Wall clock time and date at job start Tue Mar 31 2020 16:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.36077 * 2 1 4 4 C 1.54837 * 109.35910 * 119.72889 * 2 1 3 5 5 C 1.50128 * 110.78343 * 81.35896 * 4 2 1 6 6 H 1.08999 * 110.25080 * 338.69440 * 5 4 2 7 7 N 1.46502 * 110.25152 * 216.63971 * 5 4 2 8 8 C 1.34772 * 120.00431 * 154.99795 * 7 5 4 9 9 O 1.21278 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00324 * 179.97438 * 8 7 5 11 11 C 1.50278 * 109.46944 * 300.03342 * 10 8 7 12 12 C 1.32322 * 121.60379 * 303.32043 * 11 10 8 13 13 C 1.45210 * 123.00002 * 1.02184 * 12 11 10 14 14 C 1.32935 * 125.19986 * 319.51910 * 13 12 11 15 15 C 1.45205 * 125.19650 * 0.02650 * 14 13 12 16 16 C 1.32298 * 123.02524 * 40.42999 * 15 14 13 17 17 C 1.52484 * 105.43012 * 97.72992 * 5 4 2 18 18 C 1.46231 * 114.24167 * 270.54631 * 17 5 4 19 19 N 1.50169 * 107.53378 * 58.40097 * 18 17 5 20 20 C 1.36929 * 120.53458 * 109.61470 * 19 18 17 21 21 H 1.08001 * 120.00015 * 156.65193 * 20 19 18 22 22 C 1.38815 * 120.00186 * 336.64918 * 20 19 18 23 23 N 1.31621 * 119.99701 * 340.44905 * 22 20 19 24 24 Si 1.86796 * 120.00133 * 160.44401 * 22 20 19 25 25 H 1.48511 * 109.47193 * 90.00392 * 24 22 20 26 26 H 1.48501 * 109.47257 * 210.00121 * 24 22 20 27 27 H 1.48497 * 109.47396 * 330.00675 * 24 22 20 28 28 C 1.43433 * 118.92970 * 289.59210 * 19 18 17 29 29 H 1.08993 * 109.47402 * 300.27332 * 1 2 3 30 30 H 1.09005 * 109.46890 * 60.27377 * 1 2 3 31 31 H 1.09000 * 109.47406 * 180.26777 * 1 2 3 32 32 H 1.08991 * 109.47307 * 179.72206 * 3 2 1 33 33 H 1.08996 * 109.47195 * 299.73132 * 3 2 1 34 34 H 1.09002 * 109.46706 * 59.72422 * 3 2 1 35 35 H 1.09002 * 109.21087 * 201.68384 * 4 2 1 36 36 H 1.09001 * 109.20577 * 321.03934 * 4 2 1 37 37 H 0.97007 * 119.99675 * 334.99325 * 7 5 4 38 38 H 1.09010 * 109.46266 * 60.01688 * 10 8 7 39 39 H 1.08002 * 119.20641 * 123.31805 * 11 10 8 40 40 H 1.08000 * 118.51527 * 181.02509 * 12 11 10 41 41 H 1.07998 * 117.39970 * 139.55015 * 13 12 11 42 42 H 1.07997 * 117.40541 * 180.02562 * 14 13 12 43 43 H 1.07997 * 118.48959 * 220.45447 * 15 14 13 44 44 H 1.07991 * 119.20556 * 178.99801 * 16 15 14 45 45 H 1.09003 * 108.54244 * 149.30852 * 17 5 4 46 46 H 1.08999 * 108.41761 * 31.68289 * 17 5 4 47 47 H 1.09006 * 109.84138 * 298.89751 * 18 17 5 48 48 H 1.08995 * 109.85087 * 177.91424 * 18 17 5 49 49 H 0.97006 * 119.99347 * 179.97438 * 23 22 20 50 50 H 1.09007 * 108.16298 * 329.85406 * 28 19 18 51 51 H 1.08995 * 108.00571 * 213.15553 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4435 0.0000 4 6 2.0432 -0.7244 1.2686 5 6 2.0209 -2.2133 1.0776 6 1 1.3255 -2.4813 0.2821 7 7 1.6455 -2.8793 2.3273 8 6 1.0808 -4.1026 2.2958 9 8 0.8838 -4.6523 1.2329 10 6 0.6952 -4.7879 3.5814 11 6 1.9172 -4.9734 4.4362 12 6 2.9802 -5.6256 3.9941 13 6 3.0631 -6.1897 2.6586 14 6 2.0740 -6.8155 2.0283 15 6 0.7454 -7.0388 2.5699 16 6 0.0907 -6.1288 3.2725 17 6 3.4446 -2.5935 0.6857 18 6 3.7000 -2.5614 -0.7538 19 7 3.4056 -1.1696 -1.2346 20 6 4.4211 -0.3416 -1.6323 21 1 4.2179 0.4760 -2.3081 22 6 5.7117 -0.5530 -1.1670 23 7 5.9105 -1.2693 -0.0808 24 14 7.1663 0.1788 -2.0824 25 1 7.4602 1.5314 -1.5442 26 1 8.3542 -0.6941 -1.9029 27 1 6.8410 0.2811 -3.5277 28 6 2.0435 -0.7216 -1.2709 29 1 -0.3634 0.5180 0.8875 30 1 -0.3633 0.5096 -0.8925 31 1 -0.3634 -1.0276 0.0048 32 1 3.1271 1.4456 0.0050 33 1 1.6768 1.9552 -0.8923 34 1 1.6688 1.9580 0.8875 35 1 3.0645 -0.4047 1.4757 36 1 1.4070 -0.4617 2.1137 37 1 1.8035 -2.4398 3.1775 38 1 -0.0320 -4.1760 4.1153 39 1 1.9282 -4.5644 5.4357 40 1 3.8249 -5.7440 4.6566 41 1 4.0033 -6.0937 2.1360 42 1 2.2744 -7.1873 1.0344 43 1 0.2698 -7.9918 2.3913 44 1 -0.9020 -6.3547 3.6324 45 1 3.6476 -3.6002 1.0511 46 1 4.1323 -1.9036 1.1748 47 1 3.0491 -3.2736 -1.2610 48 1 4.7435 -2.8078 -0.9501 49 1 6.8125 -1.4173 0.2442 50 1 1.4059 -1.5872 -1.4511 51 1 1.9351 -0.0409 -2.1152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089399377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:07 Heat of formation + Delta-G solvation = 41.128067 kcal Electronic energy + Delta-G solvation = -30658.077293 eV Core-core repulsion = 26945.122063 eV Total energy + Delta-G solvation = -3712.955230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.29896 -38.66345 -36.81988 -34.49112 -34.33615 -32.53330 -32.19562 -31.20975 -30.33387 -27.55390 -26.64367 -26.22323 -25.46559 -23.52793 -23.30782 -21.90021 -20.62203 -19.80034 -18.71317 -17.69759 -17.44789 -17.10355 -16.62173 -16.17550 -15.48345 -15.03168 -14.56534 -14.20443 -14.13184 -13.87978 -13.58865 -13.57568 -13.23379 -13.05832 -12.49704 -12.43335 -12.32220 -12.05678 -11.85502 -11.80254 -11.61788 -11.39101 -11.18668 -10.89358 -10.79721 -10.78779 -10.66582 -10.53810 -10.15426 -10.12632 -9.95304 -9.89989 -9.66243 -9.48273 -9.42362 -9.17534 -9.12520 -8.54509 -8.24812 -8.02446 -6.65100 -5.75037 -3.12836 1.35066 2.08316 3.00935 3.34667 3.38861 3.47078 3.49995 3.73085 4.54074 4.78687 4.86532 4.98145 5.16824 5.20030 5.27809 5.30256 5.43790 5.50596 5.55557 5.58600 5.66908 5.71152 5.95067 5.99472 6.05683 6.08038 6.15569 6.18869 6.34213 6.36909 6.43365 6.50300 6.56101 6.59943 6.62150 6.75927 6.78994 6.82469 6.85468 6.90178 6.97098 6.97292 7.05280 7.10224 7.18185 7.28994 7.40515 7.64845 7.78706 7.99161 8.05728 8.47062 8.72036 9.23499 9.91715 10.45594 11.31775 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004294 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.189619 B = 6519.163567 C = 7655.104654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.101 4.101 5 C 0.148 3.852 6 H 0.083 0.917 7 N -0.717 5.717 8 C 0.521 3.479 9 O -0.531 6.531 10 C -0.048 4.048 11 C -0.152 4.152 12 C -0.100 4.100 13 C -0.142 4.142 14 C -0.076 4.076 15 C -0.100 4.100 16 C -0.130 4.130 17 C -0.129 4.129 18 C 0.170 3.830 19 N -0.585 5.585 20 C -0.241 4.241 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.167 3.833 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.392 0.608 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.028 0.972 46 H 0.100 0.900 47 H 0.006 0.994 48 H 0.089 0.911 49 H 0.251 0.749 50 H 0.028 0.972 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -6.203 10.139 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.139 4.139 5 C 0.045 3.955 6 H 0.101 0.899 7 N -0.366 5.366 8 C 0.305 3.695 9 O -0.408 6.408 10 C -0.070 4.070 11 C -0.171 4.171 12 C -0.118 4.118 13 C -0.160 4.160 14 C -0.094 4.094 15 C -0.118 4.118 16 C -0.149 4.149 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.305 5.305 20 C -0.371 4.371 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.725 3.275 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.038 3.962 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.224 0.776 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.047 0.953 46 H 0.118 0.882 47 H 0.024 0.976 48 H 0.107 0.893 49 H 0.061 0.939 50 H 0.046 0.954 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.999 -6.645 9.382 15.236 hybrid contribution 0.952 0.694 0.231 1.201 sum -9.046 -5.951 9.613 14.479 Atomic orbital electron populations 1.21837 0.96265 1.00727 1.00418 1.21932 0.93146 0.96137 0.98118 1.21738 1.02817 0.94867 0.99092 1.21783 1.02058 0.93526 0.96497 1.20433 0.98164 0.91876 0.85020 0.89894 1.46184 1.62220 1.18175 1.10020 1.20242 0.77428 0.81340 0.90443 1.90679 1.54323 1.64123 1.31630 1.19225 0.96909 0.95949 0.94892 1.22860 0.92516 1.01799 0.99882 1.21130 0.97862 0.97343 0.95447 1.21029 0.99995 1.00128 0.94877 1.20992 0.92283 0.97818 0.98342 1.20996 0.95018 0.98849 0.96974 1.22656 0.98798 0.94083 0.99327 1.21286 0.94429 1.00561 1.00619 1.20086 1.00494 0.83712 0.91127 1.44253 1.01012 1.09995 1.75256 1.19151 0.87346 1.10288 1.20285 0.91661 1.24849 0.98103 1.00351 0.96262 1.69974 1.20019 1.43797 1.20654 0.86412 0.82853 0.78284 0.79911 1.21710 1.21778 1.20737 1.20503 0.86942 0.95528 0.93276 0.93808 0.93365 0.93388 0.90956 0.93977 0.94897 0.90181 0.94220 0.77553 0.88133 0.86290 0.86583 0.86882 0.87025 0.86843 0.86637 0.95289 0.88218 0.97559 0.89281 0.93928 0.95379 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.20 37.16 0.30 -1.78 16 2 C -0.09 -1.61 0.76 -152.53 -0.12 -1.72 16 3 C -0.13 -2.29 8.28 37.16 0.31 -1.99 16 4 C -0.10 -1.82 4.15 -27.19 -0.11 -1.93 16 5 C 0.15 2.75 2.16 -69.62 -0.15 2.60 16 6 H 0.08 1.73 5.15 -51.93 -0.27 1.46 16 7 N -0.72 -11.16 4.84 -55.47 -0.27 -11.43 16 8 C 0.52 8.24 5.48 -10.99 -0.06 8.18 16 9 O -0.53 -10.31 13.32 5.56 0.07 -10.23 16 10 C -0.05 -0.58 2.89 -94.48 -0.27 -0.86 16 11 C -0.15 -1.69 8.89 -36.44 -0.32 -2.01 16 12 C -0.10 -1.23 9.58 -38.74 -0.37 -1.60 16 13 C -0.14 -2.03 8.53 -38.65 -0.33 -2.35 16 14 C -0.08 -1.09 7.35 -38.65 -0.28 -1.38 16 15 C -0.10 -1.28 9.09 -38.74 -0.35 -1.63 16 16 C -0.13 -1.56 8.78 -36.43 -0.32 -1.88 16 17 C -0.13 -2.79 4.74 -30.21 -0.14 -2.93 16 18 C 0.17 4.04 5.24 -5.21 -0.03 4.01 16 19 N -0.58 -14.00 2.60 -175.08 -0.46 -14.46 16 20 C -0.24 -6.28 8.94 -15.06 -0.13 -6.41 16 21 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 22 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -24.15 9.43 55.49 0.52 -23.63 16 24 Si 0.89 21.22 29.60 -169.99 -5.03 16.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.17 3.49 4.00 -4.66 -0.02 3.47 16 29 H 0.04 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.76 7.57 -51.93 -0.39 0.36 16 32 H 0.07 1.52 7.45 -51.93 -0.39 1.14 16 33 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.70 6.64 -51.93 -0.34 1.35 16 36 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.39 5.18 8.41 -40.82 -0.34 4.84 16 38 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.03 0.63 8.02 -51.93 -0.42 0.22 16 46 H 0.10 2.41 5.28 -51.93 -0.27 2.14 16 47 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 48 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 49 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 50 H 0.03 0.59 6.69 -51.93 -0.35 0.24 16 51 H 0.03 0.68 7.81 -51.93 -0.41 0.27 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -28.76 383.19 -10.39 -39.14 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.51 Total: 8.88 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.49 Total: -10.24 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.20 Total: -49.51 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.76 -10.39 -39.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089399377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.272 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds