Wall clock time and date at job start Tue Mar 31 2020 16:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46727 * 2 1 4 4 C 1.38381 * 119.85605 * 265.00108 * 3 2 1 5 5 C 1.37933 * 120.14680 * 180.02562 * 4 3 2 6 6 C 1.39598 * 119.85004 * 359.97279 * 5 4 3 7 7 C 1.47847 * 120.13954 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99813 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99841 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.78147 * 328.23726 * 10 9 7 12 12 C 1.55158 * 110.72071 * 91.48090 * 10 9 7 13 13 C 1.54911 * 101.58033 * 153.86202 * 12 10 9 14 14 N 1.47425 * 104.83208 * 322.98442 * 13 12 10 15 15 C 1.36939 * 125.64872 * 204.15824 * 14 13 12 16 16 H 1.07995 * 119.99687 * 179.97438 * 15 14 13 17 17 C 1.38806 * 119.99687 * 359.97045 * 15 14 13 18 18 N 1.31618 * 120.00690 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46850 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46984 * 119.99545 * 19 17 15 22 22 H 1.48492 * 109.47122 * 240.00148 * 19 17 15 23 23 C 1.47022 * 108.70233 * 24.13300 * 14 13 12 24 24 H 1.08998 * 109.88124 * 239.36617 * 23 14 13 25 25 C 1.53006 * 109.88457 * 118.35301 * 23 14 13 26 26 C 1.39552 * 119.71310 * 0.25923 * 6 5 4 27 27 C 1.37982 * 119.85348 * 359.51056 * 26 6 5 28 28 C 1.50695 * 119.92745 * 180.22868 * 27 26 6 29 29 C 1.52998 * 109.47396 * 265.25454 * 28 27 26 30 30 H 1.08997 * 109.47526 * 59.99951 * 1 2 3 31 31 H 1.09009 * 109.46549 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46972 * 299.99486 * 1 2 3 33 33 H 1.08998 * 109.46972 * 240.00514 * 2 1 3 34 34 H 1.08997 * 109.47526 * 120.00049 * 2 1 3 35 35 H 1.08000 * 119.92427 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.07445 * 179.97438 * 5 4 3 37 37 H 0.96999 * 119.99570 * 359.97438 * 9 7 6 38 38 H 1.09002 * 111.00553 * 35.78620 * 12 10 9 39 39 H 1.09001 * 111.00138 * 271.93705 * 12 10 9 40 40 H 1.08998 * 110.36172 * 204.14938 * 13 12 10 41 41 H 1.08997 * 110.36670 * 81.82861 * 13 12 10 42 42 H 0.97000 * 120.00725 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47002 * 61.45069 * 25 23 14 44 44 H 1.08993 * 109.46955 * 181.45507 * 25 23 14 45 45 H 1.09000 * 109.47050 * 301.45335 * 25 23 14 46 46 H 1.08001 * 120.07433 * 179.74110 * 26 6 5 47 47 H 1.09000 * 109.47005 * 25.26022 * 28 27 26 48 48 H 1.09006 * 109.46903 * 145.25743 * 28 27 26 49 49 H 1.09006 * 109.46858 * 60.00261 * 29 28 27 50 50 H 1.08998 * 109.47322 * 179.97438 * 29 28 27 51 51 H 1.09000 * 109.47507 * 300.00261 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8212 3.3356 -1.2025 6 6 2.9556 4.0316 0.0001 7 6 3.4494 5.4251 0.0002 8 8 3.5659 6.0286 1.0489 9 7 3.7704 6.0265 -1.1625 10 6 4.2603 7.4071 -1.1623 11 1 3.8149 7.9753 -0.3457 12 6 5.8089 7.4402 -1.0734 13 6 6.1305 8.7950 -1.7521 14 7 5.1499 8.9109 -2.8469 15 6 5.3057 9.6611 -3.9818 16 1 4.5254 9.6795 -4.7282 17 6 6.4664 10.3980 -4.1727 18 7 7.4171 10.3760 -3.2628 19 14 6.6793 11.4209 -5.7213 20 1 5.4755 11.2768 -6.5790 21 1 6.8548 12.8483 -5.3513 22 1 7.8761 10.9512 -6.4642 23 6 3.9773 8.0870 -2.5185 24 1 3.8271 7.3319 -3.2901 25 6 2.7341 8.9719 -2.4076 26 6 2.6275 3.4042 1.2027 27 6 2.1632 2.1049 1.1953 28 6 1.8035 1.4276 2.4925 29 6 3.0004 0.6169 2.9936 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2564 1.4958 -2.1252 36 1 3.0774 3.8141 -2.1363 37 1 3.6778 5.5448 -1.9993 38 1 6.2499 6.6113 -1.6272 39 1 6.1409 7.4348 -0.0352 40 1 7.1450 8.7882 -2.1507 41 1 6.0061 9.6135 -1.0431 42 1 8.2281 10.8912 -3.3960 43 1 2.5481 9.4588 -3.3649 44 1 1.8743 8.3584 -2.1388 45 1 2.8944 9.7291 -1.6400 46 1 2.7332 3.9358 2.1369 47 1 1.5386 2.1809 3.2344 48 1 0.9555 0.7618 2.3318 49 1 3.8485 1.2827 3.1543 50 1 2.7404 0.1274 3.9322 51 1 3.2654 -0.1364 2.2517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089095703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:06 Heat of formation + Delta-G solvation = -5.722998 kcal Electronic energy + Delta-G solvation = -28214.624619 eV Core-core repulsion = 24499.637774 eV Total energy + Delta-G solvation = -3714.986845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.46329 -39.15995 -37.48811 -34.94996 -34.03280 -33.68744 -32.02651 -30.40058 -30.15337 -29.56269 -28.40531 -25.41613 -24.62559 -24.00000 -23.56632 -21.89437 -21.77194 -20.31500 -20.01715 -19.43917 -17.42684 -16.85614 -16.49388 -15.83934 -15.63421 -14.96567 -14.78297 -14.60290 -14.13322 -14.07325 -13.91560 -13.84251 -13.74150 -13.50391 -13.38692 -12.80280 -12.76430 -12.66044 -12.17038 -12.10374 -12.03538 -11.74068 -11.61307 -11.55123 -11.42119 -11.13919 -11.05217 -10.87511 -10.86818 -10.84033 -10.55383 -10.41627 -10.07363 -9.76621 -9.69427 -9.55113 -9.03606 -8.87044 -8.67530 -8.55161 -6.87826 -5.65937 -3.08883 0.72905 1.17609 2.87449 3.33197 3.39029 3.44710 3.46892 3.76272 4.37263 4.44144 4.47609 4.59330 4.67477 4.78306 4.95044 4.98405 5.01025 5.09536 5.16712 5.27351 5.30510 5.33947 5.42134 5.47111 5.53023 5.55501 5.60860 5.63669 5.68433 5.74556 5.82542 5.83699 5.87884 6.00267 6.12704 6.14861 6.22459 6.26312 6.32375 6.35965 6.38835 6.54403 6.61358 6.71572 6.72773 6.87590 7.12045 7.52121 7.62542 7.73876 7.85045 8.33904 8.41097 9.20119 9.81022 10.44977 11.37426 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.002291 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123700 B =12216.634420 C =12664.865132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.129 4.129 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.135 3.865 11 H 0.095 0.905 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.595 5.595 15 C -0.219 4.219 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.155 3.845 24 H 0.035 0.965 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.090 4.090 28 C -0.087 4.087 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.397 0.603 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.015 0.985 42 H 0.252 0.748 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.135 0.865 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 -22.377 7.864 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.106 4.106 6 C -0.133 4.133 7 C 0.342 3.658 8 O -0.419 6.419 9 N -0.360 5.360 10 C 0.030 3.970 11 H 0.113 0.887 12 C -0.193 4.193 13 C 0.028 3.972 14 N -0.320 5.320 15 C -0.347 4.347 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.047 3.953 24 H 0.053 0.947 25 C -0.215 4.215 26 C -0.075 4.075 27 C -0.090 4.090 28 C -0.125 4.125 29 C -0.206 4.206 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.076 -21.762 8.494 26.297 hybrid contribution 0.097 0.495 -1.304 1.398 sum -11.978 -21.267 7.189 25.445 Atomic orbital electron populations 1.21767 0.94542 1.01786 1.02443 1.20655 0.96356 0.92621 1.03185 1.19920 0.97408 0.96051 0.92607 1.20948 1.00576 0.94913 0.97683 1.21321 0.97502 0.94612 0.97182 1.20009 1.04334 0.94511 0.94397 1.18244 0.77535 0.85935 0.84062 1.90757 1.54129 1.65782 1.31279 1.45993 1.66139 1.15295 1.08552 1.22183 0.95304 0.80462 0.99041 0.88705 1.23408 0.93970 1.01440 1.00470 1.21954 0.97559 0.89531 0.88190 1.44500 1.14028 1.53423 1.20083 1.19066 1.01255 1.19579 0.94842 0.90404 1.24792 0.96810 1.00522 0.98530 1.69804 1.08138 1.44995 1.33965 0.86010 0.77530 0.79807 0.82207 1.20557 1.21776 1.21766 1.20998 0.89098 0.92887 0.92343 0.94722 1.22241 0.97274 1.00068 1.01900 1.21142 0.94983 0.93574 0.97825 1.19684 1.00487 0.93957 0.94892 1.20599 0.98764 0.99372 0.93728 1.21778 0.98025 1.00026 1.00772 0.92406 0.92308 0.92335 0.90921 0.90437 0.85535 0.85515 0.76790 0.91987 0.91980 0.87302 0.96721 0.93738 0.92683 0.94343 0.92914 0.84757 0.90851 0.90579 0.92310 0.92326 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.72 37.16 0.36 -0.49 16 2 C -0.09 -0.58 5.38 -27.88 -0.15 -0.73 16 3 C -0.06 -0.52 5.14 -104.53 -0.54 -1.06 16 4 C -0.12 -1.12 9.66 -39.64 -0.38 -1.50 16 5 C -0.09 -0.93 9.54 -39.19 -0.37 -1.30 16 6 C -0.13 -1.68 5.87 -104.97 -0.62 -2.30 16 7 C 0.56 8.92 7.77 -12.33 -0.10 8.82 16 8 O -0.54 -10.55 15.99 5.32 0.09 -10.47 16 9 N -0.71 -10.96 5.13 -52.97 -0.27 -11.24 16 10 C 0.13 2.51 2.84 -66.09 -0.19 2.32 16 11 H 0.09 1.91 7.26 -51.93 -0.38 1.53 16 12 C -0.15 -3.10 6.77 -24.58 -0.17 -3.26 16 13 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 14 N -0.60 -14.86 3.13 -162.57 -0.51 -15.37 16 15 C -0.22 -5.95 9.87 -15.06 -0.15 -6.10 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 19 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.15 3.14 3.48 -66.95 -0.23 2.90 16 24 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 25 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 26 C -0.06 -0.68 9.22 -39.19 -0.36 -1.04 16 27 C -0.09 -0.87 5.13 -104.68 -0.54 -1.41 16 28 C -0.09 -0.65 5.37 -27.89 -0.15 -0.80 16 29 C -0.15 -1.01 9.72 37.16 0.36 -0.65 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.35 6.79 -51.93 -0.35 0.00 16 33 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 34 H 0.08 0.45 5.59 -51.93 -0.29 0.16 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.14 6.41 -52.49 -0.34 0.80 16 37 H 0.40 5.14 6.41 -40.82 -0.26 4.88 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.11 2.98 5.87 -51.93 -0.31 2.68 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.05 1.06 8.03 -51.93 -0.42 0.65 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.13 1.68 7.65 -52.49 -0.40 1.27 16 47 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 48 H 0.08 0.47 5.60 -51.93 -0.29 0.18 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -31.52 398.90 -10.53 -42.05 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.39 Total: 4.12 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.99 Total: -5.86 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.22 Total: -52.72 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.52 -10.53 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089095703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.331 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds