 10.51 -15.06 -0.16 -6.50 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -28.31 11.53 55.49 0.64 -27.67 16 21 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 C -0.06 -0.73 9.23 -39.19 -0.36 -1.09 16 26 C -0.09 -0.89 5.13 -104.68 -0.54 -1.42 16 27 C -0.09 -0.70 5.38 -27.88 -0.15 -0.85 16 28 C -0.15 -1.08 9.72 37.16 0.36 -0.72 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.46 5.60 -51.93 -0.29 0.16 16 33 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.23 4.67 -52.49 -0.25 0.98 16 36 H 0.06 0.50 7.49 -51.93 -0.39 0.11 16 37 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.09 0.83 4.57 -51.93 -0.24 0.60 16 39 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 40 H 0.09 2.10 7.23 -51.93 -0.38 1.72 16 41 H 0.08 1.94 6.68 -51.93 -0.35 1.59 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.83 7.42 -51.93 -0.39 1.45 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.13 1.76 7.94 -52.49 -0.42 1.34 16 47 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.08 0.51 5.59 -51.93 -0.29 0.22 16 49 H 0.06 0.38 6.79 -51.93 -0.35 0.03 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -34.37 396.58 -10.35 -44.72 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.29 Total: -0.66 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.62 Total: -2.90 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.48 Total: -54.05 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.37 -10.35 -44.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086006584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.343 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds