Wall clock time and date at job start Tue Mar 31 2020 16:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50695 * 109.47333 * 2 1 4 4 C 1.38384 * 119.85484 * 265.00245 * 3 2 1 5 5 C 1.37932 * 120.14761 * 179.97438 * 4 3 2 6 6 C 1.39593 * 119.85540 * 0.02562 * 5 4 3 7 7 C 1.47847 * 120.14629 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99880 * 200.72529 * 7 6 5 9 9 N 1.34773 * 119.99940 * 20.71982 * 7 6 5 10 10 C 1.46505 * 120.00226 * 5.40309 * 9 7 6 11 11 C 1.46503 * 119.99902 * 185.40725 * 9 7 6 12 12 C 1.52996 * 109.46921 * 264.73452 * 11 9 7 13 13 H 1.08996 * 112.96789 * 295.06548 * 12 11 9 14 14 C 1.53945 * 113.76765 * 66.74684 * 12 11 9 15 15 C 1.53948 * 86.29047 * 137.90717 * 14 12 11 16 16 N 1.47582 * 113.76614 * 163.38748 * 12 11 9 17 17 C 1.36938 * 134.49093 * 41.07366 * 16 12 11 18 18 H 1.07994 * 120.00442 * 4.77976 * 17 16 12 19 19 C 1.38813 * 119.99729 * 184.77896 * 17 16 12 20 20 N 1.31617 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47083 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47153 * 119.99873 * 21 19 17 24 24 H 1.48504 * 109.47112 * 239.99914 * 21 19 17 25 25 C 1.39552 * 119.70827 * 0.24731 * 6 5 4 26 26 C 1.37986 * 119.85584 * 359.49934 * 25 6 5 27 27 C 1.50694 * 119.92783 * 180.25296 * 26 25 6 28 28 C 1.53003 * 109.46916 * 265.22901 * 27 26 25 29 29 H 1.09002 * 109.47095 * 60.00309 * 1 2 3 30 30 H 1.09004 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47666 * 300.00322 * 1 2 3 32 32 H 1.08999 * 109.47666 * 239.99678 * 2 1 3 33 33 H 1.09002 * 109.47095 * 119.99691 * 2 1 3 34 34 H 1.08003 * 119.92366 * 359.97438 * 4 3 2 35 35 H 1.08007 * 120.07140 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47184 * 264.42079 * 10 9 7 37 37 H 1.08997 * 109.46918 * 144.41712 * 10 9 7 38 38 H 1.09005 * 109.46666 * 24.42675 * 10 9 7 39 39 H 1.08994 * 109.46942 * 24.73665 * 11 9 7 40 40 H 1.09005 * 109.47264 * 144.73459 * 11 9 7 41 41 H 1.09000 * 113.74403 * 252.24939 * 14 12 11 42 42 H 1.08998 * 113.74542 * 23.45520 * 14 12 11 43 43 H 1.08999 * 113.77154 * 90.69332 * 15 14 12 44 44 H 1.09005 * 113.77234 * 221.97943 * 15 14 12 45 45 H 0.96999 * 120.00350 * 179.97438 * 20 19 17 46 46 H 1.08005 * 120.07523 * 179.75278 * 25 6 5 47 47 H 1.08990 * 109.47708 * 25.23112 * 27 26 25 48 48 H 1.09006 * 109.47239 * 145.23540 * 27 26 25 49 49 H 1.09005 * 109.46944 * 60.00725 * 28 27 26 50 50 H 1.08999 * 109.47265 * 179.97438 * 28 27 26 51 51 H 1.08997 * 109.47456 * 300.00736 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0354 -1.1956 5 6 2.8204 3.3358 -1.2027 6 6 2.9550 4.0318 -0.0002 7 6 3.4479 5.4257 -0.0002 8 8 3.9195 5.9035 1.0130 9 7 3.3743 6.1664 -1.1238 10 6 2.6999 5.6331 -2.3100 11 6 3.9689 7.5049 -1.1589 12 6 2.8951 8.5483 -0.8441 13 1 2.1110 8.5931 -1.5999 14 6 2.3628 8.4750 0.5985 15 6 2.4267 10.0131 0.5940 16 7 3.4396 9.8688 -0.4728 17 6 4.4693 10.6459 -0.9323 18 1 5.0333 10.3372 -1.7999 19 6 4.7880 11.8305 -0.2827 20 7 4.1002 12.2071 0.7744 21 14 6.1930 12.8903 -0.9089 22 1 6.8026 12.2498 -2.1020 23 1 5.6747 14.2322 -1.2775 24 1 7.2192 13.0312 0.1552 25 6 2.6277 3.4042 1.2025 26 6 2.1637 2.1047 1.1953 27 6 1.8044 1.4274 2.4926 28 6 3.0015 0.6167 2.9932 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.2563 1.4956 -2.1253 35 1 3.0758 3.8144 -2.1366 36 1 3.4368 5.1842 -2.9759 37 1 2.1853 6.4414 -2.8295 38 1 1.9756 4.8769 -2.0069 39 1 4.7654 7.5682 -0.4176 40 1 4.3797 7.6941 -2.1507 41 1 1.3503 8.0781 0.6731 42 1 3.0551 8.0074 1.2986 43 1 1.5051 10.4902 0.2607 44 1 2.8159 10.4395 1.5186 45 1 4.3231 13.0347 1.2285 46 1 2.7333 3.9359 2.1367 47 1 1.5398 2.1806 3.2346 48 1 0.9563 0.7617 2.3322 49 1 3.8496 1.2824 3.1537 50 1 2.7418 0.1271 3.9318 51 1 3.2662 -0.1365 2.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086006585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:23 Heat of formation + Delta-G solvation = 37.118211 kcal Electronic energy + Delta-G solvation = -28597.918519 eV Core-core repulsion = 24884.789409 eV Total energy + Delta-G solvation = -3713.129111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68128 -40.28032 -39.25880 -36.80130 -35.53314 -34.30340 -34.21881 -31.09575 -30.86362 -29.87354 -29.14835 -27.81574 -25.58272 -25.26301 -24.87739 -23.75255 -22.46074 -21.96851 -20.84178 -20.40254 -18.73034 -17.90964 -17.66453 -17.07489 -16.83562 -16.72559 -16.20963 -15.86011 -15.58089 -15.32299 -14.87016 -14.76205 -14.61275 -14.50341 -14.16581 -14.10831 -14.02459 -13.86647 -13.57412 -13.40081 -13.32455 -12.97931 -12.89946 -12.58101 -12.55045 -12.42816 -12.29668 -12.22813 -12.07919 -11.99367 -11.80975 -11.63005 -11.59062 -11.38648 -11.31397 -10.86133 -10.78998 -9.84269 -9.62090 -9.48082 -8.89692 -7.88429 -5.23615 -0.07729 0.42573 1.43015 1.45850 1.55349 1.81058 1.96264 2.48349 2.83181 3.29432 3.37888 3.55043 3.76750 3.87468 3.90749 3.96755 4.12669 4.17359 4.19828 4.28457 4.33677 4.43527 4.48697 4.50400 4.57297 4.58199 4.59778 4.63882 4.74159 4.79957 4.80833 4.88249 4.91342 5.00495 5.03839 5.05674 5.07793 5.13035 5.14259 5.23399 5.25583 5.35356 5.38618 5.46967 5.50087 5.52803 5.53883 5.70984 5.75149 5.94263 6.01539 6.42170 6.90522 7.17904 7.61362 8.58109 9.28579 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002477 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.903592 B =11299.486320 C =11687.641347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.055 4.055 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.150 4.150 7 C 0.546 3.454 8 O -0.580 6.580 9 N -0.600 5.600 10 C 0.053 3.947 11 C 0.131 3.869 12 C 0.137 3.863 13 H 0.063 0.937 14 C -0.134 4.134 15 C 0.150 3.850 16 N -0.629 5.629 17 C -0.226 4.226 18 H 0.089 0.911 19 C -0.075 4.075 20 N -0.957 5.957 21 Si 0.980 3.020 22 H -0.260 1.260 23 H -0.292 1.292 24 H -0.296 1.296 25 C -0.078 4.078 26 C -0.094 4.094 27 C -0.087 4.087 28 C -0.146 4.146 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.039 0.961 45 H 0.246 0.754 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -31.057 -6.286 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.056 4.056 4 C -0.140 4.140 5 C -0.125 4.125 6 C -0.153 4.153 7 C 0.337 3.663 8 O -0.461 6.461 9 N -0.332 5.332 10 C -0.088 4.088 11 C 0.007 3.993 12 C 0.030 3.970 13 H 0.081 0.919 14 C -0.172 4.172 15 C 0.025 3.975 16 N -0.356 5.356 17 C -0.354 4.354 18 H 0.106 0.894 19 C -0.267 4.267 20 N -0.607 5.607 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.219 1.219 24 H -0.223 1.223 25 C -0.097 4.097 26 C -0.094 4.094 27 C -0.125 4.125 28 C -0.203 4.203 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.112 0.888 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.066 -30.537 -5.813 32.115 hybrid contribution 0.820 1.772 0.303 1.976 sum -7.246 -28.765 -5.509 30.171 Atomic orbital electron populations 1.21759 0.93962 1.02636 1.02084 1.20725 0.96696 0.90907 1.04306 1.20315 0.95953 0.97161 0.92147 1.21384 0.99577 0.94199 0.98846 1.22486 0.96912 0.95104 0.97986 1.19781 1.06526 0.93028 0.95960 1.18949 0.78311 0.86472 0.82618 1.90761 1.47777 1.73857 1.33725 1.47692 1.56335 1.15520 1.13625 1.22846 0.98120 1.01385 0.86409 1.21401 0.95384 0.80582 1.01924 1.22652 0.94112 0.85035 0.95183 0.91934 1.23507 0.99846 0.96322 0.97500 1.22228 0.89952 0.92903 0.92435 1.46304 1.32191 1.17675 1.39386 1.19463 1.05991 1.00984 1.08938 0.89355 1.25711 1.02428 1.00118 0.98464 1.70053 1.43610 1.24183 1.22848 0.84980 0.78347 0.78239 0.77604 1.18397 1.21866 1.22323 1.21113 0.96785 0.94987 0.96846 1.19866 1.00046 0.92964 0.96509 1.20644 0.99589 0.99442 0.92776 1.21759 0.97078 0.99731 1.01748 0.92495 0.90878 0.93035 0.89273 0.89907 0.82263 0.81082 0.89247 0.90240 0.87713 0.92932 0.89485 0.91514 0.91551 0.96049 0.94250 0.94460 0.87395 0.91680 0.88764 0.94162 0.90913 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 71.98 0.70 -0.47 16 2 C -0.09 -0.79 5.37 29.84 0.16 -0.63 16 3 C -0.06 -0.81 5.14 -19.81 -0.10 -0.92 16 4 C -0.12 -1.66 9.66 22.23 0.21 -1.44 16 5 C -0.11 -1.89 7.58 22.52 0.17 -1.72 16 6 C -0.15 -3.94 5.59 -20.09 -0.11 -4.05 16 7 C 0.55 18.59 7.21 86.79 0.63 19.22 16 8 O -0.58 -25.66 14.19 -3.86 -0.05 -25.71 16 9 N -0.60 -17.88 2.81 -850.19 -2.39 -20.27 16 10 C 0.05 0.94 8.69 127.77 1.11 2.05 16 11 C 0.13 4.94 5.39 86.38 0.47 5.41 16 12 C 0.14 5.84 4.56 45.09 0.21 6.05 16 13 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.13 -5.99 7.22 31.25 0.23 -5.77 16 15 C 0.15 8.00 7.64 86.44 0.66 8.66 16 16 N -0.63 -34.30 3.58 -690.88 -2.48 -36.77 16 17 C -0.23 -13.10 10.51 84.03 0.88 -12.22 16 18 H 0.09 4.80 7.83 -2.91 -0.02 4.77 16 19 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.96 -61.35 11.32 21.65 0.25 -61.10 16 21 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 25 C -0.08 -2.04 9.22 22.53 0.21 -1.83 16 26 C -0.09 -1.79 5.13 -19.90 -0.10 -1.89 16 27 C -0.09 -1.31 5.37 29.85 0.16 -1.15 16 28 C -0.15 -1.98 9.72 71.98 0.70 -1.28 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.49 6.79 -2.39 -0.02 0.47 16 32 H 0.09 0.53 8.05 -2.39 -0.02 0.51 16 33 H 0.08 0.67 5.59 -2.39 -0.01 0.66 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 2.20 4.06 -2.91 -0.01 2.18 16 36 H 0.09 1.10 7.20 -2.39 -0.02 1.08 16 37 H 0.08 1.33 8.11 -2.39 -0.02 1.31 16 38 H 0.10 1.55 4.94 -2.38 -0.01 1.54 16 39 H 0.05 2.42 7.34 -2.39 -0.02 2.40 16 40 H 0.09 2.92 8.11 -2.38 -0.02 2.90 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.07 3.32 6.41 -2.39 -0.02 3.30 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.04 2.37 6.97 -2.38 -0.02 2.35 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.11 3.24 7.79 -2.91 -0.02 3.21 16 47 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 48 H 0.09 1.05 5.60 -2.38 -0.01 1.04 16 49 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.76 6.79 -2.39 -0.02 0.74 16 Total: -1.00 -79.70 395.00 4.91 -74.79 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.92 Total: 15.38 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.64 Total: 4.00 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -4.62 Total: -118.14 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -79.70 4.91 -74.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086006585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.905 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds