Wall clock time and date at job start Tue Mar 31 2020 16:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.47101 * 120.00247 * 2 1 4 4 O 1.21619 * 120.00184 * 172.59655 * 3 2 1 5 5 N 1.34772 * 119.99723 * 352.58689 * 3 2 1 6 6 C 1.48168 * 127.83595 * 174.32582 * 5 3 2 7 7 C 1.54371 * 104.56304 * 140.32787 * 6 5 3 8 8 H 1.09004 * 110.94292 * 263.57077 * 7 6 5 9 9 C 1.54165 * 105.00929 * 24.09116 * 7 6 5 10 10 H 1.08997 * 110.87100 * 239.92044 * 9 7 6 11 11 C 1.48143 * 127.83795 * 354.28249 * 5 3 2 12 12 C 1.53024 * 109.71809 * 116.60874 * 9 7 6 13 13 H 1.09000 * 109.63094 * 179.80120 * 12 9 7 14 14 C 1.53038 * 109.19649 * 300.53382 * 12 9 7 15 15 C 1.52932 * 110.00598 * 59.23778 * 14 12 9 16 16 C 1.53229 * 108.97404 * 141.21633 * 7 6 5 17 17 H 1.08996 * 110.49130 * 67.91861 * 16 7 6 18 18 N 1.47686 * 108.04932 * 188.92038 * 16 7 6 19 19 C 1.36935 * 122.07596 * 238.64776 * 18 16 7 20 20 H 1.08004 * 119.99929 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00250 * 180.27933 * 19 18 16 22 22 N 1.31627 * 119.99541 * 359.71331 * 21 19 18 23 23 Si 1.86800 * 120.00303 * 179.72260 * 21 19 18 24 24 H 1.48498 * 109.47072 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47020 * 119.99514 * 23 21 19 26 26 H 1.48503 * 109.46801 * 239.99525 * 23 21 19 27 27 C 1.47644 * 115.84999 * 58.91104 * 18 16 7 28 28 C 1.32993 * 120.00058 * 179.97438 * 2 1 3 29 29 C 1.51409 * 136.31949 * 179.63078 * 28 2 1 30 30 C 1.53378 * 87.51864 * 206.06196 * 29 28 2 31 31 C 1.51402 * 136.31579 * 0.02562 * 28 2 1 32 32 H 1.09001 * 109.47364 * 84.90431 * 1 2 3 33 33 H 1.09005 * 109.47520 * 204.90636 * 1 2 3 34 34 H 1.09005 * 109.47375 * 324.90656 * 1 2 3 35 35 H 1.09002 * 110.41689 * 21.55702 * 6 5 3 36 36 H 1.09003 * 110.51777 * 259.14854 * 6 5 3 37 37 H 1.08997 * 110.40035 * 338.28885 * 11 5 3 38 38 H 1.08998 * 110.40007 * 100.70897 * 11 5 3 39 39 H 1.09002 * 109.38395 * 179.40027 * 14 12 9 40 40 H 1.09007 * 109.38454 * 299.18195 * 14 12 9 41 41 H 1.09001 * 109.45173 * 240.82861 * 15 14 12 42 42 H 1.09003 * 109.45516 * 120.89747 * 15 14 12 43 43 H 0.96999 * 119.99616 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.99560 * 119.41076 * 27 18 16 45 45 H 1.09000 * 109.99125 * 240.78985 * 27 18 16 46 46 H 1.09000 * 113.55688 * 320.63850 * 29 28 2 47 47 H 1.08994 * 113.56108 * 91.37322 * 29 28 2 48 48 H 1.09001 * 113.96628 * 220.29157 * 30 29 28 49 49 H 1.09003 * 113.70922 * 88.80482 * 30 29 28 50 50 H 1.09003 * 113.56141 * 268.61937 * 31 28 2 51 51 H 1.08998 * 113.56313 * 39.35111 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4510 1.2783 0.1357 5 7 1.5770 2.4362 -0.1506 6 6 2.1196 3.8121 -0.0623 7 6 1.4031 4.5850 -1.1902 8 1 2.0195 4.6239 -2.0884 9 6 0.0947 3.8081 -1.4379 10 1 0.0454 3.4482 -2.4655 11 6 0.1374 2.6279 -0.4428 12 6 -1.1049 4.6970 -1.1026 13 1 -2.0291 4.1476 -1.2815 14 6 -1.0211 5.1229 0.3649 15 6 0.2804 5.8862 0.6147 16 6 1.0711 5.9963 -0.6942 17 1 1.9837 6.5747 -0.5505 18 7 0.2022 6.6418 -1.6988 19 6 0.5529 7.8106 -2.3202 20 1 1.4907 8.2896 -2.0800 21 6 -0.2996 8.3832 -3.2541 22 7 -1.4426 7.7997 -3.5465 23 14 0.1754 9.9817 -4.0960 24 1 1.4994 10.4304 -3.5953 25 1 0.2479 9.7657 -5.5634 26 1 -0.8439 11.0198 -3.7981 27 6 -1.0709 5.9520 -1.9873 28 6 2.1719 -1.1517 0.0005 29 6 3.6250 -1.5772 -0.0060 30 6 3.1707 -2.8821 -0.6719 31 6 1.8137 -2.6228 0.0007 32 1 -0.3634 0.0913 -1.0236 33 1 -0.3634 -0.9321 0.4328 34 1 -0.3634 0.8409 0.5908 35 1 3.1968 3.8076 -0.2292 36 1 1.8877 4.2528 0.9074 37 1 -0.2803 1.7306 -0.8994 38 1 -0.4050 2.8795 0.4685 39 1 -1.8687 5.7651 0.6043 40 1 -1.0471 4.2377 1.0006 41 1 0.8770 5.3539 1.3555 42 1 0.0500 6.8853 0.9846 43 1 -2.0382 8.1996 -4.1994 44 1 -1.9108 6.6036 -1.7464 45 1 -1.1096 5.6653 -3.0382 46 1 4.2566 -0.9605 -0.6455 47 1 4.0419 -1.7189 0.9910 48 1 3.6834 -3.7699 -0.3017 49 1 3.1393 -2.8309 -1.7603 50 1 1.7337 -3.0516 0.9996 51 1 0.9602 -2.8635 -0.6331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087357015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:18 Heat of formation + Delta-G solvation = 57.966375 kcal Electronic energy + Delta-G solvation = -29916.129492 eV Core-core repulsion = 26203.904426 eV Total energy + Delta-G solvation = -3712.225066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89956 -39.54716 -38.13861 -35.76992 -33.61763 -33.04549 -31.62954 -30.08327 -29.85966 -27.70855 -26.63281 -25.76717 -25.49606 -24.21549 -22.28649 -21.99646 -20.94989 -20.80777 -19.98616 -17.84863 -17.29912 -16.40618 -16.30876 -16.07540 -15.70359 -15.43592 -14.99072 -14.76626 -14.36413 -14.15990 -13.84302 -13.59120 -13.28004 -12.83837 -12.71282 -12.61817 -12.39524 -12.21221 -12.18147 -12.11974 -11.81135 -11.76344 -11.45454 -11.21243 -11.15393 -11.02258 -10.84311 -10.69863 -10.66113 -10.52562 -10.34935 -10.11475 -9.87404 -9.65635 -9.53368 -9.28492 -9.18730 -9.02454 -8.48855 -8.36252 -6.83950 -5.65597 -3.02004 1.29437 3.09540 3.32351 3.40102 3.46538 3.48196 4.15123 4.29604 4.49062 4.52130 4.73010 4.86930 4.88548 5.06560 5.08333 5.17956 5.33141 5.34693 5.41124 5.42765 5.43954 5.50259 5.51869 5.56260 5.60419 5.62820 5.72586 5.73838 5.75763 5.86684 5.88500 6.01310 6.03564 6.08878 6.10693 6.16695 6.22357 6.27115 6.39540 6.47873 6.53883 6.60989 6.69012 6.75695 6.88519 6.96586 7.03188 7.65102 7.70345 7.77296 7.91309 8.31912 8.33534 9.27072 9.87897 10.41871 11.39844 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.002885 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.993391 B = 9702.998564 C = 9894.613907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.156 4.156 3 C 0.574 3.426 4 O -0.549 6.549 5 N -0.613 5.613 6 C 0.102 3.898 7 C -0.106 4.106 8 H 0.078 0.922 9 C -0.080 4.080 10 H 0.075 0.925 11 C 0.078 3.922 12 C -0.109 4.109 13 H 0.065 0.935 14 C -0.104 4.104 15 C -0.134 4.134 16 C 0.180 3.820 17 H 0.067 0.933 18 N -0.600 5.600 19 C -0.232 4.232 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.908 3.092 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.203 3.797 28 C -0.078 4.078 29 C -0.100 4.100 30 C -0.142 4.142 31 C -0.104 4.104 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.249 0.751 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -18.759 8.688 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.159 4.159 3 C 0.365 3.635 4 O -0.429 6.429 5 N -0.346 5.346 6 C -0.020 4.020 7 C -0.127 4.127 8 H 0.096 0.904 9 C -0.099 4.099 10 H 0.094 0.906 11 C -0.044 4.044 12 C -0.129 4.129 13 H 0.084 0.916 14 C -0.141 4.141 15 C -0.174 4.174 16 C 0.072 3.928 17 H 0.086 0.914 18 N -0.323 5.323 19 C -0.361 4.361 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.079 3.921 28 C -0.080 4.080 29 C -0.137 4.137 30 C -0.180 4.180 31 C -0.141 4.141 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.428 -18.727 8.625 20.761 hybrid contribution 0.060 0.965 -0.604 1.141 sum 2.489 -17.762 8.021 19.647 Atomic orbital electron populations 1.21132 0.90798 1.03083 1.02262 1.20418 0.95859 0.91147 1.08439 1.17846 0.86403 0.82571 0.76690 1.90753 1.13745 1.87009 1.51411 1.48852 1.10665 1.05512 1.69530 1.22752 0.99191 0.80258 0.99837 1.22685 0.95536 0.96841 0.97635 0.90398 1.21961 0.95846 0.93799 0.98287 0.90630 1.23434 0.81602 0.99715 0.99676 1.21788 0.96023 0.98664 0.96398 0.91642 1.21467 0.98069 0.98613 0.95992 1.22171 0.96767 0.99895 0.98517 1.20507 0.93287 0.90437 0.88608 0.91445 1.44623 1.17911 1.24837 1.44958 1.19329 1.02511 0.97822 1.16424 0.90727 1.24778 0.96820 0.99063 0.99820 1.70035 1.10868 1.39490 1.36774 0.86098 0.77475 0.83307 0.79216 1.20616 1.21902 1.21899 1.21106 0.87966 0.87720 0.95339 1.23171 0.98023 0.93562 0.93235 1.22130 0.94081 0.95749 1.01720 1.22716 0.96676 0.98164 1.00406 1.22263 0.98476 0.91716 1.01620 0.90747 0.91749 0.90319 0.90731 0.90250 0.89225 0.90226 0.92478 0.93298 0.92920 0.92161 0.93980 0.93017 0.93358 0.89902 0.88643 0.90561 0.89812 0.88412 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 7.99 36.00 0.29 -0.81 16 2 C -0.16 -1.94 5.98 -102.85 -0.62 -2.55 16 3 C 0.57 9.01 7.83 -12.67 -0.10 8.91 16 4 O -0.55 -10.23 15.53 5.26 0.08 -10.15 16 5 N -0.61 -9.12 3.32 -170.66 -0.57 -9.68 16 6 C 0.10 1.58 6.36 -2.41 -0.02 1.57 16 7 C -0.11 -1.83 3.33 -89.17 -0.30 -2.12 16 8 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 9 C -0.08 -1.27 3.15 -89.25 -0.28 -1.56 16 10 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.08 1.01 4.42 -2.39 -0.01 1.00 16 12 C -0.11 -1.88 2.87 -90.29 -0.26 -2.13 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.10 -1.64 5.30 -26.75 -0.14 -1.78 16 15 C -0.13 -2.24 5.53 -26.60 -0.15 -2.39 16 16 C 0.18 3.46 3.19 -67.00 -0.21 3.25 16 17 H 0.07 1.31 7.99 -51.93 -0.42 0.89 16 18 N -0.60 -14.26 2.88 -163.18 -0.47 -14.73 16 19 C -0.23 -6.20 9.99 -15.06 -0.15 -6.35 16 20 H 0.07 1.95 7.79 -52.48 -0.41 1.54 16 21 C -0.01 -0.25 5.47 -17.43 -0.10 -0.35 16 22 N -0.92 -26.23 9.77 55.49 0.54 -25.69 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.20 4.64 4.37 -3.11 -0.01 4.63 16 28 C -0.08 -0.87 6.59 -100.48 -0.66 -1.53 16 29 C -0.10 -1.06 6.94 -27.56 -0.19 -1.25 16 30 C -0.14 -1.12 8.17 -26.20 -0.21 -1.33 16 31 C -0.10 -0.81 7.62 -27.41 -0.21 -1.02 16 32 H 0.07 0.66 6.96 -51.93 -0.36 0.30 16 33 H 0.06 0.50 7.78 -51.93 -0.40 0.10 16 34 H 0.08 0.74 5.70 -51.93 -0.30 0.44 16 35 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 36 H 0.08 1.16 5.21 -51.93 -0.27 0.89 16 37 H 0.09 1.01 4.33 -51.93 -0.22 0.79 16 38 H 0.08 0.97 5.05 -51.93 -0.26 0.71 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.65 5.78 -51.93 -0.30 0.35 16 41 H 0.05 0.76 5.67 -51.93 -0.29 0.47 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.05 1.34 7.22 -51.93 -0.37 0.96 16 45 H 0.05 1.25 7.24 -51.93 -0.38 0.87 16 46 H 0.08 1.05 7.64 -51.93 -0.40 0.65 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -30.74 369.41 -11.35 -42.09 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.16 Total: 1.57 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.33 Total: -5.83 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.49 Total: -50.10 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.74 -11.35 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.055 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds