Wall clock time and date at job start Tue Mar 31 2020 16:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47319 * 2 1 4 4 C 1.38240 * 120.00138 * 89.99985 * 3 2 1 5 5 C 1.38232 * 120.00048 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00026 * 359.97289 * 5 4 3 7 7 C 1.50698 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47137 * 90.00176 * 7 6 5 9 9 O 1.21282 * 120.00198 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99615 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.63863 * 325.69874 * 11 10 8 13 13 C 1.55146 * 110.72121 * 88.84491 * 11 10 8 14 14 C 1.55392 * 101.36729 * 153.94223 * 13 11 10 15 15 N 1.47427 * 104.87197 * 323.02093 * 14 13 11 16 16 C 1.36941 * 125.64276 * 204.09344 * 15 14 13 17 17 H 1.08003 * 119.99689 * 165.42412 * 16 15 14 18 18 C 1.38811 * 120.00050 * 345.42334 * 16 15 14 19 19 N 1.31618 * 120.00449 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47116 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47396 * 119.99897 * 20 18 16 23 23 H 1.48497 * 109.47426 * 239.99917 * 20 18 16 24 24 C 1.47016 * 108.70257 * 24.12611 * 15 14 13 25 25 H 1.09000 * 109.88352 * 239.51916 * 24 15 14 26 26 C 1.53008 * 110.00679 * 118.43367 * 24 15 14 27 27 C 1.53003 * 109.46900 * 176.90082 * 26 24 15 28 28 C 1.38231 * 120.00199 * 0.28416 * 6 5 4 29 29 C 1.38237 * 120.00083 * 270.02284 * 3 2 1 30 30 H 1.09005 * 109.46783 * 299.99979 * 1 2 3 31 31 H 1.09005 * 109.47303 * 60.00126 * 1 2 3 32 32 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46783 * 240.00021 * 2 1 3 34 34 H 1.09003 * 109.46806 * 120.00033 * 2 1 3 35 35 H 1.08003 * 119.99816 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00040 * 180.02562 * 5 4 3 37 37 H 1.09006 * 109.47328 * 330.00348 * 7 6 5 38 38 H 1.09000 * 109.47087 * 210.00739 * 7 6 5 39 39 H 0.97000 * 120.00313 * 0.02562 * 10 8 7 40 40 H 1.08999 * 111.00916 * 272.11354 * 13 11 10 41 41 H 1.09005 * 111.00735 * 35.97070 * 13 11 10 42 42 H 1.09000 * 110.34653 * 204.16204 * 14 13 11 43 43 H 1.09007 * 110.43965 * 81.91912 * 14 13 11 44 44 H 0.96993 * 120.00544 * 180.02562 * 19 18 16 45 45 H 1.08990 * 109.47004 * 296.89939 * 26 24 15 46 46 H 1.09004 * 109.47092 * 56.90288 * 26 24 15 47 47 H 1.09003 * 109.47131 * 305.57552 * 27 26 24 48 48 H 1.09006 * 109.46932 * 65.57676 * 27 26 24 49 49 H 1.08998 * 109.47157 * 185.57270 * 27 26 24 50 50 H 1.07994 * 120.00644 * 179.72783 * 28 6 5 51 51 H 1.08001 * 119.99963 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 0.0000 8 6 4.9660 5.4459 0.0006 9 8 5.5716 4.3951 0.0006 10 7 5.6408 6.6126 0.0002 11 6 7.1059 6.6114 0.0003 12 1 7.4893 5.7686 0.5754 13 6 7.6548 6.5811 -1.4505 14 6 9.0438 7.2530 -1.2665 15 7 8.8243 8.3056 -0.2578 16 6 9.5859 9.4330 -0.1022 17 1 9.2197 10.2536 0.4969 18 6 10.8286 9.5212 -0.7145 19 7 11.2747 8.5214 -1.4451 20 14 11.8677 11.0588 -0.5016 21 1 11.1457 12.0287 0.3606 22 1 13.1603 10.6985 0.1345 23 1 12.1234 11.6713 -1.8300 24 6 7.6529 7.9441 0.5536 25 1 6.8916 8.7198 0.4719 26 6 8.0634 7.7704 2.0173 27 6 6.8238 7.4706 2.8625 28 6 2.7201 3.3770 -1.1972 29 6 2.2623 2.0726 -1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9045 3.8845 2.1325 37 1 3.0958 5.9615 0.8898 38 1 3.0964 5.9612 -0.8902 39 1 5.1565 7.4531 -0.0001 40 1 7.7571 5.5566 -1.8083 41 1 7.0233 7.1658 -2.1195 42 1 9.3800 7.6919 -2.2059 43 1 9.7728 6.5276 -0.9052 44 1 12.1431 8.5828 -1.8727 45 1 8.7689 6.9439 2.1011 46 1 8.5334 8.6869 2.3740 47 1 6.0774 8.2485 2.7015 48 1 6.4106 6.5047 2.5716 49 1 7.1002 7.4448 3.9165 50 1 2.8967 3.8872 -2.1324 51 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087744117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:23 Heat of formation + Delta-G solvation = -26.815663 kcal Electronic energy + Delta-G solvation = -28173.644345 eV Core-core repulsion = 24457.742854 eV Total energy + Delta-G solvation = -3715.901491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20887 -40.20728 -39.10319 -35.64959 -35.41012 -34.26350 -33.50297 -32.18204 -31.76140 -30.76982 -28.60727 -27.60919 -26.24794 -24.29299 -23.60003 -23.52104 -22.28412 -21.64119 -21.43948 -20.79883 -18.76037 -17.95834 -17.53043 -16.91438 -16.76897 -16.58753 -16.03766 -15.82848 -15.65817 -15.36277 -15.14935 -14.67069 -14.53288 -14.51056 -14.30057 -14.16783 -13.81046 -13.68935 -13.54216 -13.24468 -12.95152 -12.92952 -12.84136 -12.70668 -12.56530 -12.50489 -12.19878 -12.03915 -12.00749 -11.96379 -11.87830 -11.67196 -11.62338 -11.57928 -11.35008 -10.85384 -10.68334 -9.92611 -9.74720 -9.36766 -8.83173 -7.85816 -5.23924 0.44235 0.57679 1.46544 1.47566 1.57637 1.74936 2.22222 2.51627 2.94291 3.34358 3.58799 3.74505 3.85988 3.91102 3.94632 3.97777 4.14549 4.19339 4.21730 4.24469 4.38249 4.42146 4.52270 4.53292 4.61578 4.62881 4.66214 4.66621 4.76328 4.76887 4.81759 4.90157 5.02208 5.08118 5.10267 5.16684 5.20508 5.22844 5.27059 5.33486 5.40185 5.46903 5.50420 5.56118 5.57926 5.70174 5.71566 5.73207 5.77730 6.18509 6.23263 6.68325 7.08670 7.38323 7.76578 8.43971 9.25716 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.002206 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.396537 B =12690.739832 C =13162.227712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.083 4.083 7 C -0.093 4.093 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.159 3.841 12 H 0.071 0.929 13 C -0.141 4.141 14 C 0.182 3.818 15 N -0.613 5.613 16 C -0.229 4.229 17 H 0.084 0.916 18 C -0.066 4.066 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.297 1.297 23 H -0.293 1.293 24 C 0.159 3.841 25 H 0.056 0.944 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.118 4.118 29 C -0.131 4.131 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.415 0.585 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.040 0.960 43 H -0.009 1.009 44 H 0.246 0.754 45 H 0.031 0.969 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.127 0.873 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.878 -10.254 4.543 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.134 4.134 6 C -0.084 4.084 7 C -0.133 4.133 8 C 0.302 3.698 9 O -0.460 6.460 10 N -0.355 5.355 11 C 0.053 3.947 12 H 0.089 0.911 13 C -0.181 4.181 14 C 0.056 3.944 15 N -0.338 5.338 16 C -0.358 4.358 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.224 1.224 23 H -0.220 1.220 24 C 0.052 3.948 25 H 0.073 0.927 26 C -0.167 4.167 27 C -0.190 4.190 28 C -0.136 4.136 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.145 0.855 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.275 -10.896 4.485 26.983 hybrid contribution 1.419 0.969 -0.203 1.730 sum -22.856 -9.926 4.281 25.284 Atomic orbital electron populations 1.21714 0.93840 1.02370 1.01981 1.20583 0.96846 0.91539 1.03272 1.20177 0.98888 0.97132 0.93129 1.21223 1.00353 0.94913 0.98275 1.21217 0.98897 0.95386 0.97877 1.19493 0.99433 0.95732 0.93696 1.20724 0.89287 0.95413 1.07826 1.21153 0.90961 0.82932 0.74770 1.90719 1.71514 1.32858 1.50904 1.45866 1.05677 1.09315 1.74690 1.21554 0.80317 0.97303 0.95562 0.91126 1.23291 0.97759 0.99978 0.97031 1.21209 0.91551 0.88883 0.92781 1.44689 1.32023 1.22096 1.34949 1.19353 0.96537 0.92938 1.26971 0.89815 1.25744 0.98391 1.00868 1.00941 1.70151 1.19637 1.32715 1.37426 0.85053 0.78386 0.79053 0.77111 1.18598 1.22397 1.22043 1.21272 0.89714 0.93474 0.90347 0.92691 1.21910 0.98257 1.00228 0.96296 1.21643 0.96932 1.01470 0.98990 1.21214 0.99042 0.95439 0.97905 1.21214 1.00441 0.94876 0.98312 0.92732 0.92819 0.91210 0.90724 0.90611 0.84845 0.85212 0.85096 0.85483 0.74791 0.92001 0.90658 0.94158 0.99139 0.94436 0.95004 0.93220 0.91142 0.93281 0.92401 0.85540 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.09 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.77 5.13 -19.87 -0.10 -1.88 16 4 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 5 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 6 C -0.08 -1.75 4.37 -19.87 -0.09 -1.84 16 7 C -0.09 -1.56 5.83 29.10 0.17 -1.39 16 8 C 0.51 13.39 7.82 87.66 0.69 14.08 16 9 O -0.58 -21.11 15.72 -3.04 -0.05 -21.16 16 10 N -0.70 -17.71 4.89 -436.93 -2.14 -19.84 16 11 C 0.16 5.55 1.96 46.17 0.09 5.64 16 12 H 0.07 2.82 7.27 -2.39 -0.02 2.80 16 13 C -0.14 -5.55 6.80 32.15 0.22 -5.33 16 14 C 0.18 9.17 5.43 87.02 0.47 9.64 16 15 N -0.61 -30.54 3.13 -667.28 -2.09 -32.63 16 16 C -0.23 -12.42 9.76 84.03 0.82 -11.60 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.74 5.47 84.86 0.46 -3.28 16 19 N -0.95 -57.52 10.57 21.65 0.23 -57.29 16 20 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 C 0.16 6.06 2.93 45.34 0.13 6.20 16 25 H 0.06 1.92 7.70 -2.39 -0.02 1.90 16 26 C -0.13 -4.61 5.42 30.60 0.17 -4.45 16 27 C -0.13 -3.50 9.57 71.98 0.69 -2.81 16 28 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 29 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 34 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.13 1.43 8.09 -2.38 -0.02 1.41 16 38 H 0.13 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.41 7.68 8.34 -92.71 -0.77 6.91 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 42 H 0.04 2.27 6.93 -2.39 -0.02 2.25 16 43 H -0.01 -0.54 8.06 -2.38 -0.02 -0.56 16 44 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 46 H 0.05 1.93 7.91 -2.38 -0.02 1.91 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.30 7.39 -2.38 -0.02 1.29 16 49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 51 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.82 409.82 3.58 -69.25 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.12 Total: 22.32 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.48 Total: -8.09 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.00 Total: -109.77 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.82 3.58 -69.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087744117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.431 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds