Wall clock time and date at job start Tue Mar 31 2020 16:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47319 * 2 1 4 4 C 1.38240 * 120.00138 * 89.99985 * 3 2 1 5 5 C 1.38232 * 120.00048 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00026 * 359.97289 * 5 4 3 7 7 C 1.50698 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47137 * 90.00176 * 7 6 5 9 9 O 1.21282 * 120.00198 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99615 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.63863 * 325.69874 * 11 10 8 13 13 C 1.55146 * 110.72121 * 88.84491 * 11 10 8 14 14 C 1.55392 * 101.36729 * 153.94223 * 13 11 10 15 15 N 1.47427 * 104.87197 * 323.02093 * 14 13 11 16 16 C 1.36941 * 125.64276 * 204.09344 * 15 14 13 17 17 H 1.08003 * 119.99689 * 165.42412 * 16 15 14 18 18 C 1.38811 * 120.00050 * 345.42334 * 16 15 14 19 19 N 1.31618 * 120.00449 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47116 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47396 * 119.99897 * 20 18 16 23 23 H 1.48497 * 109.47426 * 239.99917 * 20 18 16 24 24 C 1.47016 * 108.70257 * 24.12611 * 15 14 13 25 25 H 1.09000 * 109.88352 * 239.51916 * 24 15 14 26 26 C 1.53008 * 110.00679 * 118.43367 * 24 15 14 27 27 C 1.53003 * 109.46900 * 176.90082 * 26 24 15 28 28 C 1.38231 * 120.00199 * 0.28416 * 6 5 4 29 29 C 1.38237 * 120.00083 * 270.02284 * 3 2 1 30 30 H 1.09005 * 109.46783 * 299.99979 * 1 2 3 31 31 H 1.09005 * 109.47303 * 60.00126 * 1 2 3 32 32 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46783 * 240.00021 * 2 1 3 34 34 H 1.09003 * 109.46806 * 120.00033 * 2 1 3 35 35 H 1.08003 * 119.99816 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00040 * 180.02562 * 5 4 3 37 37 H 1.09006 * 109.47328 * 330.00348 * 7 6 5 38 38 H 1.09000 * 109.47087 * 210.00739 * 7 6 5 39 39 H 0.97000 * 120.00313 * 0.02562 * 10 8 7 40 40 H 1.08999 * 111.00916 * 272.11354 * 13 11 10 41 41 H 1.09005 * 111.00735 * 35.97070 * 13 11 10 42 42 H 1.09000 * 110.34653 * 204.16204 * 14 13 11 43 43 H 1.09007 * 110.43965 * 81.91912 * 14 13 11 44 44 H 0.96993 * 120.00544 * 180.02562 * 19 18 16 45 45 H 1.08990 * 109.47004 * 296.89939 * 26 24 15 46 46 H 1.09004 * 109.47092 * 56.90288 * 26 24 15 47 47 H 1.09003 * 109.47131 * 305.57552 * 27 26 24 48 48 H 1.09006 * 109.46932 * 65.57676 * 27 26 24 49 49 H 1.08998 * 109.47157 * 185.57270 * 27 26 24 50 50 H 1.07994 * 120.00644 * 179.72783 * 28 6 5 51 51 H 1.08001 * 119.99963 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 0.0000 8 6 4.9660 5.4459 0.0006 9 8 5.5716 4.3951 0.0006 10 7 5.6408 6.6126 0.0002 11 6 7.1059 6.6114 0.0003 12 1 7.4893 5.7686 0.5754 13 6 7.6548 6.5811 -1.4505 14 6 9.0438 7.2530 -1.2665 15 7 8.8243 8.3056 -0.2578 16 6 9.5859 9.4330 -0.1022 17 1 9.2197 10.2536 0.4969 18 6 10.8286 9.5212 -0.7145 19 7 11.2747 8.5214 -1.4451 20 14 11.8677 11.0588 -0.5016 21 1 11.1457 12.0287 0.3606 22 1 13.1603 10.6985 0.1345 23 1 12.1234 11.6713 -1.8300 24 6 7.6529 7.9441 0.5536 25 1 6.8916 8.7198 0.4719 26 6 8.0634 7.7704 2.0173 27 6 6.8238 7.4706 2.8625 28 6 2.7201 3.3770 -1.1972 29 6 2.2623 2.0726 -1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9045 3.8845 2.1325 37 1 3.0958 5.9615 0.8898 38 1 3.0964 5.9612 -0.8902 39 1 5.1565 7.4531 -0.0001 40 1 7.7571 5.5566 -1.8083 41 1 7.0233 7.1658 -2.1195 42 1 9.3800 7.6919 -2.2059 43 1 9.7728 6.5276 -0.9052 44 1 12.1431 8.5828 -1.8727 45 1 8.7689 6.9439 2.1011 46 1 8.5334 8.6869 2.3740 47 1 6.0774 8.2485 2.7015 48 1 6.4106 6.5047 2.5716 49 1 7.1002 7.4448 3.9165 50 1 2.8967 3.8872 -2.1324 51 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087744117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:24 Heat of formation + Delta-G solvation = -9.583111 kcal Electronic energy + Delta-G solvation = -28172.897086 eV Core-core repulsion = 24457.742854 eV Total energy + Delta-G solvation = -3715.154232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11862 -39.16757 -37.62789 -34.77659 -33.95769 -32.75315 -31.86577 -31.24195 -30.99759 -29.03071 -27.53493 -26.27002 -24.43038 -23.42907 -22.82903 -22.18245 -20.93296 -20.38020 -20.10963 -19.40671 -16.90838 -16.77476 -16.42269 -15.96705 -15.71808 -15.19767 -14.78905 -14.63480 -14.05687 -13.94148 -13.89722 -13.82747 -13.73320 -13.41208 -13.19538 -12.99606 -12.72009 -12.29640 -12.18393 -11.94295 -11.87447 -11.85135 -11.63654 -11.40075 -11.13616 -11.00630 -10.95246 -10.90281 -10.84143 -10.60297 -10.43859 -10.25708 -10.05363 -9.75238 -9.66247 -9.58360 -8.96117 -8.63896 -8.57997 -8.54102 -6.81180 -5.76152 -3.12601 1.23130 1.36518 2.85276 3.33735 3.38152 3.43841 3.45846 3.79548 4.47288 4.49937 4.62352 4.67975 4.86192 4.92006 5.03155 5.09620 5.17781 5.27935 5.32477 5.34053 5.36139 5.42444 5.49648 5.54164 5.54861 5.61899 5.70990 5.75386 5.81290 5.85988 5.87535 5.98808 6.00409 6.06064 6.23741 6.32779 6.33049 6.40883 6.46851 6.51774 6.53038 6.58826 6.69225 6.75679 6.93653 6.95561 7.16329 7.51045 7.61125 7.77503 7.79480 8.25702 8.48230 9.17347 9.78389 10.46455 11.35805 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.002206 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.396537 B =12690.739832 C =13162.227712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.512 3.488 9 O -0.534 6.534 10 N -0.716 5.716 11 C 0.139 3.861 12 H 0.091 0.909 13 C -0.156 4.156 14 C 0.174 3.826 15 N -0.594 5.594 16 C -0.227 4.227 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.161 3.839 25 H 0.034 0.966 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.253 0.747 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.044 0.956 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.953 -10.958 3.431 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.144 4.144 8 C 0.297 3.703 9 O -0.410 6.410 10 N -0.367 5.367 11 C 0.035 3.965 12 H 0.109 0.891 13 C -0.196 4.196 14 C 0.049 3.951 15 N -0.319 5.319 16 C -0.355 4.355 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.740 3.260 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.053 3.947 25 H 0.052 0.948 26 C -0.172 4.172 27 C -0.204 4.204 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.281 -11.631 3.345 24.481 hybrid contribution 0.549 1.260 0.129 1.380 sum -20.732 -10.371 3.474 23.440 Atomic orbital electron populations 1.21746 0.94841 1.01545 1.02167 1.20535 0.96036 0.92870 1.02809 1.19853 0.99442 0.96062 0.93279 1.20933 1.00438 0.94777 0.97408 1.20947 0.98803 0.94898 0.97371 1.19263 0.98882 0.94815 0.93544 1.20702 0.93161 0.95497 1.05082 1.20409 0.89297 0.84042 0.76518 1.90726 1.70194 1.31160 1.48926 1.46097 1.07687 1.08090 1.74836 1.22074 0.77772 0.99065 0.97634 0.89062 1.23489 1.00370 1.00441 0.95307 1.21515 0.89682 0.89517 0.94396 1.44448 1.31070 1.22606 1.33732 1.18982 0.96377 0.92030 1.28141 0.90660 1.24922 0.96879 0.97879 1.00473 1.69937 1.19635 1.30666 1.35996 0.86082 0.80406 0.82122 0.77361 1.20448 1.21703 1.21761 1.21074 0.91074 0.92232 0.90323 0.94810 1.22014 0.96827 1.01980 0.96359 1.21765 0.98678 1.00773 0.99161 1.20961 0.98722 0.94892 0.97412 1.20941 1.00395 0.94753 0.97424 0.92605 0.92587 0.92534 0.91112 0.91129 0.86333 0.86296 0.88153 0.88122 0.76928 0.91970 0.92123 0.90862 0.95432 0.93664 0.92415 0.91750 0.93463 0.93327 0.93735 0.86253 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.66 6.06 -27.89 -0.17 -0.83 16 3 C -0.09 -0.87 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 5 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 6 C -0.06 -0.75 4.37 -104.63 -0.46 -1.20 16 7 C -0.10 -1.05 5.83 -29.04 -0.17 -1.22 16 8 C 0.51 7.27 7.82 -10.99 -0.09 7.18 16 9 O -0.53 -9.94 15.72 5.56 0.09 -9.85 16 10 N -0.72 -9.98 4.89 -52.03 -0.25 -10.23 16 11 C 0.14 2.49 1.96 -66.10 -0.13 2.36 16 12 H 0.09 1.81 7.27 -51.93 -0.38 1.44 16 13 C -0.16 -3.07 6.80 -24.33 -0.17 -3.23 16 14 C 0.17 4.22 5.43 -2.27 -0.01 4.20 16 15 N -0.59 -14.60 3.13 -162.26 -0.51 -15.11 16 16 C -0.23 -6.11 9.76 -15.06 -0.15 -6.26 16 17 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 18 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 19 N -0.92 -26.59 10.57 55.49 0.59 -26.01 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.16 3.16 2.93 -66.95 -0.20 2.97 16 25 H 0.03 0.64 7.70 -51.93 -0.40 0.25 16 26 C -0.13 -2.45 5.42 -26.73 -0.14 -2.59 16 27 C -0.15 -2.13 9.57 37.16 0.36 -1.77 16 28 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 29 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.40 4.48 8.34 -40.82 -0.34 4.14 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.96 6.93 -51.93 -0.36 1.60 16 43 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 46 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.71 7.39 -51.93 -0.38 0.33 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 51 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -32.13 409.82 -11.04 -43.17 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.99 Total: 3.99 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.12 Total: -8.89 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.18 Total: -51.35 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.13 -11.04 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087744117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.588 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds