Wall clock time and date at job start Tue Mar 31 2020 16:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47437 * 2 1 4 4 C 1.38238 * 120.00043 * 89.99624 * 3 2 1 5 5 C 1.38230 * 120.00096 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00163 * 359.95737 * 5 4 3 7 7 C 1.50701 * 120.00216 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47419 * 120.00264 * 7 6 5 10 10 C 1.50703 * 109.47064 * 240.00219 * 7 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 7 14 14 H 1.09001 * 110.63644 * 328.13721 * 13 12 10 15 15 C 1.55154 * 110.71945 * 91.47492 * 13 12 10 16 16 C 1.54914 * 101.57982 * 153.86820 * 15 13 12 17 17 N 1.47422 * 104.83031 * 322.98822 * 16 15 13 18 18 C 1.36939 * 125.64797 * 204.09791 * 17 16 15 19 19 H 1.07998 * 119.99962 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99908 * 0.03654 * 18 17 16 21 21 N 1.31620 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47061 * 90.00160 * 22 20 18 24 24 H 1.48500 * 109.47078 * 210.00167 * 22 20 18 25 25 H 1.48505 * 109.47022 * 330.00109 * 22 20 18 26 26 C 1.47019 * 108.70491 * 24.12944 * 17 16 15 27 27 H 1.09000 * 109.88489 * 239.52216 * 26 17 16 28 28 C 1.53002 * 109.88342 * 118.35853 * 26 17 16 29 29 C 1.38236 * 119.99764 * 0.27659 * 6 5 4 30 30 C 1.38230 * 120.00201 * 269.98568 * 3 2 1 31 31 H 1.09001 * 109.46755 * 299.99857 * 1 2 3 32 32 H 1.08996 * 109.47183 * 59.99526 * 1 2 3 33 33 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47229 * 240.00268 * 2 1 3 35 35 H 1.09002 * 109.47115 * 120.00057 * 2 1 3 36 36 H 1.08003 * 119.99697 * 359.97438 * 4 3 2 37 37 H 1.08002 * 119.99752 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 39 39 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 40 40 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 41 41 H 0.97005 * 119.99463 * 359.97438 * 12 10 7 42 42 H 1.09003 * 111.00106 * 271.93541 * 15 13 12 43 43 H 1.08994 * 111.00903 * 35.79216 * 15 13 12 44 44 H 1.09004 * 110.36694 * 204.14994 * 16 15 13 45 45 H 1.08998 * 110.46018 * 81.87316 * 16 15 13 46 46 H 0.96995 * 119.99776 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.46881 * 302.19653 * 28 26 17 48 48 H 1.09001 * 109.47147 * 62.19231 * 28 26 17 49 49 H 1.08997 * 109.46964 * 182.19430 * 28 26 17 50 50 H 1.08004 * 120.00235 * 179.72447 * 29 6 5 51 51 H 1.08003 * 119.99913 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9539 4.0274 0.0001 7 6 3.4563 5.4482 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8044 5.5125 -0.7207 10 6 2.4639 6.3319 -0.7107 11 8 1.4489 5.8549 -1.1723 12 7 2.7049 7.6522 -0.8344 13 6 1.7399 8.5114 -1.5249 14 1 1.2322 7.9601 -2.3163 15 6 0.7170 9.1053 -0.5208 16 6 0.2924 10.4081 -1.2436 17 7 1.5239 10.9015 -1.8864 18 6 1.7769 12.2017 -2.2341 19 1 2.7140 12.4626 -2.7031 20 6 0.8288 13.1842 -1.9834 21 7 -0.3130 12.8662 -1.4111 22 14 1.1736 14.9577 -2.4583 23 1 0.6969 15.2008 -3.8435 24 1 0.4637 15.8674 -1.5236 25 1 2.6344 15.2146 -2.3853 26 6 2.4351 9.7665 -2.0931 27 1 3.3722 9.9424 -1.5649 28 6 2.7041 9.5806 -3.5878 29 6 2.7190 3.3773 -1.1970 30 6 2.2631 2.0723 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9027 3.8851 2.1325 38 1 5.5222 4.8733 -0.2066 39 1 4.6836 5.1698 -1.7484 40 1 5.1680 6.5401 -0.7203 41 1 3.5169 8.0336 -0.4655 42 1 -0.1339 8.4369 -0.3886 43 1 1.1910 9.3258 0.4355 44 1 -0.0783 11.1378 -0.5236 45 1 -0.4689 10.1965 -1.9944 46 1 -0.9752 13.5528 -1.2356 47 1 1.7601 9.4248 -4.1102 48 1 3.1949 10.4704 -3.9821 49 1 3.3487 8.7142 -3.7360 50 1 2.8951 3.8878 -2.1324 51 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088924160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:03 Heat of formation + Delta-G solvation = -4.409945 kcal Electronic energy + Delta-G solvation = -28305.863461 eV Core-core repulsion = 24590.933555 eV Total energy + Delta-G solvation = -3714.929907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.36456 -39.10904 -37.56786 -35.15460 -34.05299 -32.83876 -31.80432 -30.97939 -30.36194 -28.88733 -28.34953 -25.38370 -24.58156 -23.99547 -23.02451 -22.79585 -21.01173 -20.23408 -20.07213 -19.37533 -16.95257 -16.81685 -16.51093 -15.87731 -15.64076 -15.11573 -14.77257 -14.58558 -14.07073 -13.94481 -13.87543 -13.75981 -13.55033 -13.30097 -13.24876 -12.97289 -12.76447 -12.45252 -12.15799 -12.08612 -11.86013 -11.75229 -11.62583 -11.55157 -11.31792 -11.14329 -10.92027 -10.90394 -10.85878 -10.82516 -10.55140 -10.39504 -10.10224 -9.75012 -9.61208 -9.47726 -8.91551 -8.68026 -8.57899 -8.57180 -6.88254 -5.66196 -3.09168 1.24924 1.39730 2.83069 3.33287 3.38857 3.43960 3.45699 3.77820 4.42193 4.47096 4.60980 4.65512 4.78082 4.91575 4.97509 5.07374 5.12916 5.15136 5.30188 5.33852 5.39345 5.41862 5.44411 5.51437 5.56556 5.62701 5.64793 5.65452 5.75399 5.83495 5.90098 5.93735 6.01097 6.03961 6.12403 6.25824 6.31322 6.36040 6.36513 6.54086 6.54614 6.57462 6.61799 6.72156 6.87335 6.95566 7.12608 7.51733 7.61725 7.76801 7.84858 8.33981 8.46064 9.19784 9.80778 10.44776 11.37049 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.002262 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.061725 B =12378.026283 C =12746.820672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.068 4.068 7 C -0.073 4.073 8 H 0.102 0.898 9 C -0.140 4.140 10 C 0.516 3.484 11 O -0.534 6.534 12 N -0.715 5.715 13 C 0.135 3.865 14 H 0.093 0.907 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.155 3.845 27 H 0.035 0.965 28 C -0.155 4.155 29 C -0.079 4.079 30 C -0.120 4.120 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.014 0.986 46 H 0.252 0.748 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.037 0.963 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 -22.683 4.769 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.068 4.068 7 C -0.094 4.094 8 H 0.120 0.880 9 C -0.198 4.198 10 C 0.301 3.699 11 O -0.410 6.410 12 N -0.365 5.365 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.321 5.321 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.047 3.953 27 H 0.053 0.947 28 C -0.214 4.214 29 C -0.097 4.097 30 C -0.138 4.138 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.968 -22.790 4.439 24.547 hybrid contribution 0.444 1.229 -0.135 1.313 sum 8.412 -21.561 4.304 23.541 Atomic orbital electron populations 1.21752 0.94732 1.01504 1.02500 1.20527 0.96227 0.92790 1.02536 1.19862 0.99180 0.96200 0.93278 1.20897 1.00845 0.94909 0.97369 1.20968 0.99669 0.94925 0.97179 1.19287 1.00086 0.93855 0.93574 1.20312 0.95378 0.92236 1.01503 0.87958 1.21793 0.94374 1.02749 1.00859 1.20368 0.87094 0.82468 0.79991 1.90715 1.27781 1.74245 1.48240 1.46065 1.24590 1.07598 1.58287 1.22141 0.89574 0.90168 0.95043 0.88933 1.23387 0.98049 0.99460 0.98348 1.21947 0.87938 0.91364 0.96002 1.44494 1.14865 1.02252 1.70440 1.19018 1.00970 0.81847 1.32972 0.90474 1.24798 0.96298 0.98240 1.01328 1.69797 1.07558 1.31603 1.47957 0.86082 0.77352 0.84369 0.77732 1.21652 1.21678 1.20725 1.20997 0.93405 0.87248 0.93651 0.94725 1.22235 1.00774 0.99882 0.98532 1.20885 0.97230 0.93939 0.97625 1.20959 1.00530 0.94935 0.97405 0.92521 0.92410 0.92550 0.91213 0.91256 0.86359 0.86229 0.91366 0.91831 0.91531 0.76883 0.92111 0.92037 0.87358 0.96801 0.93695 0.92966 0.92760 0.94375 0.86326 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.09 -0.87 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 5 C -0.11 -1.17 9.67 -39.59 -0.38 -1.56 16 6 C -0.07 -0.80 4.40 -104.63 -0.46 -1.26 16 7 C -0.07 -0.78 2.90 -92.92 -0.27 -1.05 16 8 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 9 C -0.14 -1.20 8.90 37.16 0.33 -0.87 16 10 C 0.52 7.51 7.02 -10.98 -0.08 7.43 16 11 O -0.53 -9.90 14.73 5.56 0.08 -9.81 16 12 N -0.71 -10.28 5.07 -52.03 -0.26 -10.54 16 13 C 0.14 2.46 2.85 -66.10 -0.19 2.27 16 14 H 0.09 1.83 7.25 -51.93 -0.38 1.46 16 15 C -0.15 -3.05 6.77 -24.58 -0.17 -3.22 16 16 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 17 N -0.60 -14.78 3.13 -162.57 -0.51 -15.28 16 18 C -0.22 -5.95 9.89 -15.06 -0.15 -6.10 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 22 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.16 3.09 3.48 -66.95 -0.23 2.85 16 27 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 28 C -0.15 -2.87 9.13 37.16 0.34 -2.53 16 29 C -0.08 -0.97 7.92 -39.58 -0.31 -1.28 16 30 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.58 7.40 -51.93 -0.38 0.20 16 40 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 41 H 0.40 4.71 7.79 -40.82 -0.32 4.39 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.12 1.47 7.52 -52.48 -0.39 1.08 16 51 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -31.74 405.38 -10.68 -42.43 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.85 Total: 4.69 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.79 Total: -8.32 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.21 Total: -51.91 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.74 -10.68 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088924160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.017 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds