Wall clock time and date at job start Tue Mar 31 2020 16:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47104 * 120.00021 * 2 1 4 4 O 1.21612 * 120.00060 * 78.50672 * 3 2 1 5 5 N 1.34775 * 119.99915 * 258.50258 * 3 2 1 6 6 C 1.48688 * 125.74787 * 4.69849 * 5 3 2 7 7 C 1.53282 * 106.01309 * 186.83135 * 6 5 3 8 8 H 1.09003 * 112.73189 * 89.10019 * 7 6 5 9 9 C 1.55801 * 98.70046 * 329.53429 * 7 6 5 10 10 H 1.09004 * 98.52662 * 299.62546 * 9 7 6 11 11 C 1.47997 * 103.80853 * 44.85439 * 9 7 6 12 12 C 1.48366 * 109.48895 * 192.66437 * 9 7 6 13 13 H 1.08995 * 114.42902 * 211.06052 * 12 9 7 14 14 C 1.57088 * 102.61804 * 85.29737 * 12 9 7 15 15 C 1.55272 * 106.31279 * 325.72495 * 14 12 9 16 16 C 1.54218 * 109.05982 * 324.14358 * 15 14 12 17 17 H 1.08998 * 112.84111 * 200.59183 * 16 15 14 18 18 C 1.55839 * 104.80701 * 324.03529 * 16 15 14 19 19 N 1.48318 * 105.67210 * 74.09474 * 18 16 15 20 20 C 1.36935 * 122.60458 * 147.69714 * 19 18 16 21 21 H 1.07990 * 120.00356 * 202.37827 * 20 19 18 22 22 C 1.38818 * 119.99742 * 22.37948 * 20 19 18 23 23 N 1.31623 * 119.99853 * 8.89842 * 22 20 19 24 24 Si 1.86797 * 119.99795 * 188.90108 * 22 20 19 25 25 H 1.48493 * 109.47442 * 60.00054 * 24 22 20 26 26 H 1.48506 * 109.46925 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46947 * 299.99561 * 24 22 20 28 28 C 1.32995 * 119.99963 * 180.02562 * 2 1 3 29 29 C 1.51405 * 136.31485 * 179.63383 * 28 2 1 30 30 C 1.53376 * 87.51713 * 206.05180 * 29 28 2 31 31 C 1.51410 * 136.31828 * 359.97438 * 28 2 1 32 32 H 1.08994 * 109.47311 * 85.17946 * 1 2 3 33 33 H 1.09006 * 109.47249 * 205.18262 * 1 2 3 34 34 H 1.09002 * 109.46802 * 325.17878 * 1 2 3 35 35 H 1.09001 * 110.15227 * 306.09221 * 6 5 3 36 36 H 1.09009 * 110.14611 * 67.83468 * 6 5 3 37 37 H 1.09002 * 110.86163 * 200.21341 * 11 9 7 38 38 H 1.08997 * 110.86482 * 76.54977 * 11 9 7 39 39 H 1.09001 * 110.18716 * 85.26182 * 14 12 9 40 40 H 1.09001 * 110.18348 * 207.14594 * 14 12 9 41 41 H 1.08996 * 110.74098 * 203.66619 * 15 14 12 42 42 H 1.09001 * 108.72615 * 83.40061 * 15 14 12 43 43 H 1.08999 * 110.20484 * 315.05404 * 18 16 15 44 44 H 1.09000 * 110.31023 * 193.18559 * 18 16 15 45 45 H 0.96997 * 119.99454 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.56173 * 320.63128 * 29 28 2 47 47 H 1.09000 * 113.56364 * 91.37191 * 29 28 2 48 48 H 1.08999 * 113.97426 * 220.29066 * 30 29 28 49 49 H 1.09003 * 113.71327 * 88.80632 * 30 29 28 50 50 H 1.08997 * 113.56278 * 268.63134 * 31 28 2 51 51 H 1.09003 * 113.55638 * 39.36649 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3648 1.9055 1.0321 5 7 2.7809 1.7412 -1.1438 6 6 2.6270 1.1288 -2.4899 7 6 3.5556 1.9162 -3.4213 8 1 4.5632 1.5024 -3.4598 9 6 3.4909 3.2984 -2.7051 10 1 2.4194 3.4772 -2.7954 11 6 3.6403 2.9609 -1.2719 12 6 4.0748 4.3399 -3.5857 13 1 4.5577 5.1603 -3.0547 14 6 2.8567 4.7471 -4.4901 15 6 2.0233 3.4550 -4.7069 16 6 2.9805 2.2506 -4.8146 17 1 2.5265 1.3924 -5.3100 18 6 4.2292 2.8003 -5.5676 19 7 4.9530 3.6408 -4.5829 20 6 6.3163 3.7695 -4.5834 21 1 6.8306 4.0706 -3.6829 22 6 7.0371 3.5131 -5.7417 23 7 6.4059 3.3183 -6.8802 24 14 8.9030 3.4445 -5.6846 25 1 9.3306 2.3718 -4.7511 26 1 9.4295 3.1568 -7.0431 27 1 9.4321 4.7500 -5.2144 28 6 2.1719 -1.1518 -0.0005 29 6 3.6250 -1.5771 -0.0074 30 6 3.1708 -2.8815 -0.6743 31 6 1.8138 -2.6229 -0.0007 32 1 -0.3633 0.0864 -1.0240 33 1 -0.3634 -0.9300 0.4373 34 1 -0.3633 0.8437 0.5868 35 1 2.9225 0.0800 -2.4614 36 1 1.5947 1.2197 -2.8280 37 1 3.2656 3.7678 -0.6420 38 1 4.6787 2.7310 -1.0334 39 1 2.2547 5.5063 -3.9908 40 1 3.2100 5.1181 -5.4522 41 1 1.4282 3.5277 -5.6171 42 1 1.3622 3.3173 -3.8513 43 1 3.9190 3.4031 -6.4210 44 1 4.8635 1.9781 -5.8989 45 1 6.9096 3.1387 -7.6894 46 1 4.2566 -0.9599 -0.6464 47 1 4.0420 -1.7197 0.9895 48 1 3.6834 -3.7696 -0.3048 49 1 3.1394 -2.8296 -1.7626 50 1 1.7343 -3.0521 0.9980 51 1 0.9599 -2.8633 -0.6342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087357014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:15 Heat of formation + Delta-G solvation = 81.365201 kcal Electronic energy + Delta-G solvation = -30253.478586 eV Core-core repulsion = 26542.268169 eV Total energy + Delta-G solvation = -3711.210417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19889 -39.56566 -38.26255 -35.90158 -33.29135 -33.05074 -31.12891 -30.09707 -29.83669 -27.55890 -26.75891 -25.68693 -25.43078 -24.16233 -22.44126 -21.86706 -20.82655 -20.52773 -19.88385 -17.79655 -17.36600 -16.81282 -16.46198 -16.06812 -15.57729 -15.37654 -15.09800 -14.71165 -14.25207 -14.20566 -13.71993 -13.32482 -13.22554 -12.88505 -12.81094 -12.64277 -12.48082 -12.26580 -12.22018 -12.08142 -11.78819 -11.69720 -11.32990 -11.20222 -11.09692 -11.02882 -10.90857 -10.80383 -10.65664 -10.54233 -10.30703 -10.17503 -10.09028 -9.73629 -9.54306 -9.23549 -8.91777 -8.89002 -8.52697 -8.46195 -6.73801 -5.75733 -3.14384 1.64636 2.73058 3.09551 3.38914 3.44364 3.45098 4.16807 4.34092 4.45819 4.52213 4.67462 4.86258 4.89312 4.93495 5.17202 5.23019 5.31490 5.39543 5.43970 5.44734 5.45242 5.46813 5.52984 5.58258 5.61811 5.63299 5.67617 5.72806 5.75138 5.83815 5.90537 5.98558 6.04865 6.07686 6.10441 6.19569 6.21277 6.26990 6.41327 6.47280 6.54607 6.60826 6.63313 6.65204 6.93800 6.96810 7.11095 7.38993 7.62098 7.67689 7.79598 8.26386 8.30651 9.18881 9.78936 10.43675 11.34404 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003814 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.205099 B = 7340.243052 C = 8081.451909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.135 4.135 3 C 0.576 3.424 4 O -0.547 6.547 5 N -0.615 5.615 6 C 0.107 3.893 7 C -0.076 4.076 8 H 0.100 0.900 9 C -0.155 4.155 10 H 0.063 0.937 11 C 0.140 3.860 12 C 0.192 3.808 13 H 0.084 0.916 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.116 4.116 17 H 0.075 0.925 18 C 0.194 3.806 19 N -0.596 5.596 20 C -0.240 4.240 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.914 5.914 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.284 1.284 28 C -0.120 4.120 29 C -0.110 4.110 30 C -0.136 4.136 31 C -0.099 4.099 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.065 0.935 45 H 0.253 0.747 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 -9.489 8.689 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.365 3.635 4 O -0.426 6.426 5 N -0.348 5.348 6 C -0.015 4.015 7 C -0.095 4.095 8 H 0.118 0.882 9 C -0.176 4.176 10 H 0.081 0.919 11 C 0.019 3.981 12 C 0.085 3.915 13 H 0.102 0.898 14 C -0.169 4.169 15 C -0.147 4.147 16 C -0.136 4.136 17 H 0.093 0.907 18 C 0.069 3.931 19 N -0.320 5.320 20 C -0.369 4.369 21 H 0.085 0.915 22 C -0.197 4.197 23 N -0.560 5.560 24 Si 0.734 3.266 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.211 1.211 28 C -0.120 4.120 29 C -0.147 4.147 30 C -0.173 4.173 31 C -0.135 4.135 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.732 -9.216 9.099 17.474 hybrid contribution 0.965 -0.110 -0.134 0.980 sum -10.767 -9.326 8.965 16.830 Atomic orbital electron populations 1.20545 0.89509 1.02984 1.02318 1.20390 0.96303 0.91018 1.06053 1.17972 0.78345 0.84850 0.82369 1.90787 1.60871 1.59213 1.31683 1.49723 1.50074 1.27811 1.07227 1.22156 1.00095 0.97191 0.82075 1.22540 0.98715 0.94639 0.93612 0.88170 1.21851 1.04099 0.98477 0.93180 0.91854 1.20747 0.94204 0.86466 0.96681 1.20751 0.89945 0.91829 0.88994 0.89834 1.23408 0.96492 0.95925 1.01077 1.22218 0.97285 0.95510 0.99690 1.22843 0.98422 0.96511 0.95808 0.90717 1.21525 0.88444 0.93726 0.89391 1.45497 1.01813 1.51411 1.33267 1.19114 0.81576 1.41624 0.94621 0.91456 1.24962 0.97700 1.02023 0.95042 1.69943 1.33903 1.53779 0.98329 0.86351 0.85800 0.77972 0.76504 1.21244 1.21744 1.21071 1.22998 0.97631 0.93697 0.97722 1.22183 0.93875 0.96981 1.01618 1.22637 0.96561 0.97603 1.00492 1.22168 0.98322 0.91696 1.01358 0.91177 0.91235 0.91260 0.91748 0.91877 0.90714 0.91495 0.93316 0.90681 0.92560 0.93090 0.94946 0.91663 0.93725 0.90610 0.88796 0.90598 0.89555 0.88826 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.13 -1.74 4.94 -102.85 -0.51 -2.25 16 3 C 0.58 9.35 7.17 -12.66 -0.09 9.26 16 4 O -0.55 -10.79 17.44 5.27 0.09 -10.70 16 5 N -0.61 -9.55 3.38 -173.24 -0.59 -10.14 16 6 C 0.11 1.51 5.87 -2.69 -0.02 1.49 16 7 C -0.08 -1.26 2.81 -88.25 -0.25 -1.51 16 8 H 0.10 1.96 7.68 -51.93 -0.40 1.56 16 9 C -0.16 -2.60 2.72 -93.81 -0.26 -2.85 16 10 H 0.06 1.03 3.65 -51.93 -0.19 0.84 16 11 C 0.14 2.29 6.80 -4.65 -0.03 2.26 16 12 C 0.19 3.65 4.70 -65.93 -0.31 3.34 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 14 C -0.13 -2.24 5.58 -23.31 -0.13 -2.37 16 15 C -0.11 -1.70 5.43 -24.89 -0.14 -1.84 16 16 C -0.12 -1.95 3.83 -87.74 -0.34 -2.29 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.19 4.24 3.89 -1.52 -0.01 4.23 16 19 N -0.60 -13.66 2.23 -159.67 -0.36 -14.01 16 20 C -0.24 -6.25 10.00 -15.06 -0.15 -6.40 16 21 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 22 C 0.00 0.01 5.25 -17.43 -0.09 -0.08 16 23 N -0.91 -25.51 10.85 55.49 0.60 -24.91 16 24 Si 0.90 21.39 29.56 -169.99 -5.03 16.37 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.12 -1.36 6.44 -100.48 -0.65 -2.01 16 29 C -0.11 -1.19 7.83 -27.56 -0.22 -1.41 16 30 C -0.14 -1.16 8.17 -26.19 -0.21 -1.37 16 31 C -0.10 -0.82 7.63 -27.39 -0.21 -1.03 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 36 H 0.06 0.83 7.79 -51.92 -0.40 0.43 16 37 H 0.07 1.22 8.11 -51.93 -0.42 0.79 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.48 7.24 -51.93 -0.38 1.10 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.74 6.17 -51.93 -0.32 0.42 16 43 H 0.03 0.79 7.14 -51.93 -0.37 0.42 16 44 H 0.07 1.62 7.01 -51.93 -0.36 1.26 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -29.72 386.31 -11.39 -41.11 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.70 Total: 1.89 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -3.23 Total: -5.43 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.34 Total: -49.06 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.72 -11.39 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.474 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds