Wall clock time and date at job start Tue Mar 31 2020 16:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46987 * 2 1 4 4 C 1.38249 * 120.00462 * 265.21253 * 3 2 1 5 5 C 1.38215 * 120.00289 * 180.25453 * 4 3 2 6 6 C 1.38256 * 119.99515 * 359.76573 * 5 4 3 7 7 C 1.38211 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99435 * 85.00374 * 3 2 1 9 9 C 1.50697 * 120.00532 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.46847 * 84.72612 * 9 8 3 11 11 O 1.21278 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99806 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00328 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.64101 * 328.14487 * 13 12 10 15 15 C 1.55164 * 110.72084 * 91.47559 * 13 12 10 16 16 C 1.54689 * 101.67811 * 153.70122 * 15 13 12 17 17 N 1.47427 * 104.94416 * 323.28254 * 16 15 13 18 18 C 1.36930 * 125.64901 * 204.07184 * 17 16 15 19 19 H 1.08001 * 119.99936 * 156.58830 * 18 17 16 20 20 C 1.38809 * 119.99924 * 336.59062 * 18 17 16 21 21 N 1.31612 * 120.00321 * 336.38507 * 20 18 17 22 22 Si 1.86804 * 119.99805 * 156.38364 * 20 18 17 23 23 H 1.48506 * 109.47129 * 270.00042 * 22 20 18 24 24 H 1.48494 * 109.47395 * 149.99982 * 22 20 18 25 25 H 1.48496 * 109.47388 * 29.99587 * 22 20 18 26 26 C 1.47031 * 108.70304 * 23.80469 * 17 16 15 27 27 H 1.08994 * 109.88032 * 239.75553 * 26 17 16 28 28 C 1.52999 * 109.88185 * 118.58337 * 26 17 16 29 29 C 1.53004 * 109.46747 * 64.79978 * 28 26 17 30 30 H 1.09000 * 109.47407 * 59.99512 * 1 2 3 31 31 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46772 * 299.99830 * 1 2 3 33 33 H 1.08998 * 109.47015 * 240.00661 * 2 1 3 34 34 H 1.08995 * 109.47717 * 120.00120 * 2 1 3 35 35 H 1.07998 * 120.00237 * 0.03894 * 4 3 2 36 36 H 1.07997 * 120.00152 * 179.78903 * 5 4 3 37 37 H 1.08001 * 120.00071 * 179.97438 * 6 5 4 38 38 H 1.08006 * 119.99870 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47109 * 324.73230 * 9 8 3 40 40 H 1.08996 * 109.47356 * 204.72936 * 9 8 3 41 41 H 0.97002 * 120.00603 * 0.02562 * 12 10 9 42 42 H 1.08996 * 111.00404 * 271.94584 * 15 13 12 43 43 H 1.09000 * 111.00027 * 35.76084 * 15 13 12 44 44 H 1.08992 * 110.39292 * 204.36392 * 16 15 13 45 45 H 1.09005 * 110.23390 * 82.11568 * 16 15 13 46 46 H 0.97000 * 119.99615 * 353.58523 * 21 20 18 47 47 H 1.09001 * 109.47175 * 184.79485 * 28 26 17 48 48 H 1.08997 * 109.47095 * 304.80310 * 28 26 17 49 49 H 1.09000 * 109.46810 * 292.00804 * 29 28 26 50 50 H 1.09000 * 109.46998 * 52.00724 * 29 28 26 51 51 H 1.08994 * 109.47278 * 172.01325 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3569 2.0394 -1.1930 5 6 2.8226 3.3407 -1.1926 6 6 2.9592 4.0255 0.0007 7 6 2.6305 3.4086 1.1931 8 6 2.1643 2.1071 1.1925 9 6 1.8055 1.4348 2.4926 10 6 2.9822 0.6318 2.9844 11 8 4.0110 0.6083 2.3426 12 7 2.8911 -0.0601 4.1373 13 6 4.0351 -0.8402 4.6158 14 1 4.6145 -1.2265 3.7772 15 6 4.9263 0.0130 5.5568 16 6 5.5844 -1.0758 6.4369 17 7 4.5336 -2.0906 6.6353 18 6 4.4658 -2.9760 7.6777 19 1 3.5169 -3.4092 7.9574 20 6 5.6168 -3.3168 8.3747 21 7 6.7948 -3.1925 7.8010 22 14 5.4938 -3.9518 10.1272 23 1 5.5576 -2.8089 11.0734 24 1 6.6199 -4.8813 10.3972 25 1 4.2061 -4.6697 10.3044 26 6 3.5669 -1.9904 5.5320 27 1 2.5753 -1.7695 5.9269 28 6 3.5369 -3.3025 4.7457 29 6 3.0100 -4.4234 5.6441 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2500 1.5046 -2.1252 36 1 3.0794 3.8227 -2.1243 37 1 3.3234 5.0423 0.0012 38 1 2.7376 3.9435 2.1252 39 1 0.9538 0.7727 2.3362 40 1 1.5465 2.1911 3.2334 41 1 2.0682 -0.0416 4.6505 42 1 5.6758 0.5656 4.9903 43 1 4.3212 0.6877 6.1623 44 1 5.8916 -0.6556 7.3945 45 1 6.4400 -1.5114 5.9209 46 1 6.8545 -2.9525 6.8631 47 1 2.8831 -3.1927 3.8805 48 1 4.5445 -3.5486 4.4109 49 1 3.7354 -4.6294 6.4311 50 1 2.0651 -4.1160 6.0922 51 1 2.8543 -5.3231 5.0489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087621184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:18 Heat of formation + Delta-G solvation = -8.549830 kcal Electronic energy + Delta-G solvation = -28922.973681 eV Core-core repulsion = 25207.864256 eV Total energy + Delta-G solvation = -3715.109425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36926 -39.18079 -37.78244 -34.47321 -34.19672 -32.78050 -32.58712 -31.82638 -29.68657 -28.82374 -27.80286 -26.56654 -24.42717 -23.97722 -22.39419 -21.79127 -21.04871 -20.30878 -20.27761 -19.40211 -17.41879 -16.98236 -16.65528 -16.21994 -15.95313 -15.25713 -14.63705 -14.44721 -14.24558 -13.98490 -13.79694 -13.64498 -13.53117 -13.25525 -13.19827 -12.98866 -12.88663 -12.44410 -12.33633 -12.20767 -11.96804 -11.91714 -11.63249 -11.45272 -11.10532 -10.96426 -10.91601 -10.82980 -10.75722 -10.47414 -10.25286 -10.11718 -10.06222 -9.84362 -9.72434 -9.40893 -8.89560 -8.71142 -8.68334 -8.42485 -6.92936 -6.04005 -3.20288 1.22602 1.30602 2.75536 3.27284 3.49493 3.51464 3.67480 3.74105 4.47373 4.56829 4.59364 4.75293 4.81151 4.92465 4.98684 5.06470 5.15025 5.20375 5.23703 5.33859 5.35638 5.36470 5.41888 5.43009 5.49092 5.70693 5.71470 5.74755 5.87391 5.91996 5.96225 5.97240 6.07150 6.07848 6.14960 6.29000 6.36488 6.39711 6.40032 6.49966 6.54646 6.56082 6.66413 6.78794 6.90457 6.95743 7.04845 7.10368 7.31885 7.67464 7.83823 8.38006 8.48624 9.02513 9.79818 10.36784 11.24451 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002667 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.691974 B =10497.245584 C =11197.354938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.513 3.487 11 O -0.532 6.532 12 N -0.718 5.718 13 C 0.135 3.865 14 H 0.094 0.906 15 C -0.145 4.145 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.324 4.324 19 H 0.066 0.934 20 C -0.026 4.026 21 N -0.918 5.918 22 Si 1.068 2.932 23 H -0.294 1.294 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.158 3.842 27 H 0.036 0.964 28 C -0.122 4.122 29 C -0.150 4.150 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.398 0.602 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.029 0.971 46 H 0.271 0.729 47 H 0.038 0.962 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.038 0.962 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 11.134 -14.941 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.299 3.701 11 O -0.408 6.408 12 N -0.369 5.369 13 C 0.031 3.969 14 H 0.112 0.888 15 C -0.184 4.184 16 C 0.018 3.982 17 N -0.318 5.318 18 C -0.452 4.452 19 H 0.084 0.916 20 C -0.228 4.228 21 N -0.559 5.559 22 Si 0.898 3.102 23 H -0.221 1.221 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.050 3.950 27 H 0.054 0.946 28 C -0.162 4.162 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.232 0.768 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.111 0.889 50 H 0.057 0.943 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.868 10.557 -13.987 21.164 hybrid contribution -1.222 0.497 -1.111 1.725 sum -13.090 11.053 -15.098 22.835 Atomic orbital electron populations 1.21772 0.94701 1.01863 1.02069 1.20575 0.95924 0.92880 1.03296 1.19668 0.98316 0.95662 0.92621 1.20966 1.00248 0.95205 0.97315 1.21089 0.99817 0.94862 0.97985 1.21052 1.00799 0.99951 0.92559 1.20976 0.98586 0.94523 0.98173 1.19112 0.99864 0.93966 0.93104 1.20769 0.97884 1.00130 0.96007 1.20416 0.89281 0.79729 0.80718 1.90727 1.31038 1.62673 1.56346 1.46067 1.17170 1.49749 1.23895 1.22089 0.86650 0.91546 0.96647 0.88822 1.23160 0.99066 0.98300 0.97899 1.21503 0.91745 0.87824 0.97089 1.44502 1.26611 1.37273 1.23369 1.19689 0.95142 1.22814 1.07548 0.91635 1.25791 0.92166 0.99207 1.05662 1.70723 1.24827 1.46109 1.14244 0.83464 0.74884 0.76242 0.75600 1.22136 1.21638 1.21878 1.21170 0.94139 0.91505 0.88156 0.94625 1.21874 1.00136 0.97040 0.97107 1.21913 1.01561 0.96361 1.00832 0.92528 0.92225 0.92523 0.90986 0.90888 0.86280 0.86310 0.86241 0.86253 0.87884 0.88157 0.76812 0.91686 0.91699 0.93068 0.95291 0.91741 0.94328 0.92641 0.88909 0.94298 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.72 37.16 0.36 -0.80 16 2 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 3 C -0.06 -0.71 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -1.25 9.68 -39.59 -0.38 -1.64 16 5 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 6 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 7 C -0.10 -1.16 9.68 -39.58 -0.38 -1.55 16 8 C -0.06 -0.70 4.37 -104.63 -0.46 -1.15 16 9 C -0.11 -1.11 5.16 -29.04 -0.15 -1.26 16 10 C 0.51 7.24 7.00 -10.99 -0.08 7.16 16 11 O -0.53 -9.76 15.68 5.56 0.09 -9.67 16 12 N -0.72 -9.95 5.18 -52.03 -0.27 -10.22 16 13 C 0.14 2.39 2.85 -66.09 -0.19 2.20 16 14 H 0.09 1.84 7.25 -51.93 -0.38 1.46 16 15 C -0.14 -2.71 6.76 -24.70 -0.17 -2.87 16 16 C 0.14 3.31 5.39 -2.65 -0.01 3.29 16 17 N -0.59 -14.09 2.96 -162.71 -0.48 -14.58 16 18 C -0.32 -8.52 7.32 -15.06 -0.11 -8.63 16 19 H 0.07 1.72 7.05 -52.49 -0.37 1.35 16 20 C -0.03 -0.71 5.20 -17.43 -0.09 -0.80 16 21 N -0.92 -27.14 13.04 55.49 0.72 -26.42 16 22 Si 1.07 24.85 29.98 -169.99 -5.10 19.76 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.16 3.09 3.01 -66.95 -0.20 2.89 16 27 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 28 C -0.12 -2.34 5.47 -26.73 -0.15 -2.48 16 29 C -0.15 -2.90 8.89 37.16 0.33 -2.57 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 6.79 -51.93 -0.35 0.07 16 33 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.10 0.86 5.63 -51.93 -0.29 0.57 16 40 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 41 H 0.40 4.48 8.37 -40.82 -0.34 4.14 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 1.27 8.13 -51.93 -0.42 0.85 16 45 H 0.03 0.72 6.67 -51.93 -0.35 0.38 16 46 H 0.27 8.06 5.93 -40.82 -0.24 7.81 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.09 2.12 5.46 -51.93 -0.28 1.84 16 50 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -31.98 398.14 -10.66 -42.64 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.47 Total: 6.28 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.16 Total: -13.78 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.03 Total: -51.22 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.98 -10.66 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.091 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds