Wall clock time and date at job start Tue Mar 31 2020 16:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46603 * 2 1 4 4 C 1.38257 * 120.00505 * 269.97891 * 3 2 1 5 5 C 1.38207 * 120.00289 * 179.83164 * 4 3 2 6 6 C 1.38262 * 119.99908 * 0.45245 * 5 4 3 7 7 C 1.38209 * 119.99783 * 359.50187 * 6 5 4 8 8 C 1.50702 * 119.99948 * 180.25812 * 7 6 5 9 9 C 1.50698 * 109.47150 * 89.99807 * 8 7 6 10 10 O 1.21283 * 119.99970 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00265 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00289 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.64063 * 323.30996 * 12 11 9 14 14 C 1.55157 * 110.72384 * 86.45840 * 12 11 9 15 15 C 1.54902 * 101.58448 * 153.86655 * 14 12 11 16 16 N 1.47427 * 104.83159 * 322.98793 * 15 14 12 17 17 C 1.36941 * 125.64971 * 204.16393 * 16 15 14 18 18 H 1.07995 * 119.99917 * 146.00641 * 17 16 15 19 19 C 1.38813 * 119.99593 * 326.00920 * 17 16 15 20 20 N 1.31625 * 119.99623 * 162.68995 * 19 17 16 21 21 Si 1.86797 * 120.00232 * 342.68462 * 19 17 16 22 22 H 1.48500 * 109.46897 * 86.84669 * 21 19 17 23 23 H 1.48507 * 109.47177 * 206.84304 * 21 19 17 24 24 H 1.48493 * 109.47205 * 326.84725 * 21 19 17 25 25 C 1.47024 * 108.70217 * 24.13021 * 16 15 14 26 26 H 1.09003 * 109.88015 * 239.52117 * 25 16 15 27 27 C 1.53002 * 109.88059 * 118.35930 * 25 16 15 28 28 C 1.53001 * 109.47452 * 63.77161 * 27 25 16 29 29 C 1.38217 * 119.99956 * 90.00506 * 3 2 1 30 30 H 1.08995 * 109.47518 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47190 * 299.99245 * 1 2 3 33 33 H 1.08998 * 109.46674 * 240.00748 * 2 1 3 34 34 H 1.08995 * 109.47518 * 120.00230 * 2 1 3 35 35 H 1.08004 * 119.99797 * 0.02562 * 4 3 2 36 36 H 1.08004 * 120.00243 * 180.23463 * 5 4 3 37 37 H 1.07998 * 119.99711 * 179.78769 * 6 5 4 38 38 H 1.08996 * 109.47123 * 210.00632 * 8 7 6 39 39 H 1.09007 * 109.47151 * 330.00525 * 8 7 6 40 40 H 0.97008 * 119.99787 * 0.02562 * 11 9 8 41 41 H 1.09002 * 111.00042 * 271.94395 * 14 12 11 42 42 H 1.09000 * 110.99912 * 35.74960 * 14 12 11 43 43 H 1.08996 * 110.36963 * 81.82823 * 15 14 12 44 44 H 1.08996 * 110.36776 * 204.04174 * 15 14 12 45 45 H 0.97002 * 119.99628 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46905 * 183.77033 * 27 25 16 47 47 H 1.09004 * 109.47038 * 303.76707 * 27 25 16 48 48 H 1.08994 * 109.46818 * 171.95513 * 28 27 25 49 49 H 1.09002 * 109.47121 * 291.95508 * 28 27 25 50 50 H 1.08998 * 109.46950 * 51.95139 * 28 27 25 51 51 H 1.08005 * 120.00143 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2630 2.0726 -1.1973 5 6 2.7203 3.3768 -1.1972 6 6 2.9558 4.0267 0.0002 7 6 2.7242 3.3756 1.1971 8 6 2.9754 4.0859 2.5022 9 6 1.7201 4.7977 2.9365 10 8 0.7198 4.7340 2.2536 11 7 1.7086 5.5041 4.0841 12 6 0.4881 6.1956 4.5065 13 1 -0.0410 6.6023 3.6447 14 6 -0.4310 5.2424 5.3154 15 6 -1.2210 6.2437 6.1944 16 7 -0.2439 7.2906 6.5451 17 6 -0.3114 8.1109 7.6395 18 1 0.5953 8.4304 8.1315 19 6 -1.5452 8.5317 8.1164 20 7 -1.6479 9.0220 9.3336 21 14 -3.0598 8.4024 7.0307 22 1 -3.6641 7.0544 7.1827 23 1 -4.0473 9.4358 7.4334 24 1 -2.6721 8.6139 5.6130 25 6 0.8153 7.3074 5.5256 26 1 1.7811 7.1109 5.9913 27 6 0.8399 8.6664 4.8232 28 6 1.2037 9.7563 5.8335 29 6 2.2626 2.0724 1.1970 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0830 1.5635 -2.1327 36 1 2.8970 3.8872 -2.1325 37 1 3.3164 5.0447 0.0001 38 1 3.2625 3.3591 3.2620 39 1 3.7781 4.8119 2.3722 40 1 2.5086 5.5548 4.6305 41 1 -1.0995 4.6905 4.6546 42 1 0.1572 4.5612 5.9303 43 1 -2.0497 6.6719 5.6305 44 1 -1.5898 5.7503 7.0935 45 1 -2.5101 9.3163 9.6667 46 1 1.5816 8.6492 4.0245 47 1 -0.1433 8.8753 4.4015 48 1 1.3612 10.6991 5.3098 49 1 0.3922 9.8710 6.5522 50 1 2.1167 9.4751 6.3583 51 1 2.0824 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087628729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:21 Heat of formation + Delta-G solvation = -6.645735 kcal Electronic energy + Delta-G solvation = -28438.408362 eV Core-core repulsion = 24723.381504 eV Total energy + Delta-G solvation = -3715.026858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.22184 -39.27016 -37.90713 -34.63554 -34.13991 -32.65225 -32.45835 -32.04738 -29.79247 -29.43202 -27.86325 -26.79135 -24.27228 -24.11718 -22.38896 -22.09324 -21.34351 -20.42253 -20.20639 -19.24613 -17.05032 -16.97297 -16.67226 -16.03182 -15.94848 -15.26380 -15.10866 -14.82410 -14.48591 -13.95225 -13.82317 -13.69701 -13.57074 -13.20775 -13.15572 -13.13653 -12.87171 -12.42850 -12.26644 -12.22050 -12.08357 -11.90996 -11.80433 -11.46246 -11.38026 -11.07370 -11.03255 -10.94287 -10.82913 -10.64457 -10.42993 -10.26182 -10.11217 -9.90647 -9.76548 -9.47006 -8.90424 -8.78640 -8.72895 -8.55073 -6.90301 -6.01142 -3.41957 1.20225 1.28349 2.73124 3.23035 3.34876 3.46894 3.52066 3.71703 4.44103 4.51761 4.52419 4.67709 4.83305 4.91673 4.95874 5.05722 5.06595 5.13395 5.18825 5.23346 5.26888 5.28760 5.32362 5.38710 5.45581 5.61352 5.65931 5.67513 5.82044 5.90756 5.92289 5.94357 5.97813 6.01610 6.12473 6.20344 6.32932 6.35442 6.43171 6.44487 6.48466 6.56533 6.63822 6.66118 6.76792 6.79842 6.88327 7.05649 7.41191 7.64084 7.85008 8.29327 8.35533 8.80438 9.62773 10.18363 11.14262 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.002619 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.153721 B =10686.922936 C =11438.559952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.104 4.104 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.718 5.718 12 C 0.135 3.865 13 H 0.093 0.907 14 C -0.140 4.140 15 C 0.117 3.883 16 N -0.598 5.598 17 C -0.235 4.235 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.906 5.906 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.156 3.844 26 H 0.045 0.955 27 C -0.124 4.124 28 C -0.151 4.151 29 C -0.102 4.102 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.264 0.736 46 H 0.041 0.959 47 H 0.054 0.946 48 H 0.029 0.971 49 H 0.095 0.905 50 H 0.041 0.959 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -14.472 -18.106 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.369 5.369 12 C 0.030 3.970 13 H 0.111 0.889 14 C -0.179 4.179 15 C -0.008 4.008 16 N -0.325 5.325 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.168 4.168 20 N -0.548 5.548 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.230 1.230 24 H -0.197 1.197 25 C 0.049 3.951 26 H 0.063 0.937 27 C -0.163 4.163 28 C -0.208 4.208 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.114 0.886 50 H 0.060 0.940 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.431 -14.374 -18.375 25.555 hybrid contribution -0.634 0.165 -0.275 0.710 sum 9.797 -14.209 -18.650 25.411 Atomic orbital electron populations 1.21753 0.94621 1.01567 1.02571 1.20531 0.96328 0.92619 1.02603 1.19836 0.99034 0.96302 0.93105 1.20974 1.00466 0.95089 0.97355 1.21058 0.99690 0.94901 0.97836 1.20959 1.00433 0.99395 0.92011 1.19252 0.99055 0.93945 0.93645 1.20701 0.97081 1.00403 0.96239 1.20447 0.89827 0.79108 0.80783 1.90727 1.35184 1.61211 1.53794 1.46061 1.15186 1.51894 1.23744 1.22089 0.84888 0.92736 0.97317 0.88950 1.23114 0.98760 0.97760 0.98312 1.21912 0.92717 0.89207 0.97001 1.44696 1.25410 1.37740 1.24621 1.18443 0.94079 1.23012 1.00693 0.89485 1.25378 0.97802 0.97319 0.96348 1.69791 1.24990 1.45008 1.15006 0.86866 0.83387 0.76836 0.81749 1.21174 1.22953 1.19662 1.21242 0.93747 0.91676 0.88410 0.93714 1.21884 1.00164 0.96789 0.97464 1.21914 1.03095 0.95926 0.99886 1.20835 0.99243 0.94369 0.97596 0.92571 0.92490 0.92294 0.91209 0.91121 0.86411 0.86188 0.86314 0.88006 0.87974 0.76630 0.91465 0.91101 0.95898 0.92334 0.92588 0.94029 0.92696 0.95236 0.88613 0.93987 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.08 -0.84 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 7 C -0.06 -0.65 4.37 -104.63 -0.46 -1.10 16 8 C -0.10 -0.98 5.83 -29.03 -0.17 -1.15 16 9 C 0.51 6.87 7.82 -10.99 -0.09 6.78 16 10 O -0.53 -9.44 15.76 5.55 0.09 -9.35 16 11 N -0.72 -9.34 5.20 -52.03 -0.27 -9.61 16 12 C 0.13 2.25 2.76 -66.09 -0.18 2.06 16 13 H 0.09 1.71 7.41 -51.93 -0.38 1.32 16 14 C -0.14 -2.45 6.77 -24.59 -0.17 -2.62 16 15 C 0.12 2.50 4.97 -2.53 -0.01 2.49 16 16 N -0.60 -13.61 2.71 -162.57 -0.44 -14.05 16 17 C -0.23 -6.20 7.35 -15.06 -0.11 -6.31 16 18 H 0.09 2.46 7.81 -52.49 -0.41 2.05 16 19 C 0.03 0.89 5.46 -17.43 -0.10 0.79 16 20 N -0.91 -26.98 13.97 55.49 0.78 -26.20 16 21 Si 0.88 22.35 24.63 -169.99 -4.19 18.17 16 22 H -0.28 -7.09 7.10 56.52 0.40 -6.69 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.27 -6.83 6.85 56.52 0.39 -6.44 16 25 C 0.16 2.91 3.02 -66.95 -0.20 2.71 16 26 H 0.05 0.80 7.69 -51.93 -0.40 0.41 16 27 C -0.12 -2.27 5.49 -26.73 -0.15 -2.41 16 28 C -0.15 -2.89 9.02 37.16 0.34 -2.56 16 29 C -0.10 -1.11 9.36 -39.58 -0.37 -1.48 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.40 4.12 8.31 -40.82 -0.34 3.78 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.53 5.32 -51.93 -0.28 0.25 16 44 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 2.20 5.60 -51.93 -0.29 1.91 16 50 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 51 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 402.35 15.07 6.06 6.06 Total: -1.00 -32.12 402.35 -9.98 -42.10 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.84 Total: 3.43 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.17 Total: -10.55 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.06 Total: -49.86 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.19 Total: 18.17 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.12 -9.98 -42.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.457 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds