Wall clock time and date at job start Tue Mar 31 2020 16:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47107 * 119.99617 * 2 1 4 4 O 1.21615 * 119.99959 * 287.91556 * 3 2 1 5 5 N 1.34776 * 119.99712 * 107.91744 * 3 2 1 6 6 C 1.48149 * 127.83819 * 6.19508 * 5 3 2 7 7 C 1.55872 * 104.84282 * 219.32009 * 6 5 3 8 8 H 1.09004 * 111.29190 * 217.10397 * 7 6 5 9 9 C 1.54165 * 104.30134 * 336.62576 * 7 6 5 10 10 H 1.09004 * 111.00133 * 239.14670 * 9 7 6 11 11 C 1.48148 * 127.83290 * 186.19162 * 5 3 2 12 12 C 1.53277 * 109.35585 * 116.42175 * 9 7 6 13 13 H 1.09002 * 110.49677 * 181.73981 * 12 9 7 14 14 C 1.53321 * 108.74552 * 59.75416 * 12 9 7 15 15 C 1.53350 * 109.55747 * 299.36804 * 14 12 9 16 16 C 1.52987 * 108.21171 * 93.54360 * 7 6 5 17 17 H 1.09002 * 109.71927 * 65.93636 * 16 7 6 18 18 C 1.53607 * 109.67504 * 305.45580 * 16 7 6 19 19 N 1.47641 * 106.80690 * 300.69286 * 18 16 7 20 20 C 1.36937 * 122.05660 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00138 * 189.92851 * 20 19 18 22 22 C 1.38810 * 120.00080 * 9.93392 * 20 19 18 23 23 N 1.31626 * 120.00034 * 11.71882 * 22 20 19 24 24 Si 1.86799 * 120.00358 * 191.71686 * 22 20 19 25 25 H 1.48499 * 109.46916 * 90.00104 * 24 22 20 26 26 H 1.48491 * 109.47512 * 210.00208 * 24 22 20 27 27 H 1.48501 * 109.46857 * 330.00355 * 24 22 20 28 28 C 1.32986 * 120.00083 * 180.02562 * 2 1 3 29 29 C 1.51414 * 136.31531 * 179.62640 * 28 2 1 30 30 C 1.53375 * 87.51800 * 206.06123 * 29 28 2 31 31 C 1.51408 * 136.32039 * 0.02562 * 28 2 1 32 32 H 1.09001 * 109.47377 * 95.19634 * 1 2 3 33 33 H 1.09001 * 109.47130 * 215.19865 * 1 2 3 34 34 H 1.09005 * 109.47447 * 335.19531 * 1 2 3 35 35 H 1.09009 * 110.40959 * 338.30461 * 6 5 3 36 36 H 1.08992 * 110.41213 * 100.62728 * 6 5 3 37 37 H 1.09002 * 110.40972 * 21.63938 * 11 5 3 38 38 H 1.09000 * 110.41035 * 259.19936 * 11 5 3 39 39 H 1.08998 * 109.45521 * 59.35734 * 14 12 9 40 40 H 1.09001 * 109.45061 * 179.28995 * 14 12 9 41 41 H 1.09002 * 109.32635 * 240.54100 * 15 14 12 42 42 H 1.09003 * 109.39524 * 120.78717 * 15 14 12 43 43 H 1.09000 * 110.00371 * 181.34319 * 18 16 7 44 44 H 1.08996 * 110.00330 * 60.04507 * 18 16 7 45 45 H 0.97003 * 120.00359 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.55699 * 320.64342 * 29 28 2 47 47 H 1.09001 * 113.55802 * 91.37393 * 29 28 2 48 48 H 1.09005 * 113.96761 * 220.29571 * 30 29 28 49 49 H 1.08995 * 113.71366 * 88.80783 * 30 29 28 50 50 H 1.09004 * 113.55842 * 268.62623 * 31 28 2 51 51 H 1.08996 * 113.55952 * 39.27867 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 2.2658 1.9626 -1.0022 5 7 2.8903 1.6781 1.1106 6 6 3.0825 0.9286 2.3740 7 6 2.9133 1.9934 3.4997 8 1 3.6032 1.8113 4.3237 9 6 3.2296 3.3337 2.8067 10 1 4.0669 3.8360 3.2913 11 6 3.5718 2.9725 1.3449 12 6 1.9786 4.2192 2.8182 13 1 2.1729 5.1610 2.3049 14 6 1.5616 4.4641 4.2731 15 6 1.2399 3.1248 4.9473 16 6 1.4537 1.9772 3.9576 17 1 1.2285 1.0234 4.4348 18 6 0.5297 2.1798 2.7473 19 7 0.8889 3.4808 2.1490 20 6 0.2508 3.9725 1.0416 21 1 0.6404 4.8437 0.5362 22 6 -0.8968 3.3510 0.5687 23 7 -1.5027 2.4415 1.3024 24 14 -1.5815 3.8056 -1.1088 25 1 -0.9790 2.9275 -2.1438 26 1 -3.0558 3.6282 -1.1063 27 1 -1.2539 5.2224 -1.4098 28 6 2.1719 -1.1517 -0.0005 29 6 3.6251 -1.5770 -0.0075 30 6 3.1709 -2.8813 -0.6745 31 6 1.8139 -2.6228 -0.0016 32 1 -0.3634 -0.0931 -1.0234 33 1 -0.3633 -0.8398 0.5924 34 1 -0.3634 0.9329 0.4311 35 1 2.3281 0.1478 2.4714 36 1 4.0825 0.4966 2.4113 37 1 3.1872 3.7330 0.6654 38 1 4.6493 2.8623 1.2228 39 1 2.3768 4.9522 4.8072 40 1 0.6793 5.1038 4.2951 41 1 0.2014 3.1280 5.2787 42 1 1.8939 2.9866 5.8082 43 1 -0.5111 2.1929 3.0709 44 1 0.6842 1.3807 2.0224 45 1 -2.3049 2.0075 0.9721 46 1 4.2566 -0.9597 -0.6465 47 1 4.0421 -1.7196 0.9894 48 1 3.6836 -3.7695 -0.3050 49 1 3.1394 -2.8294 -1.7628 50 1 1.7337 -3.0525 0.9969 51 1 0.9597 -2.8628 -0.6347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087357013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:11 Heat of formation + Delta-G solvation = 31.631020 kcal Electronic energy + Delta-G solvation = -32226.130148 eV Core-core repulsion = 28512.763095 eV Total energy + Delta-G solvation = -3713.367053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03342 -40.22671 -39.01685 -36.76573 -35.18568 -34.01592 -32.90363 -31.65712 -31.24573 -28.45186 -27.41742 -27.10802 -26.32726 -25.56343 -23.64050 -23.26538 -22.37548 -21.75800 -20.88302 -19.20857 -18.65942 -17.58231 -17.35871 -17.26263 -16.79823 -16.45791 -16.27550 -16.08632 -15.90814 -15.46863 -14.48770 -14.38402 -14.25194 -14.12355 -13.82014 -13.62867 -13.40959 -13.32691 -13.26240 -13.12650 -12.95277 -12.88673 -12.78381 -12.56169 -12.51487 -12.47387 -12.35780 -12.16859 -12.11486 -11.85355 -11.79319 -11.57827 -11.31156 -11.04976 -10.74580 -10.62357 -10.56982 -10.37208 -9.62634 -9.36746 -8.55375 -7.61874 -5.00560 0.85567 1.31934 1.38494 1.45414 1.83929 2.39712 2.52869 3.39490 3.44921 3.60975 3.68229 3.72017 3.82426 3.87938 3.98259 4.18954 4.28245 4.36557 4.41594 4.46752 4.50421 4.55345 4.58592 4.70677 4.74380 4.76163 4.77462 4.79911 4.81750 4.88066 4.96272 5.00726 5.03217 5.05367 5.09622 5.10154 5.11742 5.23878 5.33448 5.36339 5.42316 5.45403 5.50452 5.57946 5.60768 5.69095 5.82995 5.93216 6.04638 6.11859 6.45198 6.84041 7.31730 7.41615 8.03640 8.49883 9.30733 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.007368 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.242485 B = 3799.345491 C = 5207.447465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.142 4.142 3 C 0.595 3.405 4 O -0.605 6.605 5 N -0.592 5.592 6 C 0.106 3.894 7 C -0.074 4.074 8 H 0.126 0.874 9 C -0.101 4.101 10 H 0.118 0.882 11 C 0.120 3.880 12 C 0.161 3.839 13 H 0.047 0.953 14 C -0.119 4.119 15 C -0.094 4.094 16 C -0.105 4.105 17 H 0.079 0.921 18 C 0.180 3.820 19 N -0.594 5.594 20 C -0.203 4.203 21 H 0.045 0.955 22 C -0.036 4.036 23 N -0.915 5.915 24 Si 0.916 3.084 25 H -0.310 1.310 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.139 4.139 29 C -0.100 4.100 30 C -0.123 4.123 31 C -0.094 4.094 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.240 0.760 46 H 0.052 0.948 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.779 -10.183 9.390 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.145 4.145 3 C 0.386 3.614 4 O -0.488 6.488 5 N -0.323 5.323 6 C -0.017 4.017 7 C -0.093 4.093 8 H 0.143 0.857 9 C -0.122 4.122 10 H 0.136 0.864 11 C -0.003 4.003 12 C 0.054 3.946 13 H 0.065 0.935 14 C -0.159 4.159 15 C -0.131 4.131 16 C -0.124 4.124 17 H 0.097 0.903 18 C 0.056 3.944 19 N -0.317 5.317 20 C -0.334 4.334 21 H 0.063 0.937 22 C -0.230 4.230 23 N -0.567 5.567 24 Si 0.749 3.251 25 H -0.239 1.239 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.140 4.140 29 C -0.137 4.137 30 C -0.160 4.160 31 C -0.131 4.131 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.137 0.863 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.136 0.864 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.577 -9.896 8.711 18.925 hybrid contribution -1.484 0.932 -1.977 2.642 sum 12.093 -8.965 6.734 16.491 Atomic orbital electron populations 1.21057 0.90479 1.06719 1.00318 1.20327 0.96069 0.91182 1.06894 1.17993 0.76498 0.85427 0.81532 1.90693 1.64274 1.58469 1.35325 1.48519 1.52659 1.17599 1.13497 1.22884 1.01661 0.94990 0.82126 1.22364 0.96522 0.93192 0.97212 0.85660 1.22699 0.98715 0.97122 0.93652 0.86403 1.22227 0.95638 0.85447 0.96978 1.20932 0.88141 0.93279 0.92265 0.93483 1.21983 1.00221 0.97324 0.96339 1.21370 1.00240 0.94000 0.97528 1.21711 0.95350 0.98627 0.96737 0.90315 1.21275 0.95412 0.86077 0.91641 1.44545 1.38183 1.18824 1.30136 1.19113 1.03586 1.08926 1.01745 0.93740 1.24775 0.98111 1.00882 0.99184 1.70053 1.20113 1.31128 1.35418 0.86004 0.77285 0.77302 0.84464 1.23896 1.21642 1.21083 1.23442 0.99253 0.94421 0.96918 1.22262 0.91926 0.97052 1.02477 1.22579 0.95990 0.97677 0.99732 1.22253 0.98592 0.89643 1.02612 0.94739 0.90767 0.87533 0.91275 0.88727 0.94536 0.90014 0.89830 0.95237 0.94720 0.89650 0.95143 0.95267 0.94910 0.92936 0.86255 0.87548 0.90786 0.86385 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 9.38 71.24 0.67 -5.06 16 2 C -0.14 -5.78 4.13 -18.70 -0.08 -5.86 16 3 C 0.59 27.26 6.41 86.57 0.55 27.82 16 4 O -0.61 -34.31 17.42 -4.08 -0.07 -34.38 16 5 N -0.59 -21.97 1.98 -809.16 -1.60 -23.57 16 6 C 0.11 2.85 5.50 87.06 0.48 3.32 16 7 C -0.07 -1.83 3.29 -9.41 -0.03 -1.86 16 8 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 9 C -0.10 -2.86 3.17 -9.82 -0.03 -2.89 16 10 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 11 C 0.12 4.12 6.14 86.54 0.53 4.65 16 12 C 0.16 5.95 2.89 44.97 0.13 6.07 16 13 H 0.05 1.87 8.01 -2.39 -0.02 1.86 16 14 C -0.12 -3.76 5.87 30.82 0.18 -3.58 16 15 C -0.09 -2.72 5.65 30.72 0.17 -2.54 16 16 C -0.11 -3.28 2.69 -10.58 -0.03 -3.31 16 17 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.18 7.96 3.79 86.36 0.33 8.29 16 19 N -0.59 -27.91 2.02 -670.10 -1.35 -29.26 16 20 C -0.20 -11.47 9.93 84.03 0.83 -10.63 16 21 H 0.04 2.65 7.84 -2.91 -0.02 2.63 16 22 C -0.04 -2.11 4.56 84.86 0.39 -1.72 16 23 N -0.92 -52.36 8.02 21.65 0.17 -52.18 16 24 Si 0.92 50.37 29.57 68.60 2.03 52.40 16 25 H -0.31 -18.23 7.11 99.48 0.71 -17.52 16 26 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 27 H -0.28 -15.45 7.11 99.48 0.71 -14.74 16 28 C -0.14 -4.27 6.18 -17.17 -0.11 -4.38 16 29 C -0.10 -2.29 7.83 30.06 0.24 -2.06 16 30 C -0.12 -2.28 8.17 30.93 0.25 -2.02 16 31 C -0.09 -2.08 7.82 30.15 0.24 -1.85 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.85 8.05 -2.39 -0.02 2.83 16 34 H 0.11 5.52 3.35 -2.38 -0.01 5.51 16 35 H 0.07 2.00 6.33 -2.38 -0.02 1.98 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.59 7.62 -2.39 -0.02 1.57 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.03 1.63 6.37 -2.39 -0.02 1.61 16 44 H 0.03 1.37 2.75 -2.39 -0.01 1.36 16 45 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 51 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.11 372.61 4.81 -71.30 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.91 Total: 13.30 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.72 Total: 2.40 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -2.78 Total: -105.01 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.07 Total: -34.38 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.03 Total: 52.40 kcal Total: -76.11 4.81 -71.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.929 kcal (2) G-P(sol) polarization free energy of solvation -76.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds