Wall clock time and date at job start Tue Mar 31 2020 16:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46987 * 2 1 4 4 C 1.38249 * 120.00462 * 265.21253 * 3 2 1 5 5 C 1.38215 * 120.00289 * 180.25453 * 4 3 2 6 6 C 1.38256 * 119.99515 * 359.76573 * 5 4 3 7 7 C 1.38211 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99435 * 85.00374 * 3 2 1 9 9 C 1.50697 * 120.00532 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.46847 * 84.72612 * 9 8 3 11 11 O 1.21278 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99806 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00328 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.64101 * 328.14487 * 13 12 10 15 15 C 1.55164 * 110.72084 * 91.47559 * 13 12 10 16 16 C 1.54689 * 101.67811 * 153.70122 * 15 13 12 17 17 N 1.47427 * 104.94416 * 323.28254 * 16 15 13 18 18 C 1.36930 * 125.64901 * 204.07184 * 17 16 15 19 19 H 1.08001 * 119.99936 * 156.58830 * 18 17 16 20 20 C 1.38809 * 119.99924 * 336.59062 * 18 17 16 21 21 N 1.31612 * 120.00321 * 336.38507 * 20 18 17 22 22 Si 1.86804 * 119.99805 * 156.38364 * 20 18 17 23 23 H 1.48506 * 109.47129 * 270.00042 * 22 20 18 24 24 H 1.48494 * 109.47395 * 149.99982 * 22 20 18 25 25 H 1.48496 * 109.47388 * 29.99587 * 22 20 18 26 26 C 1.47031 * 108.70304 * 23.80469 * 17 16 15 27 27 H 1.08994 * 109.88032 * 239.75553 * 26 17 16 28 28 C 1.52999 * 109.88185 * 118.58337 * 26 17 16 29 29 C 1.53004 * 109.46747 * 64.79978 * 28 26 17 30 30 H 1.09000 * 109.47407 * 59.99512 * 1 2 3 31 31 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46772 * 299.99830 * 1 2 3 33 33 H 1.08998 * 109.47015 * 240.00661 * 2 1 3 34 34 H 1.08995 * 109.47717 * 120.00120 * 2 1 3 35 35 H 1.07998 * 120.00237 * 0.03894 * 4 3 2 36 36 H 1.07997 * 120.00152 * 179.78903 * 5 4 3 37 37 H 1.08001 * 120.00071 * 179.97438 * 6 5 4 38 38 H 1.08006 * 119.99870 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47109 * 324.73230 * 9 8 3 40 40 H 1.08996 * 109.47356 * 204.72936 * 9 8 3 41 41 H 0.97002 * 120.00603 * 0.02562 * 12 10 9 42 42 H 1.08996 * 111.00404 * 271.94584 * 15 13 12 43 43 H 1.09000 * 111.00027 * 35.76084 * 15 13 12 44 44 H 1.08992 * 110.39292 * 204.36392 * 16 15 13 45 45 H 1.09005 * 110.23390 * 82.11568 * 16 15 13 46 46 H 0.97000 * 119.99615 * 353.58523 * 21 20 18 47 47 H 1.09001 * 109.47175 * 184.79485 * 28 26 17 48 48 H 1.08997 * 109.47095 * 304.80310 * 28 26 17 49 49 H 1.09000 * 109.46810 * 292.00804 * 29 28 26 50 50 H 1.09000 * 109.46998 * 52.00724 * 29 28 26 51 51 H 1.08994 * 109.47278 * 172.01325 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3569 2.0394 -1.1930 5 6 2.8226 3.3407 -1.1926 6 6 2.9592 4.0255 0.0007 7 6 2.6305 3.4086 1.1931 8 6 2.1643 2.1071 1.1925 9 6 1.8055 1.4348 2.4926 10 6 2.9822 0.6318 2.9844 11 8 4.0110 0.6083 2.3426 12 7 2.8911 -0.0601 4.1373 13 6 4.0351 -0.8402 4.6158 14 1 4.6145 -1.2265 3.7772 15 6 4.9263 0.0130 5.5568 16 6 5.5844 -1.0758 6.4369 17 7 4.5336 -2.0906 6.6353 18 6 4.4658 -2.9760 7.6777 19 1 3.5169 -3.4092 7.9574 20 6 5.6168 -3.3168 8.3747 21 7 6.7948 -3.1925 7.8010 22 14 5.4938 -3.9518 10.1272 23 1 5.5576 -2.8089 11.0734 24 1 6.6199 -4.8813 10.3972 25 1 4.2061 -4.6697 10.3044 26 6 3.5669 -1.9904 5.5320 27 1 2.5753 -1.7695 5.9269 28 6 3.5369 -3.3025 4.7457 29 6 3.0100 -4.4234 5.6441 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2500 1.5046 -2.1252 36 1 3.0794 3.8227 -2.1243 37 1 3.3234 5.0423 0.0012 38 1 2.7376 3.9435 2.1252 39 1 0.9538 0.7727 2.3362 40 1 1.5465 2.1911 3.2334 41 1 2.0682 -0.0416 4.6505 42 1 5.6758 0.5656 4.9903 43 1 4.3212 0.6877 6.1623 44 1 5.8916 -0.6556 7.3945 45 1 6.4400 -1.5114 5.9209 46 1 6.8545 -2.9525 6.8631 47 1 2.8831 -3.1927 3.8805 48 1 4.5445 -3.5486 4.4109 49 1 3.7354 -4.6294 6.4311 50 1 2.0651 -4.1160 6.0922 51 1 2.8543 -5.3231 5.0489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087621184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:17 Heat of formation + Delta-G solvation = -26.020351 kcal Electronic energy + Delta-G solvation = -28923.731260 eV Core-core repulsion = 25207.864256 eV Total energy + Delta-G solvation = -3715.867004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41088 -40.33412 -39.21750 -35.75391 -35.20168 -34.32139 -33.80752 -33.28643 -30.62500 -30.30961 -29.02979 -27.95057 -26.23896 -24.72041 -23.65083 -23.12474 -22.19546 -21.69629 -21.45741 -20.85982 -19.33962 -18.13967 -17.71107 -17.14990 -17.02801 -16.26367 -16.04364 -15.83761 -15.58234 -15.45973 -15.13256 -14.82532 -14.64511 -14.58680 -14.34571 -14.07970 -13.99420 -13.84737 -13.67951 -13.36867 -13.04256 -12.85185 -12.83047 -12.66466 -12.61650 -12.53814 -12.16355 -12.14922 -11.89559 -11.83128 -11.74815 -11.68457 -11.56895 -11.54131 -11.36325 -10.95200 -10.46873 -10.04312 -9.67871 -9.46574 -8.94298 -8.16727 -5.30407 0.43673 0.52930 1.60042 1.65332 1.67537 1.83433 2.14519 2.68694 2.91312 3.28016 3.46232 3.66905 3.75098 3.76188 3.86678 3.97905 4.06893 4.10848 4.11982 4.26145 4.30830 4.35478 4.38399 4.47209 4.50780 4.54074 4.56002 4.64681 4.67806 4.73177 4.76443 4.87286 4.93357 5.00080 5.03684 5.05467 5.08726 5.14777 5.17894 5.22461 5.24872 5.34154 5.40197 5.57641 5.60694 5.64071 5.64132 5.76280 5.82379 6.15996 6.39213 6.58506 6.96450 7.28768 7.75860 8.35900 9.10695 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002667 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.691974 B =10497.245584 C =11197.354938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.080 4.080 9 C -0.098 4.098 10 C 0.516 3.484 11 O -0.577 6.577 12 N -0.706 5.706 13 C 0.153 3.847 14 H 0.072 0.928 15 C -0.129 4.129 16 C 0.149 3.851 17 N -0.608 5.608 18 C -0.309 4.309 19 H 0.069 0.931 20 C -0.085 4.085 21 N -0.956 5.956 22 Si 1.114 2.886 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.268 1.268 26 C 0.156 3.844 27 H 0.055 0.945 28 C -0.118 4.118 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.415 0.585 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.024 0.976 45 H -0.001 1.001 46 H 0.254 0.746 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.623 12.146 -15.514 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.137 4.137 10 C 0.304 3.696 11 O -0.456 6.456 12 N -0.358 5.358 13 C 0.046 3.954 14 H 0.091 0.909 15 C -0.168 4.168 16 C 0.023 3.977 17 N -0.334 5.334 18 C -0.438 4.438 19 H 0.087 0.913 20 C -0.280 4.280 21 N -0.600 5.600 22 Si 0.940 3.060 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.193 1.193 26 C 0.050 3.950 27 H 0.073 0.927 28 C -0.158 4.158 29 C -0.200 4.200 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.042 0.958 45 H 0.017 0.983 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.069 11.583 -14.567 23.946 hybrid contribution -0.283 0.206 -1.058 1.114 sum -15.352 11.789 -15.625 24.875 Atomic orbital electron populations 1.21742 0.92931 1.02558 1.02641 1.20567 0.97430 0.92113 1.02428 1.19931 0.98602 0.96242 0.93048 1.21254 1.00297 0.95752 0.97818 1.21420 0.99159 0.94811 0.98945 1.21375 1.00587 1.00963 0.92499 1.21261 0.98665 0.94772 0.99075 1.19332 1.00613 0.94414 0.93666 1.20785 0.96363 1.00488 0.96063 1.21094 0.89720 0.79029 0.79800 1.90719 1.33177 1.64115 1.57545 1.45855 1.16627 1.49110 1.24196 1.21612 0.87516 0.91004 0.95239 0.90939 1.23005 0.99226 0.97176 0.97423 1.21317 0.91340 0.88833 0.96188 1.44734 1.27184 1.37040 1.24488 1.19908 0.94867 1.21564 1.07444 0.91286 1.27044 0.92034 1.00115 1.08851 1.70842 1.26056 1.49609 1.13483 0.82842 0.75481 0.75866 0.71823 1.21516 1.22771 1.19254 1.21318 0.93719 0.92541 0.87417 0.92690 1.21815 0.99219 0.96656 0.98067 1.21788 1.00862 0.97401 0.99963 0.92080 0.91433 0.91835 0.91078 0.92515 0.84924 0.84213 0.84392 0.85171 0.85682 0.85382 0.74750 0.91417 0.90005 0.95776 0.98278 0.93498 0.91234 0.95485 0.92876 0.92847 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.72 71.98 0.70 -1.20 16 2 C -0.09 -1.65 5.38 29.85 0.16 -1.49 16 3 C -0.08 -1.67 5.13 -19.87 -0.10 -1.77 16 4 C -0.13 -2.62 9.68 22.27 0.22 -2.41 16 5 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 6 C -0.14 -2.56 10.05 22.27 0.22 -2.34 16 7 C -0.12 -2.46 9.68 22.27 0.22 -2.24 16 8 C -0.08 -1.71 4.37 -19.87 -0.09 -1.79 16 9 C -0.10 -1.72 5.16 29.10 0.15 -1.57 16 10 C 0.52 13.51 7.00 87.66 0.61 14.12 16 11 O -0.58 -20.78 15.68 -3.02 -0.05 -20.83 16 12 N -0.71 -17.77 5.18 -436.91 -2.26 -20.03 16 13 C 0.15 5.23 2.85 46.18 0.13 5.36 16 14 H 0.07 2.85 7.25 -2.38 -0.02 2.84 16 15 C -0.13 -4.77 6.76 31.91 0.22 -4.56 16 16 C 0.15 7.10 5.39 86.78 0.47 7.57 16 17 N -0.61 -29.26 2.96 -668.69 -1.98 -31.25 16 18 C -0.31 -16.35 7.32 84.03 0.61 -15.74 16 19 H 0.07 3.57 7.05 -2.91 -0.02 3.55 16 20 C -0.08 -4.77 5.20 84.86 0.44 -4.33 16 21 N -0.96 -58.94 13.04 21.65 0.28 -58.66 16 22 Si 1.11 50.70 29.98 68.60 2.06 52.76 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 C 0.16 5.93 3.01 45.34 0.14 6.07 16 27 H 0.06 1.93 7.72 -2.39 -0.02 1.91 16 28 C -0.12 -4.39 5.47 30.60 0.17 -4.22 16 29 C -0.14 -5.32 8.89 71.98 0.64 -4.68 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.76 6.79 -2.39 -0.02 0.74 16 33 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 34 H 0.06 1.23 6.40 -2.39 -0.02 1.22 16 35 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.13 1.65 5.63 -2.38 -0.01 1.64 16 40 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 41 H 0.42 7.76 8.37 -92.71 -0.78 6.98 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.02 1.25 8.13 -2.39 -0.02 1.23 16 45 H 0.00 -0.03 6.67 -2.38 -0.02 -0.04 16 46 H 0.25 16.05 5.93 -92.71 -0.55 15.50 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.05 2.41 5.46 -2.39 -0.01 2.40 16 50 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 51 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.30 398.14 3.53 -68.76 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.36 Total: 26.54 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.13 Total: -17.29 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -3.96 Total: -109.93 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.06 Total: 52.76 kcal Total: -72.30 3.53 -68.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.742 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds