Wall clock time and date at job start Tue Mar 31 2020 16:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.47101 * 120.00247 * 2 1 4 4 O 1.21619 * 120.00184 * 172.59655 * 3 2 1 5 5 N 1.34772 * 119.99723 * 352.58689 * 3 2 1 6 6 C 1.48168 * 127.83595 * 174.32582 * 5 3 2 7 7 C 1.54371 * 104.56304 * 140.32787 * 6 5 3 8 8 H 1.09004 * 110.94292 * 263.57077 * 7 6 5 9 9 C 1.54165 * 105.00929 * 24.09116 * 7 6 5 10 10 H 1.08997 * 110.87100 * 239.92044 * 9 7 6 11 11 C 1.48143 * 127.83795 * 354.28249 * 5 3 2 12 12 C 1.53024 * 109.71809 * 116.60874 * 9 7 6 13 13 H 1.09000 * 109.63094 * 179.80120 * 12 9 7 14 14 C 1.53038 * 109.19649 * 300.53382 * 12 9 7 15 15 C 1.52932 * 110.00598 * 59.23778 * 14 12 9 16 16 C 1.53229 * 108.97404 * 141.21633 * 7 6 5 17 17 H 1.08996 * 110.49130 * 67.91861 * 16 7 6 18 18 N 1.47686 * 108.04932 * 188.92038 * 16 7 6 19 19 C 1.36935 * 122.07596 * 238.64776 * 18 16 7 20 20 H 1.08004 * 119.99929 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00250 * 180.27933 * 19 18 16 22 22 N 1.31627 * 119.99541 * 359.71331 * 21 19 18 23 23 Si 1.86800 * 120.00303 * 179.72260 * 21 19 18 24 24 H 1.48498 * 109.47072 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47020 * 119.99514 * 23 21 19 26 26 H 1.48503 * 109.46801 * 239.99525 * 23 21 19 27 27 C 1.47644 * 115.84999 * 58.91104 * 18 16 7 28 28 C 1.32993 * 120.00058 * 179.97438 * 2 1 3 29 29 C 1.51409 * 136.31949 * 179.63078 * 28 2 1 30 30 C 1.53378 * 87.51864 * 206.06196 * 29 28 2 31 31 C 1.51402 * 136.31579 * 0.02562 * 28 2 1 32 32 H 1.09001 * 109.47364 * 84.90431 * 1 2 3 33 33 H 1.09005 * 109.47520 * 204.90636 * 1 2 3 34 34 H 1.09005 * 109.47375 * 324.90656 * 1 2 3 35 35 H 1.09002 * 110.41689 * 21.55702 * 6 5 3 36 36 H 1.09003 * 110.51777 * 259.14854 * 6 5 3 37 37 H 1.08997 * 110.40035 * 338.28885 * 11 5 3 38 38 H 1.08998 * 110.40007 * 100.70897 * 11 5 3 39 39 H 1.09002 * 109.38395 * 179.40027 * 14 12 9 40 40 H 1.09007 * 109.38454 * 299.18195 * 14 12 9 41 41 H 1.09001 * 109.45173 * 240.82861 * 15 14 12 42 42 H 1.09003 * 109.45516 * 120.89747 * 15 14 12 43 43 H 0.96999 * 119.99616 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.99560 * 119.41076 * 27 18 16 45 45 H 1.09000 * 109.99125 * 240.78985 * 27 18 16 46 46 H 1.09000 * 113.55688 * 320.63850 * 29 28 2 47 47 H 1.08994 * 113.56108 * 91.37322 * 29 28 2 48 48 H 1.09001 * 113.96628 * 220.29157 * 30 29 28 49 49 H 1.09003 * 113.70922 * 88.80482 * 30 29 28 50 50 H 1.09003 * 113.56141 * 268.61937 * 31 28 2 51 51 H 1.08998 * 113.56313 * 39.35111 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4510 1.2783 0.1357 5 7 1.5770 2.4362 -0.1506 6 6 2.1196 3.8121 -0.0623 7 6 1.4031 4.5850 -1.1902 8 1 2.0195 4.6239 -2.0884 9 6 0.0947 3.8081 -1.4379 10 1 0.0454 3.4482 -2.4655 11 6 0.1374 2.6279 -0.4428 12 6 -1.1049 4.6970 -1.1026 13 1 -2.0291 4.1476 -1.2815 14 6 -1.0211 5.1229 0.3649 15 6 0.2804 5.8862 0.6147 16 6 1.0711 5.9963 -0.6942 17 1 1.9837 6.5747 -0.5505 18 7 0.2022 6.6418 -1.6988 19 6 0.5529 7.8106 -2.3202 20 1 1.4907 8.2896 -2.0800 21 6 -0.2996 8.3832 -3.2541 22 7 -1.4426 7.7997 -3.5465 23 14 0.1754 9.9817 -4.0960 24 1 1.4994 10.4304 -3.5953 25 1 0.2479 9.7657 -5.5634 26 1 -0.8439 11.0198 -3.7981 27 6 -1.0709 5.9520 -1.9873 28 6 2.1719 -1.1517 0.0005 29 6 3.6250 -1.5772 -0.0060 30 6 3.1707 -2.8821 -0.6719 31 6 1.8137 -2.6228 0.0007 32 1 -0.3634 0.0913 -1.0236 33 1 -0.3634 -0.9321 0.4328 34 1 -0.3634 0.8409 0.5908 35 1 3.1968 3.8076 -0.2292 36 1 1.8877 4.2528 0.9074 37 1 -0.2803 1.7306 -0.8994 38 1 -0.4050 2.8795 0.4685 39 1 -1.8687 5.7651 0.6043 40 1 -1.0471 4.2377 1.0006 41 1 0.8770 5.3539 1.3555 42 1 0.0500 6.8853 0.9846 43 1 -2.0382 8.1996 -4.1994 44 1 -1.9108 6.6036 -1.7464 45 1 -1.1096 5.6653 -3.0382 46 1 4.2566 -0.9605 -0.6455 47 1 4.0419 -1.7189 0.9910 48 1 3.6834 -3.7699 -0.3017 49 1 3.1393 -2.8309 -1.7603 50 1 1.7337 -3.0516 0.9996 51 1 0.9602 -2.8635 -0.6331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087357015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:17 Heat of formation + Delta-G solvation = 41.549205 kcal Electronic energy + Delta-G solvation = -29916.841394 eV Core-core repulsion = 26203.904426 eV Total energy + Delta-G solvation = -3712.936968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23661 -40.60784 -39.12390 -37.20301 -35.09258 -34.29263 -33.11722 -31.68273 -31.35212 -29.01099 -27.51728 -27.22234 -26.37886 -25.61733 -23.64725 -23.25459 -22.33929 -22.24169 -21.04309 -19.17022 -18.80813 -17.76866 -17.50698 -17.30267 -16.78039 -16.57267 -16.48119 -16.22911 -15.77920 -15.50372 -15.03818 -14.70771 -14.29090 -14.19573 -14.03505 -13.73674 -13.69744 -13.59078 -13.31621 -13.11550 -13.00914 -12.89387 -12.84503 -12.74510 -12.50596 -12.35278 -12.31950 -12.14363 -12.01624 -11.86738 -11.77108 -11.68253 -11.31325 -11.15524 -10.84075 -10.66472 -10.61279 -10.48441 -9.96623 -9.47696 -8.81147 -7.74362 -5.11833 0.37386 1.44671 1.45543 1.54884 1.96425 2.23257 2.51049 3.27716 3.36504 3.52734 3.57359 3.64900 3.77111 3.83991 3.88385 4.00770 4.16450 4.21600 4.24974 4.31537 4.32707 4.41351 4.44979 4.54596 4.60769 4.66719 4.72490 4.75984 4.76975 4.80721 4.84618 4.89649 4.95863 5.02728 5.03854 5.05494 5.07916 5.09829 5.16344 5.27993 5.37349 5.40092 5.42862 5.48407 5.53693 5.54648 5.65235 5.76792 5.82971 5.94589 6.31022 6.62264 7.15195 7.20657 7.91422 8.40727 9.28171 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.002885 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.993391 B = 9702.998564 C = 9894.613907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.177 4.177 3 C 0.565 3.435 4 O -0.591 6.591 5 N -0.614 5.614 6 C 0.111 3.889 7 C -0.101 4.101 8 H 0.047 0.953 9 C -0.078 4.078 10 H 0.062 0.938 11 C 0.090 3.910 12 C -0.098 4.098 13 H 0.090 0.910 14 C -0.100 4.100 15 C -0.127 4.127 16 C 0.173 3.827 17 H 0.058 0.942 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.296 1.296 26 H -0.293 1.293 27 C 0.212 3.788 28 C -0.082 4.082 29 C -0.115 4.115 30 C -0.133 4.133 31 C -0.089 4.089 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.243 0.757 44 H 0.015 0.985 45 H 0.007 0.993 46 H 0.051 0.949 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.119 0.881 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -21.715 10.723 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.358 3.642 4 O -0.474 6.474 5 N -0.345 5.345 6 C -0.012 4.012 7 C -0.122 4.122 8 H 0.066 0.934 9 C -0.098 4.098 10 H 0.080 0.920 11 C -0.031 4.031 12 C -0.117 4.117 13 H 0.108 0.892 14 C -0.137 4.137 15 C -0.166 4.166 16 C 0.065 3.935 17 H 0.076 0.924 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.224 1.224 26 H -0.220 1.220 27 C 0.088 3.912 28 C -0.084 4.084 29 C -0.152 4.152 30 C -0.170 4.170 31 C -0.126 4.126 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.025 0.975 46 H 0.070 0.930 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.100 0.900 50 H 0.137 0.863 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.587 -21.698 10.688 24.239 hybrid contribution 0.479 1.885 -1.268 2.322 sum 2.066 -19.813 9.419 22.035 Atomic orbital electron populations 1.21151 0.88300 1.04530 1.02923 1.20491 0.97468 0.89594 1.10459 1.18547 0.86198 0.83696 0.75770 1.90730 1.15661 1.87625 1.53357 1.48889 1.11381 1.04957 1.69317 1.22582 0.98146 0.80948 0.99516 1.22465 0.96319 0.96265 0.97153 0.93427 1.21901 0.94316 0.94739 0.98818 0.91961 1.23501 0.80753 0.99160 0.99673 1.21640 0.97697 0.96093 0.96259 0.89193 1.21471 0.97051 1.00015 0.95184 1.22075 0.97390 0.99956 0.97185 1.20739 0.92748 0.90896 0.89079 0.92413 1.44884 1.18940 1.24485 1.45768 1.19659 1.02264 0.98856 1.16243 0.90850 1.25502 0.97174 1.02094 1.01030 1.70268 1.11657 1.40572 1.37266 0.85163 0.77431 0.79945 0.77748 1.19513 1.22364 1.22049 1.20726 0.86484 0.89582 0.94402 1.23686 0.98422 0.95252 0.91009 1.22273 0.93846 0.97247 1.01816 1.22701 0.96846 0.97244 1.00220 1.22315 0.98733 0.88520 1.03001 0.90100 0.89534 0.89903 0.92195 0.88488 0.86634 0.87974 0.93066 0.89139 0.89771 0.93620 0.94755 0.96701 0.97516 0.92998 0.88147 0.88442 0.90010 0.86300 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 7.99 71.23 0.57 -1.08 16 2 C -0.18 -3.97 5.98 -18.71 -0.11 -4.08 16 3 C 0.56 17.06 7.83 86.57 0.68 17.74 16 4 O -0.59 -22.21 15.53 -4.09 -0.06 -22.28 16 5 N -0.61 -17.07 3.32 -812.11 -2.69 -19.76 16 6 C 0.11 3.33 6.36 86.52 0.55 3.88 16 7 C -0.10 -3.50 3.33 -9.86 -0.03 -3.53 16 8 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 9 C -0.08 -2.41 3.15 -9.90 -0.03 -2.44 16 10 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 11 C 0.09 2.04 4.42 86.55 0.38 2.42 16 12 C -0.10 -3.22 2.87 -10.58 -0.03 -3.25 16 13 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 14 C -0.10 -2.86 5.30 30.58 0.16 -2.70 16 15 C -0.13 -4.02 5.53 30.68 0.17 -3.85 16 16 C 0.17 6.68 3.19 44.95 0.14 6.82 16 17 H 0.06 2.30 7.99 -2.39 -0.02 2.28 16 18 N -0.62 -30.36 2.88 -670.18 -1.93 -32.29 16 19 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 20 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 21 C -0.07 -3.72 5.47 84.86 0.46 -3.25 16 22 N -0.95 -56.33 9.77 21.65 0.21 -56.12 16 23 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 C 0.21 10.08 4.37 86.36 0.38 10.46 16 28 C -0.08 -1.63 6.59 -17.17 -0.11 -1.75 16 29 C -0.11 -2.33 6.94 30.06 0.21 -2.12 16 30 C -0.13 -1.72 8.17 30.94 0.25 -1.47 16 31 C -0.09 -1.03 7.62 30.15 0.23 -0.80 16 32 H 0.08 1.07 6.96 -2.39 -0.02 1.06 16 33 H 0.09 0.90 7.78 -2.38 -0.02 0.88 16 34 H 0.08 1.13 5.70 -2.38 -0.01 1.12 16 35 H 0.06 1.98 7.84 -2.39 -0.02 1.96 16 36 H 0.10 2.57 5.21 -2.39 -0.01 2.56 16 37 H 0.12 2.12 4.33 -2.39 -0.01 2.11 16 38 H 0.10 1.92 5.05 -2.39 -0.01 1.91 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.91 5.78 -2.38 -0.01 1.89 16 41 H 0.08 2.15 5.67 -2.39 -0.01 2.13 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.01 0.80 7.22 -2.39 -0.02 0.79 16 45 H 0.01 0.36 7.24 -2.39 -0.02 0.35 16 46 H 0.05 1.36 7.64 -2.39 -0.02 1.34 16 47 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -72.42 369.41 3.19 -69.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.93 Total: 14.30 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.71 Total: -1.49 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.41 Total: -108.17 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.42 3.19 -69.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.778 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds