Wall clock time and date at job start Tue Mar 31 2020 16:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47264 * 2 1 4 4 C 1.38379 * 119.85393 * 264.72168 * 3 2 1 5 5 C 1.37940 * 120.14469 * 179.75916 * 4 3 2 6 6 C 1.39598 * 119.85197 * 0.51813 * 5 4 3 7 7 C 1.47841 * 120.14412 * 179.71951 * 6 5 4 8 8 O 1.21560 * 120.00175 * 149.32652 * 7 6 5 9 9 N 1.34770 * 120.00158 * 329.32804 * 7 6 5 10 10 C 1.46505 * 120.00293 * 4.67522 * 9 7 6 11 11 C 1.46499 * 120.00477 * 184.67329 * 9 7 6 12 12 C 1.53001 * 109.47220 * 94.73768 * 11 9 7 13 13 H 1.09008 * 112.96170 * 67.47869 * 12 11 9 14 14 C 1.53947 * 113.77148 * 295.80462 * 12 11 9 15 15 C 1.53945 * 86.28835 * 222.08917 * 14 12 11 16 16 N 1.47571 * 113.77284 * 199.30498 * 12 11 9 17 17 C 1.36945 * 134.49450 * 318.94573 * 16 12 11 18 18 H 1.07996 * 119.99890 * 5.46800 * 17 16 12 19 19 C 1.38812 * 119.99857 * 185.46596 * 17 16 12 20 20 N 1.31619 * 120.00566 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46980 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46952 * 120.00095 * 21 19 17 24 24 H 1.48492 * 109.47209 * 240.00239 * 21 19 17 25 25 C 1.39554 * 119.70965 * 359.73635 * 6 5 4 26 26 C 1.37978 * 119.85542 * 0.02562 * 25 6 5 27 27 C 1.50701 * 119.92994 * 180.02562 * 26 25 6 28 28 C 1.52996 * 109.47266 * 264.98250 * 27 26 25 29 29 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47556 * 299.99793 * 1 2 3 31 31 H 1.08999 * 109.46929 * 60.00233 * 1 2 3 32 32 H 1.09006 * 109.47270 * 119.99664 * 2 1 3 33 33 H 1.09002 * 109.47490 * 239.99808 * 2 1 3 34 34 H 1.07998 * 119.92561 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.07374 * 180.22998 * 5 4 3 36 36 H 1.09000 * 109.47203 * 94.89789 * 10 9 7 37 37 H 1.08991 * 109.47573 * 214.90679 * 10 9 7 38 38 H 1.09006 * 109.46880 * 334.90941 * 10 9 7 39 39 H 1.08996 * 109.47854 * 214.74222 * 11 9 7 40 40 H 1.09005 * 109.47096 * 334.74422 * 11 9 7 41 41 H 1.09000 * 113.74132 * 336.43362 * 14 12 11 42 42 H 1.08997 * 113.74302 * 107.63616 * 14 12 11 43 43 H 1.09002 * 113.77152 * 137.90916 * 15 14 12 44 44 H 1.09006 * 113.76654 * 269.19200 * 15 14 12 45 45 H 0.96994 * 120.00372 * 180.02562 * 20 19 17 46 46 H 1.08001 * 120.07340 * 179.97438 * 25 6 5 47 47 H 1.09004 * 109.46709 * 24.97890 * 27 26 25 48 48 H 1.08994 * 109.47132 * 144.97540 * 27 26 25 49 49 H 1.09004 * 109.46963 * 299.99484 * 28 27 26 50 50 H 1.08994 * 109.47624 * 59.99592 * 28 27 26 51 51 H 1.08998 * 109.47320 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3660 2.0334 -1.1951 5 6 2.8218 3.3353 -1.2025 6 6 2.9563 4.0313 0.0001 7 6 3.4500 5.4249 0.0002 8 8 3.0740 6.2029 0.8552 9 7 4.3169 5.8327 -0.9477 10 6 4.6910 4.9271 -2.0368 11 6 4.8852 7.1817 -0.8891 12 6 6.2401 7.1340 -0.1798 13 1 6.9998 6.5989 -0.7497 14 6 6.1533 6.7031 1.2956 15 6 7.1780 7.8170 1.5771 16 7 6.6895 8.4427 0.3330 17 6 6.6637 9.7234 -0.1511 18 1 6.1590 9.9391 -1.0812 19 6 7.2862 10.7445 0.5538 20 7 7.9018 10.4817 1.6871 21 14 7.2516 12.4914 -0.1069 22 1 6.5019 12.5212 -1.3885 23 1 6.5834 13.3798 0.8776 24 1 8.6414 12.9621 -0.3350 25 6 2.6230 3.4058 1.2023 26 6 2.1636 2.1048 1.1953 27 6 1.8027 1.4278 2.4924 28 6 2.9989 0.6170 2.9947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.2654 1.4924 -2.1244 35 1 3.0784 3.8136 -2.1362 36 1 4.0560 5.1175 -2.9020 37 1 5.7334 5.0949 -2.3071 38 1 4.5617 3.8948 -1.7116 39 1 5.0182 7.5644 -1.9010 40 1 4.2100 7.8369 -0.3387 41 1 5.1774 6.8801 1.7478 42 1 6.5323 5.6984 1.4824 43 1 6.9617 8.3964 2.4747 44 1 8.2145 7.4835 1.5257 45 1 8.3364 11.1952 2.1798 46 1 2.7252 3.9386 2.1361 47 1 1.5375 2.1815 3.2340 48 1 0.9545 0.7625 2.3313 49 1 3.2641 -0.1367 2.2531 50 1 3.8470 1.2823 3.1558 51 1 2.7380 0.1277 3.9331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086006584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:20 Heat of formation + Delta-G solvation = 32.487542 kcal Electronic energy + Delta-G solvation = -28660.008114 eV Core-core repulsion = 24946.678203 eV Total energy + Delta-G solvation = -3713.329911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68142 -40.29954 -39.29258 -36.75868 -35.55249 -34.30579 -34.23331 -31.09077 -30.86107 -29.87901 -29.18361 -27.76145 -25.60178 -25.28867 -24.88490 -23.77633 -22.46692 -21.97389 -20.87380 -20.38332 -18.70619 -17.92333 -17.64294 -17.10317 -16.90889 -16.70438 -16.26362 -15.86950 -15.65614 -15.27357 -14.87933 -14.75357 -14.64026 -14.50224 -14.21823 -14.14775 -13.99486 -13.82027 -13.45991 -13.37196 -13.27439 -13.02738 -12.95158 -12.73563 -12.60327 -12.51175 -12.27769 -12.13099 -12.10035 -11.99504 -11.86026 -11.65288 -11.60264 -11.39557 -11.29689 -10.88892 -10.81224 -9.85102 -9.62233 -9.48378 -8.91149 -7.91374 -5.24722 -0.04868 0.41654 1.42652 1.45215 1.54882 1.73782 1.97916 2.47851 2.79762 3.27519 3.37177 3.54339 3.76952 3.86063 3.88351 3.96366 4.12922 4.17363 4.19865 4.27198 4.33288 4.41758 4.49388 4.49915 4.57195 4.57638 4.60385 4.63812 4.74054 4.79904 4.80372 4.89270 4.91284 4.96400 5.03190 5.05606 5.08123 5.12907 5.14357 5.19666 5.25585 5.36118 5.38345 5.46408 5.48334 5.51999 5.53198 5.69102 5.71737 5.91707 6.00893 6.40657 6.89973 7.15674 7.59938 8.56414 9.27191 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002539 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.855358 B =11027.271146 C =11597.607550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.057 4.057 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.147 4.147 7 C 0.548 3.452 8 O -0.583 6.583 9 N -0.599 5.599 10 C 0.050 3.950 11 C 0.129 3.871 12 C 0.136 3.864 13 H 0.063 0.937 14 C -0.135 4.135 15 C 0.162 3.838 16 N -0.629 5.629 17 C -0.227 4.227 18 H 0.088 0.912 19 C -0.074 4.074 20 N -0.958 5.958 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.290 1.290 25 C -0.080 4.080 26 C -0.091 4.091 27 C -0.088 4.088 28 C -0.146 4.146 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.023 0.977 45 H 0.247 0.753 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.041 0.959 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.609 -28.417 -8.092 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.057 4.057 4 C -0.138 4.138 5 C -0.120 4.120 6 C -0.150 4.150 7 C 0.339 3.661 8 O -0.464 6.464 9 N -0.330 5.330 10 C -0.091 4.091 11 C 0.005 3.995 12 C 0.030 3.970 13 H 0.080 0.920 14 C -0.173 4.173 15 C 0.036 3.964 16 N -0.355 5.355 17 C -0.355 4.355 18 H 0.106 0.894 19 C -0.267 4.267 20 N -0.608 5.608 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.223 1.223 24 H -0.217 1.217 25 C -0.099 4.099 26 C -0.091 4.091 27 C -0.125 4.125 28 C -0.203 4.203 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.125 0.875 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.727 -27.673 -7.698 31.836 hybrid contribution 0.594 1.921 0.349 2.040 sum -13.134 -25.752 -7.349 29.828 Atomic orbital electron populations 1.21763 0.94173 1.02624 1.01954 1.20724 0.96525 0.90908 1.04428 1.20296 0.96072 0.97242 0.92094 1.21366 0.99077 0.94481 0.98873 1.22161 0.97010 0.95227 0.97609 1.19764 1.06294 0.92880 0.96097 1.18938 0.78509 0.88129 0.80529 1.90769 1.59671 1.56553 1.39407 1.47684 1.43574 1.14865 1.26900 1.22852 1.02447 0.94914 0.88851 1.21399 0.94037 0.83070 1.01042 1.22647 0.94219 0.85876 0.94278 0.91995 1.23518 0.99274 0.97543 0.96986 1.22006 0.94066 0.90128 0.90183 1.46307 1.69656 1.01269 1.18312 1.19462 1.27619 0.83266 1.05146 0.89417 1.25712 1.00461 1.02332 0.98145 1.70046 1.41390 1.32167 1.17150 0.84986 0.77047 0.79361 0.77824 1.18504 1.22313 1.21720 1.21076 0.97051 0.94964 0.96814 1.19860 0.99837 0.92932 0.96520 1.20649 0.99667 0.99426 0.92757 1.21754 0.97030 0.99758 1.01725 0.90802 0.93122 0.92697 0.89787 0.89135 0.82207 0.81708 0.89548 0.90254 0.87480 0.89528 0.92694 0.91786 0.91096 0.95270 0.95941 0.94384 0.87486 0.91802 0.88851 0.91504 0.93966 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.72 71.98 0.70 -0.53 16 2 C -0.09 -0.78 5.38 29.85 0.16 -0.62 16 3 C -0.06 -0.83 5.14 -19.81 -0.10 -0.93 16 4 C -0.12 -1.62 9.66 22.23 0.21 -1.40 16 5 C -0.10 -1.80 7.45 22.53 0.17 -1.63 16 6 C -0.15 -3.86 5.51 -20.09 -0.11 -3.97 16 7 C 0.55 18.66 6.93 86.79 0.60 19.26 16 8 O -0.58 -25.81 14.83 -3.91 -0.06 -25.87 16 9 N -0.60 -17.88 2.79 -850.19 -2.37 -20.25 16 10 C 0.05 0.90 8.82 127.77 1.13 2.03 16 11 C 0.13 4.84 5.46 86.38 0.47 5.31 16 12 C 0.14 5.80 4.59 45.09 0.21 6.01 16 13 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 14 C -0.13 -5.94 7.22 31.25 0.23 -5.71 16 15 C 0.16 8.57 7.39 86.48 0.64 9.21 16 16 N -0.63 -34.29 3.57 -694.15 -2.48 -36.77 16 17 C -0.23 -13.22 10.51 84.03 0.88 -12.33 16 18 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 19 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 20 N -0.96 -61.24 11.53 21.65 0.25 -60.99 16 21 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.08 -2.08 9.23 22.53 0.21 -1.87 16 26 C -0.09 -1.74 5.13 -19.90 -0.10 -1.85 16 27 C -0.09 -1.32 5.38 29.85 0.16 -1.16 16 28 C -0.15 -1.93 9.72 71.98 0.70 -1.23 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.51 6.79 -2.39 -0.02 0.49 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.66 5.60 -2.38 -0.01 0.65 16 33 H 0.09 0.51 8.05 -2.39 -0.02 0.49 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.17 2.12 4.67 -2.91 -0.01 2.11 16 36 H 0.09 1.11 7.49 -2.39 -0.02 1.09 16 37 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 38 H 0.11 1.60 4.57 -2.38 -0.01 1.59 16 39 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 40 H 0.05 2.52 7.23 -2.38 -0.02 2.51 16 41 H 0.06 3.11 6.68 -2.39 -0.02 3.09 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.03 1.73 7.42 -2.39 -0.02 1.71 16 44 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.11 3.19 7.94 -2.91 -0.02 3.17 16 47 H 0.06 1.07 8.05 -2.38 -0.02 1.05 16 48 H 0.09 1.06 5.59 -2.39 -0.01 1.05 16 49 H 0.07 0.74 6.79 -2.38 -0.02 0.73 16 50 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.75 396.58 4.90 -74.85 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.92 Total: 14.68 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 6.62 Total: 4.60 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.60 Total: -118.02 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.06 Total: -25.87 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -79.75 4.90 -74.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086006584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.336 kcal (2) G-P(sol) polarization free energy of solvation -79.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds