Wall clock time and date at job start Tue Mar 31 2020 16:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.26238 * 2 1 4 4 C 1.50883 * 109.36774 * 119.68267 * 2 1 3 5 5 C 1.52568 * 109.36000 * 212.07771 * 4 2 1 6 6 H 1.08997 * 108.51395 * 36.23969 * 5 4 2 7 7 N 1.46508 * 108.51060 * 153.73266 * 5 4 2 8 8 C 1.34770 * 119.99531 * 209.76469 * 7 5 4 9 9 O 1.21279 * 120.00497 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99886 * 180.02562 * 8 7 5 11 11 C 1.50293 * 109.46320 * 300.00919 * 10 8 7 12 12 C 1.32314 * 121.60889 * 303.32796 * 11 10 8 13 13 C 1.45203 * 123.00168 * 1.01548 * 12 11 10 14 14 C 1.32938 * 125.19868 * 319.52617 * 13 12 11 15 15 C 1.45200 * 125.19707 * 0.02562 * 14 13 12 16 16 C 1.32295 * 123.02522 * 40.43404 * 15 14 13 17 17 C 1.47095 * 114.32523 * 274.98405 * 5 4 2 18 18 C 1.54867 * 110.31833 * 62.80282 * 17 5 4 19 19 N 1.44583 * 109.60051 * 288.73039 * 18 17 5 20 20 C 1.36930 * 118.64411 * 270.72750 * 19 18 17 21 21 H 1.08010 * 119.99821 * 27.38393 * 20 19 18 22 22 C 1.38815 * 120.00125 * 207.38176 * 20 19 18 23 23 N 1.31617 * 119.99873 * 15.90802 * 22 20 19 24 24 Si 1.86801 * 120.00048 * 195.90088 * 22 20 19 25 25 H 1.48509 * 109.46738 * 84.98574 * 24 22 20 26 26 H 1.48494 * 109.47390 * 204.98609 * 24 22 20 27 27 H 1.48499 * 109.47428 * 324.98918 * 24 22 20 28 28 C 1.47599 * 122.70904 * 90.73092 * 19 18 17 29 29 H 1.08999 * 109.47067 * 300.31876 * 1 2 3 30 30 H 1.09000 * 109.47280 * 60.32149 * 1 2 3 31 31 H 1.09004 * 109.47161 * 180.31789 * 1 2 3 32 32 H 1.08999 * 109.46779 * 182.81799 * 3 2 1 33 33 H 1.08996 * 109.46778 * 302.81505 * 3 2 1 34 34 H 1.09002 * 109.47042 * 62.82078 * 3 2 1 35 35 H 1.09001 * 109.49271 * 92.10724 * 4 2 1 36 36 H 1.09003 * 109.48657 * 332.04326 * 4 2 1 37 37 H 0.96994 * 120.00094 * 29.76919 * 7 5 4 38 38 H 1.09004 * 109.46882 * 59.99739 * 10 8 7 39 39 H 1.08003 * 119.20215 * 123.32359 * 11 10 8 40 40 H 1.08001 * 118.51070 * 181.01902 * 12 11 10 41 41 H 1.08002 * 117.39858 * 139.54162 * 13 12 11 42 42 H 1.08007 * 117.39987 * 180.02562 * 14 13 12 43 43 H 1.08007 * 118.48716 * 220.45361 * 15 14 13 44 44 H 1.07997 * 119.20004 * 179.00216 * 16 15 14 45 45 H 1.08993 * 109.32840 * 302.54408 * 17 5 4 46 46 H 1.08996 * 109.18565 * 182.97223 * 17 5 4 47 47 H 1.08996 * 109.44807 * 48.77247 * 18 17 5 48 48 H 1.09001 * 109.44395 * 168.69201 * 18 17 5 49 49 H 0.96991 * 119.99935 * 180.02562 * 23 22 20 50 50 H 1.09008 * 108.94352 * 197.18033 * 28 19 18 51 51 H 1.08999 * 108.88031 * 78.51143 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0347 1.4444 0.0000 4 6 2.0303 -0.7049 1.2367 5 6 3.3487 -0.0768 1.6783 6 1 3.3017 0.9956 1.4890 7 7 3.5022 -0.2834 3.1206 8 6 4.1880 0.6106 3.8601 9 8 4.6783 1.5859 3.3317 10 6 4.3464 0.3978 5.3436 11 6 2.9907 0.3545 5.9909 12 6 2.1311 1.3527 5.8676 13 6 2.4120 2.5468 5.0907 14 6 3.5791 3.1823 5.0572 15 6 4.7681 2.7881 5.7915 16 6 5.1459 1.5277 5.9290 17 6 4.5357 -0.6193 0.9998 18 6 4.4645 -0.3320 -0.5203 19 7 3.4427 -1.1587 -1.1228 20 6 3.7901 -2.4005 -1.5834 21 1 4.6202 -2.9289 -1.1380 22 6 3.0756 -2.9802 -2.6228 23 7 2.2841 -2.2405 -3.3702 24 14 3.2375 -4.8103 -2.9607 25 1 2.2995 -5.5599 -2.0867 26 1 2.9119 -5.0816 -4.3839 27 1 4.6296 -5.2443 -2.6800 28 6 2.0405 -0.7192 -1.2618 29 1 -0.3633 0.5188 0.8871 30 1 -0.3634 0.5088 -0.8928 31 1 -0.3634 -1.0277 0.0057 32 1 3.1235 1.4487 -0.0505 33 1 1.6288 1.9710 -0.8637 34 1 1.7114 1.9422 0.9142 35 1 2.1866 -1.7607 1.0154 36 1 1.2946 -0.6053 2.0348 37 1 3.1104 -1.0636 3.5432 38 1 4.8646 -0.5444 5.5222 39 1 2.7112 -0.5127 6.5708 40 1 1.1770 1.2762 6.3678 41 1 1.6086 2.9510 4.4926 42 1 3.6485 4.0618 4.4341 43 1 5.3717 3.5594 6.2468 44 1 6.0508 1.3054 6.4749 45 1 4.5830 -1.6961 1.1617 46 1 5.4295 -0.1526 1.4137 47 1 4.2223 0.7186 -0.6801 48 1 5.4284 -0.5556 -0.9774 49 1 1.7846 -2.6456 -4.0962 50 1 1.4135 -1.5907 -1.4506 51 1 1.9664 -0.0398 -2.1109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089399372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:04 Heat of formation + Delta-G solvation = 50.316413 kcal Electronic energy + Delta-G solvation = -30390.767934 eV Core-core repulsion = 26678.211140 eV Total energy + Delta-G solvation = -3712.556794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.55040 -39.08266 -37.01926 -34.72097 -34.18551 -32.74604 -32.34456 -31.69589 -29.89373 -27.49892 -26.83562 -26.36328 -25.42545 -24.01848 -23.63824 -22.20547 -20.77594 -19.58991 -18.86882 -17.75444 -17.59682 -17.23996 -16.58153 -16.38310 -15.83118 -15.17973 -14.70385 -14.37565 -14.13975 -14.07099 -13.96654 -13.54146 -13.16759 -12.91772 -12.65786 -12.57641 -12.53607 -12.35138 -12.15827 -11.98017 -11.72812 -11.46330 -11.38753 -11.09820 -10.98410 -10.78028 -10.69223 -10.36580 -10.30745 -10.25727 -10.18137 -9.96302 -9.77633 -9.57888 -9.42766 -9.27517 -9.20738 -8.66792 -8.35475 -8.19751 -6.60485 -5.74780 -3.18752 1.18989 1.93787 2.86144 3.18950 3.38100 3.45525 3.46142 3.57148 4.52134 4.64811 4.73211 4.85313 5.01611 5.03641 5.15605 5.26520 5.32318 5.36825 5.43413 5.54555 5.56502 5.66103 5.76532 5.82836 5.88335 5.95918 5.97388 6.12388 6.28028 6.30331 6.32714 6.35622 6.36976 6.42404 6.43742 6.46611 6.67085 6.70512 6.71664 6.72016 6.80013 6.81239 6.85512 6.92304 7.01060 7.06828 7.22139 7.47603 7.75714 7.85946 7.86239 8.51192 8.56064 9.28164 9.95035 10.40996 11.32164 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003496 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.854661 B = 8006.649077 C = 8456.550417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.100 4.100 5 C 0.144 3.856 6 H 0.094 0.906 7 N -0.724 5.724 8 C 0.521 3.479 9 O -0.533 6.533 10 C -0.051 4.051 11 C -0.148 4.148 12 C -0.106 4.106 13 C -0.148 4.148 14 C -0.072 4.072 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.153 4.153 18 C 0.154 3.846 19 N -0.588 5.588 20 C -0.257 4.257 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.898 3.102 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.193 3.807 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.392 0.608 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.046 0.954 49 H 0.253 0.747 50 H 0.073 0.927 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 6.991 18.902 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.209 4.209 4 C -0.138 4.138 5 C 0.042 3.958 6 H 0.112 0.888 7 N -0.373 5.373 8 C 0.306 3.694 9 O -0.410 6.410 10 C -0.072 4.072 11 C -0.166 4.166 12 C -0.123 4.123 13 C -0.166 4.166 14 C -0.090 4.090 15 C -0.122 4.122 16 C -0.144 4.144 17 C -0.194 4.194 18 C 0.025 3.975 19 N -0.309 5.309 20 C -0.387 4.387 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.728 3.272 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.068 3.932 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.675 7.678 18.318 19.874 hybrid contribution -0.200 -1.494 0.055 1.508 sum -0.876 6.184 18.374 19.406 Atomic orbital electron populations 1.21788 0.95277 1.01211 1.00523 1.20915 0.94741 0.95414 0.97970 1.22366 1.02416 0.96167 0.99976 1.21273 0.94419 1.01562 0.96511 1.20306 0.95412 1.02627 0.77471 0.88804 1.46419 1.55257 1.25933 1.09704 1.20244 0.78194 0.82863 0.88053 1.90673 1.47949 1.29136 1.73239 1.19258 0.95253 0.99984 0.92730 1.22905 0.92399 0.99291 1.01982 1.21111 0.99214 0.93802 0.98222 1.20982 0.98090 0.96953 1.00579 1.21018 0.92005 0.99704 0.96233 1.20990 0.96751 0.96333 0.98143 1.22681 0.98312 0.92478 1.00943 1.21857 0.96449 1.01070 1.00022 1.20802 0.92895 0.94127 0.89665 1.43624 1.03052 1.15556 1.68639 1.19188 1.15316 0.92636 1.11584 0.91880 1.25020 1.00493 0.98065 0.95656 1.70061 1.31747 1.33619 1.19232 0.86377 0.77850 0.85939 0.77004 1.21519 1.21829 1.20578 1.21053 0.84730 0.97512 0.89942 0.93881 0.92927 0.92927 0.90736 0.93422 0.94075 0.90521 0.93128 0.77525 0.87885 0.86188 0.86588 0.87182 0.87043 0.86715 0.86488 0.92259 0.93120 0.93799 0.93568 0.93732 0.90896 0.95646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.14 37.16 0.30 -1.79 16 2 C -0.09 -1.60 0.75 -155.08 -0.12 -1.71 16 3 C -0.15 -2.62 6.77 37.16 0.25 -2.37 16 4 C -0.10 -1.69 4.39 -28.01 -0.12 -1.81 16 5 C 0.14 2.40 1.79 -70.98 -0.13 2.27 16 6 H 0.09 1.70 3.94 -51.93 -0.20 1.50 16 7 N -0.72 -10.14 4.78 -56.81 -0.27 -10.41 16 8 C 0.52 7.46 5.32 -10.99 -0.06 7.40 16 9 O -0.53 -9.37 13.16 5.56 0.07 -9.30 16 10 C -0.05 -0.55 2.89 -94.48 -0.27 -0.83 16 11 C -0.15 -1.40 8.89 -36.43 -0.32 -1.72 16 12 C -0.11 -1.07 9.58 -38.74 -0.37 -1.44 16 13 C -0.15 -1.73 8.53 -38.65 -0.33 -2.06 16 14 C -0.07 -0.87 7.35 -38.65 -0.28 -1.16 16 15 C -0.10 -1.18 9.09 -38.75 -0.35 -1.53 16 16 C -0.13 -1.37 8.77 -36.44 -0.32 -1.69 16 17 C -0.15 -2.83 5.20 -28.58 -0.15 -2.98 16 18 C 0.15 3.25 5.58 -4.08 -0.02 3.23 16 19 N -0.59 -14.13 2.27 -172.08 -0.39 -14.52 16 20 C -0.26 -6.86 9.43 -15.06 -0.14 -7.01 16 21 H 0.06 1.68 7.88 -52.48 -0.41 1.27 16 22 C 0.01 0.17 4.85 -17.43 -0.08 0.09 16 23 N -0.90 -25.67 11.09 55.49 0.62 -25.06 16 24 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.19 4.42 3.56 -2.95 -0.01 4.41 16 29 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.07 1.37 3.22 -51.93 -0.17 1.20 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.65 7.80 -51.93 -0.41 0.25 16 35 H 0.08 1.48 7.48 -51.93 -0.39 1.09 16 36 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 37 H 0.39 4.66 8.50 -40.82 -0.35 4.32 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.95 7.93 -51.93 -0.41 0.53 16 47 H 0.04 0.91 5.17 -51.93 -0.27 0.64 16 48 H 0.05 1.01 7.99 -51.93 -0.41 0.60 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.07 1.88 6.23 -51.92 -0.32 1.55 16 51 H 0.03 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -30.21 380.20 -10.16 -40.37 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.36 Total: 7.47 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.53 Total: -10.71 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.05 Total: -49.99 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.21 -10.16 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089399372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.683 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds