Wall clock time and date at job start Tue Mar 31 2020 16:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.26238 * 2 1 4 4 C 1.50883 * 109.36774 * 119.68267 * 2 1 3 5 5 C 1.52568 * 109.36000 * 212.07771 * 4 2 1 6 6 H 1.08997 * 108.51395 * 36.23969 * 5 4 2 7 7 N 1.46508 * 108.51060 * 153.73266 * 5 4 2 8 8 C 1.34770 * 119.99531 * 209.76469 * 7 5 4 9 9 O 1.21279 * 120.00497 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99886 * 180.02562 * 8 7 5 11 11 C 1.50293 * 109.46320 * 300.00919 * 10 8 7 12 12 C 1.32314 * 121.60889 * 303.32796 * 11 10 8 13 13 C 1.45203 * 123.00168 * 1.01548 * 12 11 10 14 14 C 1.32938 * 125.19868 * 319.52617 * 13 12 11 15 15 C 1.45200 * 125.19707 * 0.02562 * 14 13 12 16 16 C 1.32295 * 123.02522 * 40.43404 * 15 14 13 17 17 C 1.47095 * 114.32523 * 274.98405 * 5 4 2 18 18 C 1.54867 * 110.31833 * 62.80282 * 17 5 4 19 19 N 1.44583 * 109.60051 * 288.73039 * 18 17 5 20 20 C 1.36930 * 118.64411 * 270.72750 * 19 18 17 21 21 H 1.08010 * 119.99821 * 27.38393 * 20 19 18 22 22 C 1.38815 * 120.00125 * 207.38176 * 20 19 18 23 23 N 1.31617 * 119.99873 * 15.90802 * 22 20 19 24 24 Si 1.86801 * 120.00048 * 195.90088 * 22 20 19 25 25 H 1.48509 * 109.46738 * 84.98574 * 24 22 20 26 26 H 1.48494 * 109.47390 * 204.98609 * 24 22 20 27 27 H 1.48499 * 109.47428 * 324.98918 * 24 22 20 28 28 C 1.47599 * 122.70904 * 90.73092 * 19 18 17 29 29 H 1.08999 * 109.47067 * 300.31876 * 1 2 3 30 30 H 1.09000 * 109.47280 * 60.32149 * 1 2 3 31 31 H 1.09004 * 109.47161 * 180.31789 * 1 2 3 32 32 H 1.08999 * 109.46779 * 182.81799 * 3 2 1 33 33 H 1.08996 * 109.46778 * 302.81505 * 3 2 1 34 34 H 1.09002 * 109.47042 * 62.82078 * 3 2 1 35 35 H 1.09001 * 109.49271 * 92.10724 * 4 2 1 36 36 H 1.09003 * 109.48657 * 332.04326 * 4 2 1 37 37 H 0.96994 * 120.00094 * 29.76919 * 7 5 4 38 38 H 1.09004 * 109.46882 * 59.99739 * 10 8 7 39 39 H 1.08003 * 119.20215 * 123.32359 * 11 10 8 40 40 H 1.08001 * 118.51070 * 181.01902 * 12 11 10 41 41 H 1.08002 * 117.39858 * 139.54162 * 13 12 11 42 42 H 1.08007 * 117.39987 * 180.02562 * 14 13 12 43 43 H 1.08007 * 118.48716 * 220.45361 * 15 14 13 44 44 H 1.07997 * 119.20004 * 179.00216 * 16 15 14 45 45 H 1.08993 * 109.32840 * 302.54408 * 17 5 4 46 46 H 1.08996 * 109.18565 * 182.97223 * 17 5 4 47 47 H 1.08996 * 109.44807 * 48.77247 * 18 17 5 48 48 H 1.09001 * 109.44395 * 168.69201 * 18 17 5 49 49 H 0.96991 * 119.99935 * 180.02562 * 23 22 20 50 50 H 1.09008 * 108.94352 * 197.18033 * 28 19 18 51 51 H 1.08999 * 108.88031 * 78.51143 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0347 1.4444 0.0000 4 6 2.0303 -0.7049 1.2367 5 6 3.3487 -0.0768 1.6783 6 1 3.3017 0.9956 1.4890 7 7 3.5022 -0.2834 3.1206 8 6 4.1880 0.6106 3.8601 9 8 4.6783 1.5859 3.3317 10 6 4.3464 0.3978 5.3436 11 6 2.9907 0.3545 5.9909 12 6 2.1311 1.3527 5.8676 13 6 2.4120 2.5468 5.0907 14 6 3.5791 3.1823 5.0572 15 6 4.7681 2.7881 5.7915 16 6 5.1459 1.5277 5.9290 17 6 4.5357 -0.6193 0.9998 18 6 4.4645 -0.3320 -0.5203 19 7 3.4427 -1.1587 -1.1228 20 6 3.7901 -2.4005 -1.5834 21 1 4.6202 -2.9289 -1.1380 22 6 3.0756 -2.9802 -2.6228 23 7 2.2841 -2.2405 -3.3702 24 14 3.2375 -4.8103 -2.9607 25 1 2.2995 -5.5599 -2.0867 26 1 2.9119 -5.0816 -4.3839 27 1 4.6296 -5.2443 -2.6800 28 6 2.0405 -0.7192 -1.2618 29 1 -0.3633 0.5188 0.8871 30 1 -0.3634 0.5088 -0.8928 31 1 -0.3634 -1.0277 0.0057 32 1 3.1235 1.4487 -0.0505 33 1 1.6288 1.9710 -0.8637 34 1 1.7114 1.9422 0.9142 35 1 2.1866 -1.7607 1.0154 36 1 1.2946 -0.6053 2.0348 37 1 3.1104 -1.0636 3.5432 38 1 4.8646 -0.5444 5.5222 39 1 2.7112 -0.5127 6.5708 40 1 1.1770 1.2762 6.3678 41 1 1.6086 2.9510 4.4926 42 1 3.6485 4.0618 4.4341 43 1 5.3717 3.5594 6.2468 44 1 6.0508 1.3054 6.4749 45 1 4.5830 -1.6961 1.1617 46 1 5.4295 -0.1526 1.4137 47 1 4.2223 0.7186 -0.6801 48 1 5.4284 -0.5556 -0.9774 49 1 1.7846 -2.6456 -4.0962 50 1 1.4135 -1.5907 -1.4506 51 1 1.9664 -0.0398 -2.1109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089399372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:03 Heat of formation + Delta-G solvation = 34.435601 kcal Electronic energy + Delta-G solvation = -30391.456577 eV Core-core repulsion = 26678.211140 eV Total energy + Delta-G solvation = -3713.245437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71295 -40.42528 -38.08333 -36.29181 -35.73906 -33.96405 -33.17036 -33.14377 -31.47426 -28.97206 -28.22746 -27.36558 -27.26062 -25.71815 -24.43921 -23.68836 -22.07609 -21.16902 -19.98368 -19.11006 -18.54074 -18.43449 -18.03215 -17.46671 -17.17958 -16.85558 -16.00106 -15.82349 -15.39023 -15.32216 -15.16005 -15.06766 -14.57169 -14.26408 -14.18777 -14.07235 -13.78309 -13.37698 -13.33461 -13.07312 -12.99431 -12.95979 -12.85363 -12.81505 -12.62836 -12.27337 -12.13078 -11.99706 -11.81072 -11.74513 -11.59730 -11.48580 -11.10832 -11.07840 -10.77761 -10.69970 -10.43131 -10.13206 -9.87767 -9.06655 -8.60704 -7.82039 -5.28995 0.39077 1.14573 1.47306 1.48265 1.56393 1.82569 2.31046 2.47849 2.53431 3.30309 3.68815 3.78054 3.85169 3.94169 4.04935 4.07515 4.13923 4.19209 4.24294 4.26138 4.37629 4.45335 4.49454 4.59349 4.74335 4.75968 4.81402 4.83601 4.84531 4.87487 5.00826 5.04056 5.05066 5.09868 5.15060 5.22038 5.28088 5.30696 5.42167 5.52729 5.57734 5.58915 5.68447 5.71270 5.71657 5.76057 5.88256 5.88833 5.91266 5.98193 6.44080 6.77548 7.22349 7.47398 7.98272 8.38075 9.22291 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003496 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.854661 B = 8006.649077 C = 8456.550417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.089 4.089 5 C 0.153 3.847 6 H 0.084 0.916 7 N -0.716 5.716 8 C 0.518 3.482 9 O -0.569 6.569 10 C -0.051 4.051 11 C -0.139 4.139 12 C -0.120 4.120 13 C -0.153 4.153 14 C -0.091 4.091 15 C -0.120 4.120 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.150 3.850 19 N -0.598 5.598 20 C -0.264 4.264 21 H 0.061 0.939 22 C -0.043 4.043 23 N -0.932 5.932 24 Si 0.960 3.040 25 H -0.283 1.283 26 H -0.297 1.297 27 H -0.273 1.273 28 C 0.208 3.792 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.139 0.861 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.032 0.968 49 H 0.248 0.752 50 H 0.041 0.959 51 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 6.185 21.848 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.200 4.200 4 C -0.127 4.127 5 C 0.049 3.951 6 H 0.102 0.898 7 N -0.367 5.367 8 C 0.305 3.695 9 O -0.448 6.448 10 C -0.072 4.072 11 C -0.156 4.156 12 C -0.137 4.137 13 C -0.171 4.171 14 C -0.109 4.109 15 C -0.138 4.138 16 C -0.150 4.150 17 C -0.174 4.174 18 C 0.022 3.978 19 N -0.320 5.320 20 C -0.394 4.394 21 H 0.079 0.921 22 C -0.239 4.239 23 N -0.578 5.578 24 Si 0.789 3.211 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.198 1.198 28 C 0.083 3.917 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.241 0.759 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.146 0.854 44 H 0.157 0.843 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -1.057 6.866 21.311 22.415 hybrid contribution -0.015 -1.173 -0.898 1.477 sum -1.072 5.694 20.413 21.219 Atomic orbital electron populations 1.21751 0.93343 1.01431 1.01818 1.20798 0.96259 0.95429 0.95971 1.22250 1.01370 0.95521 1.00903 1.21144 0.95192 0.99726 0.96607 1.19956 0.94319 1.01628 0.79147 0.89787 1.46231 1.55456 1.26613 1.08377 1.20906 0.77072 0.81973 0.89498 1.90667 1.49259 1.30569 1.74277 1.19367 0.96705 1.01226 0.89910 1.23135 0.91095 1.00048 1.01367 1.21312 1.00552 0.93315 0.98565 1.21165 0.97726 0.97654 1.00605 1.21115 0.92958 0.99903 0.96919 1.21197 0.96806 0.97273 0.98480 1.22985 0.98962 0.92241 1.00808 1.21595 0.97604 1.00378 0.97815 1.20899 0.91502 0.94027 0.91323 1.43790 1.04084 1.15299 1.68821 1.19442 1.15031 0.93660 1.11288 0.92140 1.25701 1.00694 1.01746 0.95733 1.70223 1.32820 1.35009 1.19785 0.85398 0.78035 0.81370 0.76318 1.20951 1.22401 1.19811 1.20786 0.83882 0.95637 0.91408 0.90913 0.93278 0.93298 0.92165 0.93549 0.92094 0.92846 0.90289 0.75903 0.85330 0.83022 0.84574 0.87523 0.88118 0.85401 0.84298 0.93235 0.93138 0.93323 0.95003 0.94280 0.94075 0.99299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.14 71.98 0.59 -3.26 16 2 C -0.08 -2.94 0.75 -52.55 -0.04 -2.98 16 3 C -0.14 -4.82 6.77 71.98 0.49 -4.33 16 4 C -0.09 -2.86 4.39 29.76 0.13 -2.73 16 5 C 0.15 4.88 1.79 43.01 0.08 4.96 16 6 H 0.08 2.94 3.94 -2.39 -0.01 2.93 16 7 N -0.72 -18.26 4.78 -452.04 -2.16 -20.43 16 8 C 0.52 13.65 5.32 87.66 0.47 14.11 16 9 O -0.57 -19.33 13.16 -3.03 -0.04 -19.37 16 10 C -0.05 -0.94 2.89 -13.29 -0.04 -0.98 16 11 C -0.14 -2.07 8.89 24.48 0.22 -1.85 16 12 C -0.12 -2.06 9.58 22.99 0.22 -1.84 16 13 C -0.15 -3.36 8.53 22.89 0.20 -3.16 16 14 C -0.09 -2.16 7.35 22.89 0.17 -1.99 16 15 C -0.12 -2.54 9.09 22.99 0.21 -2.33 16 16 C -0.13 -2.52 8.77 24.49 0.21 -2.30 16 17 C -0.13 -4.88 5.20 29.40 0.15 -4.73 16 18 C 0.15 6.48 5.58 87.37 0.49 6.97 16 19 N -0.60 -29.53 2.27 -698.35 -1.58 -31.11 16 20 C -0.26 -14.36 9.43 84.04 0.79 -13.56 16 21 H 0.06 3.27 7.88 -2.91 -0.02 3.24 16 22 C -0.04 -2.38 4.85 84.86 0.41 -1.97 16 23 N -0.93 -54.77 11.09 21.65 0.24 -54.53 16 24 Si 0.96 44.71 29.58 68.60 2.03 46.74 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 C 0.21 9.83 3.56 86.49 0.31 10.13 16 29 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.52 8.13 -2.38 -0.02 1.51 16 32 H 0.06 2.20 3.22 -2.39 -0.01 2.19 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.81 7.80 -2.39 -0.02 1.79 16 35 H 0.05 2.01 7.48 -2.39 -0.02 1.99 16 36 H 0.08 2.12 7.64 -2.39 -0.02 2.11 16 37 H 0.41 8.26 8.50 -92.71 -0.79 7.47 16 38 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.10 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 44 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 47 H 0.05 2.06 5.17 -2.39 -0.01 2.05 16 48 H 0.03 1.43 7.99 -2.39 -0.02 1.42 16 49 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.04 2.19 6.23 -2.38 -0.01 2.17 16 51 H -0.01 -0.59 7.87 -2.39 -0.02 -0.61 16 Total: -1.00 -67.34 380.20 3.66 -63.68 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.13 Total: 26.84 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.05 Total: -11.83 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -3.50 Total: -106.07 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.04 Total: -19.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.34 3.66 -63.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089399372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.121 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds