Wall clock time and date at job start Tue Mar 31 2020 16:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46727 * 2 1 4 4 C 1.38381 * 119.85605 * 265.00108 * 3 2 1 5 5 C 1.37933 * 120.14680 * 180.02562 * 4 3 2 6 6 C 1.39598 * 119.85004 * 359.97279 * 5 4 3 7 7 C 1.47847 * 120.13954 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99813 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99841 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.78147 * 328.23726 * 10 9 7 12 12 C 1.55158 * 110.72071 * 91.48090 * 10 9 7 13 13 C 1.54911 * 101.58033 * 153.86202 * 12 10 9 14 14 N 1.47425 * 104.83208 * 322.98442 * 13 12 10 15 15 C 1.36939 * 125.64872 * 204.15824 * 14 13 12 16 16 H 1.07995 * 119.99687 * 179.97438 * 15 14 13 17 17 C 1.38806 * 119.99687 * 359.97045 * 15 14 13 18 18 N 1.31618 * 120.00690 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46850 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46984 * 119.99545 * 19 17 15 22 22 H 1.48492 * 109.47122 * 240.00148 * 19 17 15 23 23 C 1.47022 * 108.70233 * 24.13300 * 14 13 12 24 24 H 1.08998 * 109.88124 * 239.36617 * 23 14 13 25 25 C 1.53006 * 109.88457 * 118.35301 * 23 14 13 26 26 C 1.39552 * 119.71310 * 0.25923 * 6 5 4 27 27 C 1.37982 * 119.85348 * 359.51056 * 26 6 5 28 28 C 1.50695 * 119.92745 * 180.22868 * 27 26 6 29 29 C 1.52998 * 109.47396 * 265.25454 * 28 27 26 30 30 H 1.08997 * 109.47526 * 59.99951 * 1 2 3 31 31 H 1.09009 * 109.46549 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46972 * 299.99486 * 1 2 3 33 33 H 1.08998 * 109.46972 * 240.00514 * 2 1 3 34 34 H 1.08997 * 109.47526 * 120.00049 * 2 1 3 35 35 H 1.08000 * 119.92427 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.07445 * 179.97438 * 5 4 3 37 37 H 0.96999 * 119.99570 * 359.97438 * 9 7 6 38 38 H 1.09002 * 111.00553 * 35.78620 * 12 10 9 39 39 H 1.09001 * 111.00138 * 271.93705 * 12 10 9 40 40 H 1.08998 * 110.36172 * 204.14938 * 13 12 10 41 41 H 1.08997 * 110.36670 * 81.82861 * 13 12 10 42 42 H 0.97000 * 120.00725 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47002 * 61.45069 * 25 23 14 44 44 H 1.08993 * 109.46955 * 181.45507 * 25 23 14 45 45 H 1.09000 * 109.47050 * 301.45335 * 25 23 14 46 46 H 1.08001 * 120.07433 * 179.74110 * 26 6 5 47 47 H 1.09000 * 109.47005 * 25.26022 * 28 27 26 48 48 H 1.09006 * 109.46903 * 145.25743 * 28 27 26 49 49 H 1.09006 * 109.46858 * 60.00261 * 29 28 27 50 50 H 1.08998 * 109.47322 * 179.97438 * 29 28 27 51 51 H 1.09000 * 109.47507 * 300.00261 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8212 3.3356 -1.2025 6 6 2.9556 4.0316 0.0001 7 6 3.4494 5.4251 0.0002 8 8 3.5659 6.0286 1.0489 9 7 3.7704 6.0265 -1.1625 10 6 4.2603 7.4071 -1.1623 11 1 3.8149 7.9753 -0.3457 12 6 5.8089 7.4402 -1.0734 13 6 6.1305 8.7950 -1.7521 14 7 5.1499 8.9109 -2.8469 15 6 5.3057 9.6611 -3.9818 16 1 4.5254 9.6795 -4.7282 17 6 6.4664 10.3980 -4.1727 18 7 7.4171 10.3760 -3.2628 19 14 6.6793 11.4209 -5.7213 20 1 5.4755 11.2768 -6.5790 21 1 6.8548 12.8483 -5.3513 22 1 7.8761 10.9512 -6.4642 23 6 3.9773 8.0870 -2.5185 24 1 3.8271 7.3319 -3.2901 25 6 2.7341 8.9719 -2.4076 26 6 2.6275 3.4042 1.2027 27 6 2.1632 2.1049 1.1953 28 6 1.8035 1.4276 2.4925 29 6 3.0004 0.6169 2.9936 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2564 1.4958 -2.1252 36 1 3.0774 3.8141 -2.1363 37 1 3.6778 5.5448 -1.9993 38 1 6.2499 6.6113 -1.6272 39 1 6.1409 7.4348 -0.0352 40 1 7.1450 8.7882 -2.1507 41 1 6.0061 9.6135 -1.0431 42 1 8.2281 10.8912 -3.3960 43 1 2.5481 9.4588 -3.3649 44 1 1.8743 8.3584 -2.1388 45 1 2.8944 9.7291 -1.6400 46 1 2.7332 3.9358 2.1369 47 1 1.5386 2.1809 3.2344 48 1 0.9555 0.7618 2.3318 49 1 3.8485 1.2827 3.1543 50 1 2.7404 0.1274 3.9322 51 1 3.2654 -0.1364 2.2517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089095703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:05 Heat of formation + Delta-G solvation = -22.389837 kcal Electronic energy + Delta-G solvation = -28215.347347 eV Core-core repulsion = 24499.637774 eV Total energy + Delta-G solvation = -3715.709573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.50311 -40.31209 -39.07425 -35.85490 -35.48677 -34.32224 -33.81814 -32.09550 -30.99821 -30.68962 -29.79870 -26.77608 -25.90888 -25.46912 -24.45941 -22.83889 -22.48132 -22.01308 -21.53702 -20.67172 -18.72782 -18.52624 -17.69726 -16.96161 -16.54860 -16.44814 -16.00782 -15.89772 -15.72970 -15.29929 -14.79995 -14.77612 -14.58651 -14.45089 -14.34950 -14.13521 -14.02867 -13.73112 -13.46185 -13.27634 -13.19081 -12.95972 -12.78381 -12.75419 -12.64088 -12.49848 -12.26752 -12.13863 -12.11048 -12.01688 -11.95109 -11.68573 -11.59340 -11.47609 -11.44310 -10.98718 -10.74771 -10.13438 -9.81247 -9.56075 -8.91091 -7.75225 -5.20553 -0.15508 0.39719 1.48297 1.49184 1.59175 1.80993 2.04902 2.51751 2.83494 3.35400 3.50529 3.68932 3.74173 3.82794 3.87177 3.92833 3.96969 4.13764 4.17976 4.22552 4.42517 4.47304 4.48848 4.55014 4.55463 4.59874 4.60534 4.64909 4.77886 4.79060 4.86982 4.92702 5.01946 5.02674 5.07642 5.08654 5.11389 5.13077 5.23840 5.32267 5.34493 5.35912 5.47094 5.49709 5.51288 5.58500 5.58774 5.67700 5.78832 5.96876 6.29496 6.50601 7.10483 7.16131 7.77870 8.41720 9.27042 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.002291 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123700 B =12216.634420 C =12664.865132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.152 4.152 7 C 0.556 3.444 8 O -0.584 6.584 9 N -0.698 5.698 10 C 0.151 3.849 11 H 0.080 0.920 12 C -0.139 4.139 13 C 0.158 3.842 14 N -0.613 5.613 15 C -0.225 4.225 16 H 0.087 0.913 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.297 1.297 22 H -0.292 1.292 23 C 0.151 3.849 24 H 0.054 0.946 25 C -0.147 4.147 26 C -0.073 4.073 27 C -0.092 4.092 28 C -0.087 4.087 29 C -0.147 4.147 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.412 0.588 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.079 0.921 41 H -0.015 1.015 42 H 0.246 0.754 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.118 0.882 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.073 0.927 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -25.452 6.556 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.054 4.054 4 C -0.141 4.141 5 C -0.105 4.105 6 C -0.155 4.155 7 C 0.345 3.655 8 O -0.465 6.465 9 N -0.350 5.350 10 C 0.046 3.954 11 H 0.098 0.902 12 C -0.179 4.179 13 C 0.032 3.968 14 N -0.338 5.338 15 C -0.354 4.354 16 H 0.104 0.896 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.225 1.225 22 H -0.219 1.219 23 C 0.045 3.955 24 H 0.071 0.929 25 C -0.206 4.206 26 C -0.092 4.092 27 C -0.092 4.092 28 C -0.124 4.124 29 C -0.204 4.204 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.003 0.997 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.136 0.864 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.061 0.939 50 H 0.092 0.908 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.122 -24.880 7.162 29.491 hybrid contribution 0.655 1.345 -0.850 1.721 sum -13.467 -23.534 6.313 27.840 Atomic orbital electron populations 1.21764 0.93923 1.02696 1.02072 1.20738 0.96730 0.90855 1.04382 1.20309 0.95746 0.97220 0.92076 1.21306 0.99433 0.94336 0.98982 1.21509 0.97081 0.95233 0.96700 1.19808 1.06823 0.92999 0.95899 1.18754 0.76491 0.86977 0.83249 1.90732 1.55974 1.67059 1.32724 1.45759 1.65849 1.13947 1.09407 1.21754 0.93898 0.82071 0.97722 0.90219 1.23212 0.95452 0.99087 1.00121 1.21667 0.96322 0.90911 0.87853 1.44730 1.15725 1.53761 1.19610 1.19435 1.01195 1.19223 0.95505 0.89562 1.25629 0.96872 1.02225 1.01521 1.70047 1.08446 1.45927 1.35759 0.84990 0.77718 0.77557 0.78946 1.18820 1.22456 1.21939 1.21192 0.88043 0.92949 0.93365 0.92866 1.22128 0.97602 0.99768 1.01114 1.21159 0.96179 0.94765 0.97059 1.19911 0.99796 0.93067 0.96454 1.20655 0.99603 0.99531 0.92614 1.21766 0.97124 0.99768 1.01738 0.92781 0.90799 0.92756 0.89496 0.89566 0.82734 0.83934 0.75001 0.91069 0.91764 0.90300 0.99701 0.94444 0.93135 0.91294 0.94588 0.86390 0.91220 0.88839 0.93888 0.90833 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 71.98 0.70 -0.50 16 2 C -0.09 -0.81 5.38 29.85 0.16 -0.65 16 3 C -0.05 -0.79 5.14 -19.81 -0.10 -0.89 16 4 C -0.12 -1.84 9.66 22.23 0.21 -1.62 16 5 C -0.09 -1.63 9.54 22.53 0.21 -1.42 16 6 C -0.15 -3.86 5.87 -20.09 -0.12 -3.98 16 7 C 0.56 17.82 7.77 86.79 0.67 18.50 16 8 O -0.58 -23.43 15.99 -3.89 -0.06 -23.49 16 9 N -0.70 -20.87 5.13 -439.77 -2.25 -23.12 16 10 C 0.15 5.62 2.84 46.18 0.13 5.75 16 11 H 0.08 3.26 7.26 -2.39 -0.02 3.24 16 12 C -0.14 -5.71 6.77 31.99 0.22 -5.49 16 13 C 0.16 8.06 5.89 86.86 0.51 8.57 16 14 N -0.61 -30.93 3.13 -668.25 -2.09 -33.02 16 15 C -0.22 -12.24 9.87 84.03 0.83 -11.41 16 16 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 18 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 19 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 C 0.15 6.00 3.48 45.35 0.16 6.16 16 24 H 0.05 1.96 7.72 -2.39 -0.02 1.94 16 25 C -0.15 -5.38 9.14 71.98 0.66 -4.72 16 26 C -0.07 -1.75 9.22 22.53 0.21 -1.54 16 27 C -0.09 -1.65 5.13 -19.90 -0.10 -1.75 16 28 C -0.09 -1.15 5.37 29.85 0.16 -0.99 16 29 C -0.15 -1.75 9.72 71.98 0.70 -1.05 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.05 0.49 6.79 -2.39 -0.02 0.47 16 33 H 0.09 0.59 8.05 -2.39 -0.02 0.57 16 34 H 0.09 0.67 5.59 -2.39 -0.01 0.65 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.14 2.13 6.41 -2.91 -0.02 2.11 16 37 H 0.41 9.78 6.41 -92.71 -0.59 9.18 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.08 4.53 5.87 -2.39 -0.01 4.51 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 3.13 7.65 -2.91 -0.02 3.11 16 47 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 48 H 0.09 0.91 5.60 -2.38 -0.01 0.90 16 49 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.06 0.67 6.79 -2.39 -0.02 0.65 16 Total: -1.00 -70.47 398.90 3.85 -66.62 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.33 Total: 22.85 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.68 Total: -0.51 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.13 Total: -112.90 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.49 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.47 3.85 -66.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089095703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.235 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds