Wall clock time and date at job start Tue Mar 31 2020 16:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47107 * 119.99617 * 2 1 4 4 O 1.21615 * 119.99959 * 287.91556 * 3 2 1 5 5 N 1.34776 * 119.99712 * 107.91744 * 3 2 1 6 6 C 1.48149 * 127.83819 * 6.19508 * 5 3 2 7 7 C 1.55872 * 104.84282 * 219.32009 * 6 5 3 8 8 H 1.09004 * 111.29190 * 217.10397 * 7 6 5 9 9 C 1.54165 * 104.30134 * 336.62576 * 7 6 5 10 10 H 1.09004 * 111.00133 * 239.14670 * 9 7 6 11 11 C 1.48148 * 127.83290 * 186.19162 * 5 3 2 12 12 C 1.53277 * 109.35585 * 116.42175 * 9 7 6 13 13 H 1.09002 * 110.49677 * 181.73981 * 12 9 7 14 14 C 1.53321 * 108.74552 * 59.75416 * 12 9 7 15 15 C 1.53350 * 109.55747 * 299.36804 * 14 12 9 16 16 C 1.52987 * 108.21171 * 93.54360 * 7 6 5 17 17 H 1.09002 * 109.71927 * 65.93636 * 16 7 6 18 18 C 1.53607 * 109.67504 * 305.45580 * 16 7 6 19 19 N 1.47641 * 106.80690 * 300.69286 * 18 16 7 20 20 C 1.36937 * 122.05660 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00138 * 189.92851 * 20 19 18 22 22 C 1.38810 * 120.00080 * 9.93392 * 20 19 18 23 23 N 1.31626 * 120.00034 * 11.71882 * 22 20 19 24 24 Si 1.86799 * 120.00358 * 191.71686 * 22 20 19 25 25 H 1.48499 * 109.46916 * 90.00104 * 24 22 20 26 26 H 1.48491 * 109.47512 * 210.00208 * 24 22 20 27 27 H 1.48501 * 109.46857 * 330.00355 * 24 22 20 28 28 C 1.32986 * 120.00083 * 180.02562 * 2 1 3 29 29 C 1.51414 * 136.31531 * 179.62640 * 28 2 1 30 30 C 1.53375 * 87.51800 * 206.06123 * 29 28 2 31 31 C 1.51408 * 136.32039 * 0.02562 * 28 2 1 32 32 H 1.09001 * 109.47377 * 95.19634 * 1 2 3 33 33 H 1.09001 * 109.47130 * 215.19865 * 1 2 3 34 34 H 1.09005 * 109.47447 * 335.19531 * 1 2 3 35 35 H 1.09009 * 110.40959 * 338.30461 * 6 5 3 36 36 H 1.08992 * 110.41213 * 100.62728 * 6 5 3 37 37 H 1.09002 * 110.40972 * 21.63938 * 11 5 3 38 38 H 1.09000 * 110.41035 * 259.19936 * 11 5 3 39 39 H 1.08998 * 109.45521 * 59.35734 * 14 12 9 40 40 H 1.09001 * 109.45061 * 179.28995 * 14 12 9 41 41 H 1.09002 * 109.32635 * 240.54100 * 15 14 12 42 42 H 1.09003 * 109.39524 * 120.78717 * 15 14 12 43 43 H 1.09000 * 110.00371 * 181.34319 * 18 16 7 44 44 H 1.08996 * 110.00330 * 60.04507 * 18 16 7 45 45 H 0.97003 * 120.00359 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.55699 * 320.64342 * 29 28 2 47 47 H 1.09001 * 113.55802 * 91.37393 * 29 28 2 48 48 H 1.09005 * 113.96761 * 220.29571 * 30 29 28 49 49 H 1.08995 * 113.71366 * 88.80783 * 30 29 28 50 50 H 1.09004 * 113.55842 * 268.62623 * 31 28 2 51 51 H 1.08996 * 113.55952 * 39.27867 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 2.2658 1.9626 -1.0022 5 7 2.8903 1.6781 1.1106 6 6 3.0825 0.9286 2.3740 7 6 2.9133 1.9934 3.4997 8 1 3.6032 1.8113 4.3237 9 6 3.2296 3.3337 2.8067 10 1 4.0669 3.8360 3.2913 11 6 3.5718 2.9725 1.3449 12 6 1.9786 4.2192 2.8182 13 1 2.1729 5.1610 2.3049 14 6 1.5616 4.4641 4.2731 15 6 1.2399 3.1248 4.9473 16 6 1.4537 1.9772 3.9576 17 1 1.2285 1.0234 4.4348 18 6 0.5297 2.1798 2.7473 19 7 0.8889 3.4808 2.1490 20 6 0.2508 3.9725 1.0416 21 1 0.6404 4.8437 0.5362 22 6 -0.8968 3.3510 0.5687 23 7 -1.5027 2.4415 1.3024 24 14 -1.5815 3.8056 -1.1088 25 1 -0.9790 2.9275 -2.1438 26 1 -3.0558 3.6282 -1.1063 27 1 -1.2539 5.2224 -1.4098 28 6 2.1719 -1.1517 -0.0005 29 6 3.6251 -1.5770 -0.0075 30 6 3.1709 -2.8813 -0.6745 31 6 1.8139 -2.6228 -0.0016 32 1 -0.3634 -0.0931 -1.0234 33 1 -0.3633 -0.8398 0.5924 34 1 -0.3634 0.9329 0.4311 35 1 2.3281 0.1478 2.4714 36 1 4.0825 0.4966 2.4113 37 1 3.1872 3.7330 0.6654 38 1 4.6493 2.8623 1.2228 39 1 2.3768 4.9522 4.8072 40 1 0.6793 5.1038 4.2951 41 1 0.2014 3.1280 5.2787 42 1 1.8939 2.9866 5.8082 43 1 -0.5111 2.1929 3.0709 44 1 0.6842 1.3807 2.0224 45 1 -2.3049 2.0075 0.9721 46 1 4.2566 -0.9597 -0.6465 47 1 4.0421 -1.7196 0.9894 48 1 3.6836 -3.7695 -0.3050 49 1 3.1394 -2.8294 -1.7628 50 1 1.7337 -3.0525 0.9969 51 1 0.9597 -2.8628 -0.6347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087357013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:12 Heat of formation + Delta-G solvation = 46.811349 kcal Electronic energy + Delta-G solvation = -32225.471880 eV Core-core repulsion = 28512.763095 eV Total energy + Delta-G solvation = -3712.708785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60655 -38.89482 -37.61443 -35.20031 -33.36927 -32.56549 -31.40438 -29.98614 -29.71674 -27.04669 -26.08792 -25.38294 -25.12355 -24.15237 -22.05450 -21.82613 -20.97509 -20.46198 -19.53640 -17.54993 -17.10597 -16.20313 -15.93089 -15.85038 -15.30435 -15.08572 -14.80386 -14.53137 -14.09758 -13.96843 -13.02701 -12.89502 -12.66802 -12.43688 -12.36102 -12.17978 -12.14717 -12.00088 -11.83675 -11.62489 -11.49969 -11.43024 -11.24684 -11.17381 -11.11635 -10.88447 -10.66659 -10.58920 -10.49300 -10.40559 -10.12850 -10.09503 -9.73547 -9.56894 -9.25797 -9.17596 -9.00562 -8.43191 -8.24324 -7.89226 -6.65039 -5.54706 -2.96372 2.20019 3.42440 3.51882 3.55903 3.64155 3.81132 4.60998 4.63709 4.75371 4.84920 4.97703 5.06556 5.19381 5.22974 5.44407 5.52001 5.56484 5.67202 5.69311 5.72456 5.74353 5.76577 5.81142 5.85984 5.90385 5.92329 5.97835 6.04161 6.07339 6.09177 6.30389 6.32473 6.36099 6.40112 6.41951 6.46467 6.47648 6.52710 6.63162 6.68276 6.77157 6.79828 6.88634 7.02141 7.04803 7.15390 7.49077 7.63977 7.85071 7.97647 8.33007 8.42926 8.99145 9.33690 9.95098 10.48480 11.43597 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.007368 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.242485 B = 3799.345491 C = 5207.447465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C 0.601 3.399 4 O -0.538 6.538 5 N -0.593 5.593 6 C 0.110 3.890 7 C -0.085 4.085 8 H 0.073 0.927 9 C -0.114 4.114 10 H 0.073 0.927 11 C 0.127 3.873 12 C 0.175 3.825 13 H 0.065 0.935 14 C -0.127 4.127 15 C -0.098 4.098 16 C -0.109 4.109 17 H 0.061 0.939 18 C 0.177 3.823 19 N -0.586 5.586 20 C -0.207 4.207 21 H 0.067 0.933 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.892 3.108 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.285 1.285 28 C -0.161 4.161 29 C -0.101 4.101 30 C -0.136 4.136 31 C -0.095 4.095 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.010 -7.599 5.819 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C 0.390 3.610 4 O -0.414 6.414 5 N -0.325 5.325 6 C -0.014 4.014 7 C -0.104 4.104 8 H 0.092 0.908 9 C -0.135 4.135 10 H 0.091 0.909 11 C 0.004 3.996 12 C 0.067 3.933 13 H 0.084 0.916 14 C -0.166 4.166 15 C -0.136 4.136 16 C -0.128 4.128 17 H 0.079 0.921 18 C 0.053 3.947 19 N -0.308 5.308 20 C -0.336 4.336 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.723 3.277 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.210 1.210 28 C -0.162 4.162 29 C -0.138 4.138 30 C -0.174 4.174 31 C -0.132 4.132 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.108 0.892 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.782 -7.321 5.062 13.225 hybrid contribution -0.378 0.139 -0.838 0.930 sum 9.405 -7.182 4.224 12.565 Atomic orbital electron populations 1.21292 0.88667 1.07780 1.01618 1.20668 0.97102 0.90654 1.00830 1.17575 0.76708 0.85090 0.81615 1.90755 1.61732 1.56252 1.32711 1.48405 1.53994 1.16931 1.13194 1.22584 0.99743 0.95140 0.83926 1.22288 0.97436 0.94512 0.96209 0.90847 1.22756 0.99317 0.96836 0.94622 0.90886 1.22074 0.94195 0.86804 0.96527 1.20628 0.87722 0.93494 0.91476 0.91647 1.22084 1.00131 0.96770 0.97645 1.21384 1.00370 0.95210 0.96640 1.21785 0.94781 0.97326 0.98898 0.92098 1.21539 0.96350 0.86943 0.89871 1.44455 1.37502 1.17933 1.30945 1.19162 1.03932 1.09921 1.00547 0.91477 1.24555 0.97174 0.99933 0.98312 1.69916 1.20278 1.30815 1.35623 0.86402 0.77522 0.78208 0.85585 1.21097 1.22173 1.21031 1.22796 0.96687 0.93839 1.02848 1.22058 0.94342 0.96639 1.00802 1.22609 0.97253 0.97342 1.00148 1.22034 0.97647 0.92590 1.00880 0.92648 0.92475 0.84427 0.90630 0.92691 0.89840 0.93285 0.93717 0.92297 0.92656 0.93885 0.90494 0.94192 0.94070 0.91586 0.89365 0.91118 0.90148 0.89184 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.38 36.00 0.34 -2.54 16 2 C -0.09 -1.78 4.13 -102.85 -0.43 -2.21 16 3 C 0.60 13.28 6.41 -12.66 -0.08 13.20 16 4 O -0.54 -14.17 17.42 5.26 0.09 -14.08 16 5 N -0.59 -11.23 1.98 -169.73 -0.34 -11.57 16 6 C 0.11 1.71 5.50 -1.60 -0.01 1.70 16 7 C -0.09 -1.29 3.29 -88.48 -0.29 -1.58 16 8 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 9 C -0.11 -1.83 3.17 -89.12 -0.28 -2.11 16 10 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.13 2.26 6.14 -2.39 -0.01 2.25 16 12 C 0.18 3.31 2.89 -66.98 -0.19 3.12 16 13 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 14 C -0.13 -2.15 5.87 -26.38 -0.15 -2.30 16 15 C -0.10 -1.60 5.65 -26.53 -0.15 -1.75 16 16 C -0.11 -1.87 2.69 -90.29 -0.24 -2.12 16 17 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 18 C 0.18 3.86 3.79 -3.10 -0.01 3.85 16 19 N -0.59 -13.33 2.02 -163.15 -0.33 -13.66 16 20 C -0.21 -5.47 9.93 -15.06 -0.15 -5.62 16 21 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 22 C -0.01 -0.16 4.56 -17.43 -0.08 -0.24 16 23 N -0.92 -24.62 8.02 55.49 0.44 -24.17 16 24 Si 0.89 22.99 29.57 -169.99 -5.03 17.97 16 25 H -0.28 -7.69 7.11 56.52 0.40 -7.28 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 C -0.16 -2.59 6.18 -100.48 -0.62 -3.21 16 29 C -0.10 -1.34 7.83 -27.55 -0.22 -1.56 16 30 C -0.14 -1.54 8.17 -26.21 -0.21 -1.76 16 31 C -0.09 -1.20 7.82 -27.41 -0.21 -1.41 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.05 8.05 -51.93 -0.42 0.64 16 34 H 0.14 3.33 3.35 -51.93 -0.17 3.16 16 35 H 0.08 1.23 6.33 -51.92 -0.33 0.90 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.75 7.62 -51.93 -0.40 1.36 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.97 6.37 -51.93 -0.33 1.64 16 44 H 0.04 0.91 2.75 -51.93 -0.14 0.77 16 45 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -29.88 372.61 -11.07 -40.94 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.52 Total: 3.24 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.01 Total: -4.28 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.22 Total: -49.40 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.88 -11.07 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.755 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds