Wall clock time and date at job start Tue Mar 31 2020 16:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47437 * 2 1 4 4 C 1.38238 * 120.00043 * 89.99624 * 3 2 1 5 5 C 1.38230 * 120.00096 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00163 * 359.95737 * 5 4 3 7 7 C 1.50701 * 120.00216 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47419 * 120.00264 * 7 6 5 10 10 C 1.50703 * 109.47064 * 240.00219 * 7 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 7 14 14 H 1.09001 * 110.63644 * 328.13721 * 13 12 10 15 15 C 1.55154 * 110.71945 * 91.47492 * 13 12 10 16 16 C 1.54914 * 101.57982 * 153.86820 * 15 13 12 17 17 N 1.47422 * 104.83031 * 322.98822 * 16 15 13 18 18 C 1.36939 * 125.64797 * 204.09791 * 17 16 15 19 19 H 1.07998 * 119.99962 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99908 * 0.03654 * 18 17 16 21 21 N 1.31620 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47061 * 90.00160 * 22 20 18 24 24 H 1.48500 * 109.47078 * 210.00167 * 22 20 18 25 25 H 1.48505 * 109.47022 * 330.00109 * 22 20 18 26 26 C 1.47019 * 108.70491 * 24.12944 * 17 16 15 27 27 H 1.09000 * 109.88489 * 239.52216 * 26 17 16 28 28 C 1.53002 * 109.88342 * 118.35853 * 26 17 16 29 29 C 1.38236 * 119.99764 * 0.27659 * 6 5 4 30 30 C 1.38230 * 120.00201 * 269.98568 * 3 2 1 31 31 H 1.09001 * 109.46755 * 299.99857 * 1 2 3 32 32 H 1.08996 * 109.47183 * 59.99526 * 1 2 3 33 33 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47229 * 240.00268 * 2 1 3 35 35 H 1.09002 * 109.47115 * 120.00057 * 2 1 3 36 36 H 1.08003 * 119.99697 * 359.97438 * 4 3 2 37 37 H 1.08002 * 119.99752 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 39 39 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 40 40 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 41 41 H 0.97005 * 119.99463 * 359.97438 * 12 10 7 42 42 H 1.09003 * 111.00106 * 271.93541 * 15 13 12 43 43 H 1.08994 * 111.00903 * 35.79216 * 15 13 12 44 44 H 1.09004 * 110.36694 * 204.14994 * 16 15 13 45 45 H 1.08998 * 110.46018 * 81.87316 * 16 15 13 46 46 H 0.96995 * 119.99776 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.46881 * 302.19653 * 28 26 17 48 48 H 1.09001 * 109.47147 * 62.19231 * 28 26 17 49 49 H 1.08997 * 109.46964 * 182.19430 * 28 26 17 50 50 H 1.08004 * 120.00235 * 179.72447 * 29 6 5 51 51 H 1.08003 * 119.99913 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3759 1.1972 6 6 2.9539 4.0274 0.0001 7 6 3.4563 5.4482 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8044 5.5125 -0.7207 10 6 2.4639 6.3319 -0.7107 11 8 1.4489 5.8549 -1.1723 12 7 2.7049 7.6522 -0.8344 13 6 1.7399 8.5114 -1.5249 14 1 1.2322 7.9601 -2.3163 15 6 0.7170 9.1053 -0.5208 16 6 0.2924 10.4081 -1.2436 17 7 1.5239 10.9015 -1.8864 18 6 1.7769 12.2017 -2.2341 19 1 2.7140 12.4626 -2.7031 20 6 0.8288 13.1842 -1.9834 21 7 -0.3130 12.8662 -1.4111 22 14 1.1736 14.9577 -2.4583 23 1 0.6969 15.2008 -3.8435 24 1 0.4637 15.8674 -1.5236 25 1 2.6344 15.2146 -2.3853 26 6 2.4351 9.7665 -2.0931 27 1 3.3722 9.9424 -1.5649 28 6 2.7041 9.5806 -3.5878 29 6 2.7190 3.3773 -1.1970 30 6 2.2631 2.0723 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9027 3.8851 2.1325 38 1 5.5222 4.8733 -0.2066 39 1 4.6836 5.1698 -1.7484 40 1 5.1680 6.5401 -0.7203 41 1 3.5169 8.0336 -0.4655 42 1 -0.1339 8.4369 -0.3886 43 1 1.1910 9.3258 0.4355 44 1 -0.0783 11.1378 -0.5236 45 1 -0.4689 10.1965 -1.9944 46 1 -0.9752 13.5528 -1.2356 47 1 1.7601 9.4248 -4.1102 48 1 3.1949 10.4704 -3.9821 49 1 3.3487 8.7142 -3.7360 50 1 2.8951 3.8878 -2.1324 51 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088924160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:02 Heat of formation + Delta-G solvation = -21.189943 kcal Electronic energy + Delta-G solvation = -28306.591097 eV Core-core repulsion = 24590.933555 eV Total energy + Delta-G solvation = -3715.657542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43182 -40.18721 -39.08550 -35.99180 -35.59576 -34.04846 -33.18973 -32.04929 -31.77628 -30.46508 -29.32697 -26.74184 -25.90706 -25.54741 -23.93278 -23.62085 -22.19820 -21.67007 -21.52000 -20.63995 -18.72135 -18.00903 -17.64390 -17.10792 -16.63491 -16.44441 -15.97662 -15.77993 -15.68892 -15.30950 -14.91920 -14.69160 -14.52617 -14.36727 -14.13678 -14.02948 -13.97326 -13.83072 -13.57583 -13.23821 -13.20472 -12.93555 -12.78498 -12.69600 -12.61014 -12.51573 -12.30017 -12.23709 -12.10712 -11.99809 -11.95324 -11.64629 -11.60670 -11.57651 -11.43544 -10.75481 -10.69758 -9.97865 -9.73115 -9.37974 -8.90170 -7.74705 -5.19886 0.43854 0.58150 1.48148 1.49788 1.58225 1.68581 2.16933 2.52429 2.92283 3.35743 3.55918 3.61940 3.81313 3.86862 3.96283 3.96453 4.03303 4.16068 4.21229 4.23420 4.30883 4.43679 4.49448 4.53006 4.60573 4.62437 4.68516 4.71618 4.73835 4.79909 4.87391 4.92405 4.97307 5.04690 5.06919 5.08100 5.13550 5.19779 5.25298 5.29366 5.36715 5.38925 5.49942 5.56446 5.59440 5.65042 5.74823 5.77665 5.79842 6.17409 6.30374 6.62520 7.11062 7.31537 7.78997 8.42727 9.27222 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.002262 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.061725 B =12378.026283 C =12746.820672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.063 4.063 8 H 0.127 0.873 9 C -0.137 4.137 10 C 0.516 3.484 11 O -0.576 6.576 12 N -0.703 5.703 13 C 0.154 3.846 14 H 0.075 0.925 15 C -0.138 4.138 16 C 0.157 3.843 17 N -0.614 5.614 18 C -0.225 4.225 19 H 0.086 0.914 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.151 3.849 27 H 0.055 0.945 28 C -0.146 4.146 29 C -0.098 4.098 30 C -0.135 4.135 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.413 0.587 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.078 0.922 45 H -0.018 1.018 46 H 0.245 0.755 47 H 0.032 0.968 48 H 0.048 0.952 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -24.025 5.813 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.084 4.084 8 H 0.145 0.855 9 C -0.194 4.194 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.355 5.355 13 C 0.047 3.953 14 H 0.094 0.906 15 C -0.178 4.178 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.354 4.354 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.190 1.190 26 C 0.044 3.956 27 H 0.072 0.928 28 C -0.206 4.206 29 C -0.116 4.116 30 C -0.153 4.153 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.251 0.749 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.000 1.000 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.125 0.875 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.471 -24.155 5.485 26.893 hybrid contribution -0.326 1.550 -0.473 1.653 sum 10.145 -22.606 5.012 25.280 Atomic orbital electron populations 1.21745 0.94792 1.02327 1.01540 1.20571 0.96045 0.91517 1.03733 1.20180 0.98522 0.97346 0.92997 1.21238 1.00192 0.94965 0.98245 1.21275 0.99238 0.95351 0.97606 1.19475 1.00776 0.94444 0.93785 1.20332 0.94948 0.90713 1.02396 0.85482 1.21807 0.93334 1.04073 1.00187 1.21097 0.87093 0.82354 0.79125 1.90705 1.29885 1.74931 1.49979 1.45854 1.24394 1.07336 1.57917 1.21664 0.89631 0.89823 0.94135 0.90638 1.23183 0.98761 0.97155 0.98670 1.21661 0.87704 0.92727 0.94737 1.44735 1.15615 1.03005 1.70548 1.19399 1.01057 0.82976 1.31947 0.89593 1.25636 0.96406 1.02183 1.02121 1.70048 1.08407 1.32259 1.49480 0.85066 0.77814 0.79596 0.76787 1.21833 1.22302 1.19027 1.21207 0.93211 0.86257 0.94880 0.92780 1.22122 1.00393 1.01050 0.96992 1.20951 0.98409 0.94634 0.97627 1.21168 1.00802 0.94889 0.98419 0.93072 0.93767 0.90857 0.90408 0.89684 0.84234 0.84197 0.89631 0.92864 0.90047 0.74920 0.92053 0.90955 0.90453 1.00023 0.94487 0.94878 0.93309 0.91086 0.87512 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 5 C -0.12 -2.26 9.67 22.27 0.22 -2.04 16 6 C -0.08 -1.87 4.40 -19.87 -0.09 -1.96 16 7 C -0.06 -1.20 2.90 -12.28 -0.04 -1.24 16 8 H 0.13 1.82 7.88 -2.39 -0.02 1.80 16 9 C -0.14 -1.95 8.90 71.98 0.64 -1.30 16 10 C 0.52 14.24 7.02 87.66 0.62 14.86 16 11 O -0.58 -21.27 14.73 -3.02 -0.04 -21.31 16 12 N -0.70 -18.73 5.07 -436.93 -2.21 -20.94 16 13 C 0.15 5.45 2.85 46.18 0.13 5.58 16 14 H 0.08 3.00 7.25 -2.39 -0.02 2.98 16 15 C -0.14 -5.52 6.77 31.99 0.22 -5.30 16 16 C 0.16 7.96 5.89 86.86 0.51 8.47 16 17 N -0.61 -30.67 3.13 -668.25 -2.09 -32.76 16 18 C -0.22 -12.19 9.89 84.03 0.83 -11.36 16 19 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 21 N -0.95 -56.91 10.09 21.65 0.22 -56.69 16 22 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.15 5.84 3.48 45.34 0.16 5.99 16 27 H 0.05 1.92 7.72 -2.39 -0.02 1.91 16 28 C -0.15 -5.23 9.13 71.98 0.66 -4.57 16 29 C -0.10 -2.39 7.92 22.27 0.18 -2.21 16 30 C -0.13 -2.94 9.70 22.27 0.22 -2.73 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 35 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.14 2.03 7.95 -2.91 -0.02 2.01 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.88 7.40 -2.39 -0.02 0.86 16 40 H 0.08 0.92 7.56 -2.39 -0.02 0.90 16 41 H 0.41 8.43 7.79 -92.70 -0.72 7.70 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.08 4.42 5.87 -2.39 -0.01 4.41 16 45 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.11 2.73 7.52 -2.91 -0.02 2.71 16 51 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.90 405.38 3.79 -67.11 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.18 Total: 24.88 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.72 Total: -7.59 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.09 Total: -110.39 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.90 3.79 -67.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088924160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.921 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds