Wall clock time and date at job start Tue Mar 31 2020 16:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.36077 * 2 1 4 4 C 1.54837 * 109.35910 * 119.72889 * 2 1 3 5 5 C 1.50128 * 110.78343 * 81.35896 * 4 2 1 6 6 H 1.08999 * 110.25080 * 338.69440 * 5 4 2 7 7 N 1.46502 * 110.25152 * 216.63971 * 5 4 2 8 8 C 1.34772 * 120.00431 * 154.99795 * 7 5 4 9 9 O 1.21278 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00324 * 179.97438 * 8 7 5 11 11 C 1.50278 * 109.46944 * 300.03342 * 10 8 7 12 12 C 1.32322 * 121.60379 * 303.32043 * 11 10 8 13 13 C 1.45210 * 123.00002 * 1.02184 * 12 11 10 14 14 C 1.32935 * 125.19986 * 319.51910 * 13 12 11 15 15 C 1.45205 * 125.19650 * 0.02650 * 14 13 12 16 16 C 1.32298 * 123.02524 * 40.42999 * 15 14 13 17 17 C 1.52484 * 105.43012 * 97.72992 * 5 4 2 18 18 C 1.46231 * 114.24167 * 270.54631 * 17 5 4 19 19 N 1.50169 * 107.53378 * 58.40097 * 18 17 5 20 20 C 1.36929 * 120.53458 * 109.61470 * 19 18 17 21 21 H 1.08001 * 120.00015 * 156.65193 * 20 19 18 22 22 C 1.38815 * 120.00186 * 336.64918 * 20 19 18 23 23 N 1.31621 * 119.99701 * 340.44905 * 22 20 19 24 24 Si 1.86796 * 120.00133 * 160.44401 * 22 20 19 25 25 H 1.48511 * 109.47193 * 90.00392 * 24 22 20 26 26 H 1.48501 * 109.47257 * 210.00121 * 24 22 20 27 27 H 1.48497 * 109.47396 * 330.00675 * 24 22 20 28 28 C 1.43433 * 118.92970 * 289.59210 * 19 18 17 29 29 H 1.08993 * 109.47402 * 300.27332 * 1 2 3 30 30 H 1.09005 * 109.46890 * 60.27377 * 1 2 3 31 31 H 1.09000 * 109.47406 * 180.26777 * 1 2 3 32 32 H 1.08991 * 109.47307 * 179.72206 * 3 2 1 33 33 H 1.08996 * 109.47195 * 299.73132 * 3 2 1 34 34 H 1.09002 * 109.46706 * 59.72422 * 3 2 1 35 35 H 1.09002 * 109.21087 * 201.68384 * 4 2 1 36 36 H 1.09001 * 109.20577 * 321.03934 * 4 2 1 37 37 H 0.97007 * 119.99675 * 334.99325 * 7 5 4 38 38 H 1.09010 * 109.46266 * 60.01688 * 10 8 7 39 39 H 1.08002 * 119.20641 * 123.31805 * 11 10 8 40 40 H 1.08000 * 118.51527 * 181.02509 * 12 11 10 41 41 H 1.07998 * 117.39970 * 139.55015 * 13 12 11 42 42 H 1.07997 * 117.40541 * 180.02562 * 14 13 12 43 43 H 1.07997 * 118.48959 * 220.45447 * 15 14 13 44 44 H 1.07991 * 119.20556 * 178.99801 * 16 15 14 45 45 H 1.09003 * 108.54244 * 149.30852 * 17 5 4 46 46 H 1.08999 * 108.41761 * 31.68289 * 17 5 4 47 47 H 1.09006 * 109.84138 * 298.89751 * 18 17 5 48 48 H 1.08995 * 109.85087 * 177.91424 * 18 17 5 49 49 H 0.97006 * 119.99347 * 179.97438 * 23 22 20 50 50 H 1.09007 * 108.16298 * 329.85406 * 28 19 18 51 51 H 1.08995 * 108.00571 * 213.15553 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4435 0.0000 4 6 2.0432 -0.7244 1.2686 5 6 2.0209 -2.2133 1.0776 6 1 1.3255 -2.4813 0.2821 7 7 1.6455 -2.8793 2.3273 8 6 1.0808 -4.1026 2.2958 9 8 0.8838 -4.6523 1.2329 10 6 0.6952 -4.7879 3.5814 11 6 1.9172 -4.9734 4.4362 12 6 2.9802 -5.6256 3.9941 13 6 3.0631 -6.1897 2.6586 14 6 2.0740 -6.8155 2.0283 15 6 0.7454 -7.0388 2.5699 16 6 0.0907 -6.1288 3.2725 17 6 3.4446 -2.5935 0.6857 18 6 3.7000 -2.5614 -0.7538 19 7 3.4056 -1.1696 -1.2346 20 6 4.4211 -0.3416 -1.6323 21 1 4.2179 0.4760 -2.3081 22 6 5.7117 -0.5530 -1.1670 23 7 5.9105 -1.2693 -0.0808 24 14 7.1663 0.1788 -2.0824 25 1 7.4602 1.5314 -1.5442 26 1 8.3542 -0.6941 -1.9029 27 1 6.8410 0.2811 -3.5277 28 6 2.0435 -0.7216 -1.2709 29 1 -0.3634 0.5180 0.8875 30 1 -0.3633 0.5096 -0.8925 31 1 -0.3634 -1.0276 0.0048 32 1 3.1271 1.4456 0.0050 33 1 1.6768 1.9552 -0.8923 34 1 1.6688 1.9580 0.8875 35 1 3.0645 -0.4047 1.4757 36 1 1.4070 -0.4617 2.1137 37 1 1.8035 -2.4398 3.1775 38 1 -0.0320 -4.1760 4.1153 39 1 1.9282 -4.5644 5.4357 40 1 3.8249 -5.7440 4.6566 41 1 4.0033 -6.0937 2.1360 42 1 2.2744 -7.1873 1.0344 43 1 0.2698 -7.9918 2.3913 44 1 -0.9020 -6.3547 3.6324 45 1 3.6476 -3.6002 1.0511 46 1 4.1323 -1.9036 1.1748 47 1 3.0491 -3.2736 -1.2610 48 1 4.7435 -2.8078 -0.9501 49 1 6.8125 -1.4173 0.2442 50 1 1.4059 -1.5872 -1.4511 51 1 1.9351 -0.0409 -2.1152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089399377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:06 Heat of formation + Delta-G solvation = 26.357694 kcal Electronic energy + Delta-G solvation = -30658.717785 eV Core-core repulsion = 26945.122063 eV Total energy + Delta-G solvation = -3713.595722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55257 -40.15857 -38.03210 -36.19155 -35.86582 -33.73440 -33.16524 -32.99701 -31.94264 -29.12426 -28.03987 -27.34031 -27.24318 -25.09115 -24.45137 -23.45997 -22.13055 -21.43809 -19.96042 -19.11201 -18.59398 -18.42656 -18.08012 -17.37328 -17.00671 -16.77827 -15.91160 -15.76618 -15.49258 -15.23392 -15.09572 -15.05184 -14.72251 -14.41693 -14.03555 -13.83160 -13.48426 -13.39125 -13.24212 -13.08496 -13.03021 -12.88072 -12.82001 -12.64791 -12.49837 -12.37656 -12.24572 -11.93927 -11.78340 -11.65039 -11.48738 -11.38522 -11.14986 -11.07555 -10.96802 -10.73648 -10.44304 -10.12745 -9.77144 -9.09232 -8.61458 -7.78570 -5.17898 0.36902 1.12658 1.46421 1.50468 1.57702 1.82084 2.28066 2.50893 2.56124 3.34413 3.58741 3.83637 3.91903 4.00463 4.05162 4.10107 4.11002 4.17545 4.23575 4.37213 4.48505 4.51394 4.57756 4.58797 4.75683 4.79753 4.81444 4.90752 4.94853 5.01081 5.02751 5.06835 5.10122 5.14957 5.23794 5.28034 5.36037 5.38808 5.48419 5.55005 5.55934 5.66419 5.69521 5.70869 5.79345 5.85626 5.87700 5.90620 5.95987 6.11177 6.44995 6.78808 7.20023 7.49110 7.93290 8.46271 9.25927 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004294 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.189619 B = 6519.163567 C = 7655.104654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.090 4.090 5 C 0.167 3.833 6 H 0.064 0.936 7 N -0.710 5.710 8 C 0.516 3.484 9 O -0.571 6.571 10 C -0.049 4.049 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.155 4.155 14 C -0.089 4.089 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.110 4.110 18 C 0.176 3.824 19 N -0.595 5.595 20 C -0.247 4.247 21 H 0.062 0.938 22 C -0.040 4.040 23 N -0.915 5.915 24 Si 0.950 3.050 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.280 1.280 28 C 0.164 3.836 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.015 0.985 46 H 0.076 0.924 47 H -0.001 1.001 48 H 0.057 0.943 49 H 0.245 0.755 50 H 0.025 0.975 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 -5.084 12.489 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.177 4.177 4 C -0.128 4.128 5 C 0.062 3.938 6 H 0.082 0.918 7 N -0.360 5.360 8 C 0.304 3.696 9 O -0.450 6.450 10 C -0.070 4.070 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.173 4.173 14 C -0.107 4.107 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.149 4.149 18 C 0.052 3.948 19 N -0.316 5.316 20 C -0.377 4.377 21 H 0.079 0.921 22 C -0.236 4.236 23 N -0.561 5.561 24 Si 0.780 3.220 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.205 1.205 28 C 0.036 3.964 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.150 0.850 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.033 0.967 46 H 0.094 0.906 47 H 0.017 0.983 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.573 -5.510 11.755 18.073 hybrid contribution 1.737 0.319 -0.590 1.862 sum -10.836 -5.191 11.165 16.402 Atomic orbital electron populations 1.21739 0.93379 1.01030 1.02167 1.21841 0.95315 0.95691 0.96104 1.21637 1.00289 0.95047 1.00760 1.21620 1.00763 0.92734 0.97721 1.19969 0.95228 0.92524 0.86062 0.91778 1.46031 1.62044 1.18406 1.09537 1.21018 0.76314 0.80819 0.91497 1.90674 1.55802 1.64887 1.33651 1.19397 0.98303 0.96269 0.93008 1.23177 0.91083 1.00045 1.01016 1.21277 0.99563 0.98603 0.94642 1.21089 0.99128 1.00861 0.96249 1.21076 0.93704 0.98009 0.97916 1.21182 0.94350 1.00348 0.97973 1.23035 0.99819 0.93380 0.98199 1.21023 0.96351 0.98941 0.98627 1.19880 0.98334 0.83912 0.92668 1.44267 1.01930 1.09685 1.75729 1.19277 0.88176 1.10171 1.20067 0.92063 1.25416 0.99907 1.01273 0.96962 1.70117 1.19735 1.44807 1.21448 0.85548 0.80131 0.77454 0.78876 1.21416 1.22393 1.20545 1.20611 0.85273 0.95601 0.94936 0.91396 0.92312 0.93801 0.94739 0.93133 0.92350 0.93469 0.90963 0.75729 0.84247 0.82480 0.85045 0.89121 0.88783 0.85041 0.83417 0.96673 0.90596 0.98255 0.92457 0.94585 0.95692 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.20 71.98 0.59 -2.87 16 2 C -0.09 -2.97 0.76 -50.90 -0.04 -3.01 16 3 C -0.12 -4.11 8.28 71.98 0.60 -3.52 16 4 C -0.09 -3.15 4.15 30.30 0.13 -3.02 16 5 C 0.17 6.15 2.16 43.89 0.09 6.24 16 6 H 0.06 2.67 5.15 -2.39 -0.01 2.66 16 7 N -0.71 -20.90 4.84 -447.79 -2.17 -23.07 16 8 C 0.52 15.51 5.48 87.66 0.48 15.99 16 9 O -0.57 -22.11 13.32 -3.02 -0.04 -22.15 16 10 C -0.05 -1.00 2.89 -13.29 -0.04 -1.04 16 11 C -0.14 -2.53 8.89 24.48 0.22 -2.31 16 12 C -0.12 -2.88 9.58 22.98 0.22 -2.66 16 13 C -0.16 -4.60 8.53 22.89 0.20 -4.40 16 14 C -0.09 -2.64 7.35 22.89 0.17 -2.47 16 15 C -0.12 -2.95 9.09 22.99 0.21 -2.74 16 16 C -0.13 -2.63 8.78 24.49 0.21 -2.42 16 17 C -0.11 -4.93 4.74 28.34 0.13 -4.79 16 18 C 0.18 8.85 5.24 83.58 0.44 9.29 16 19 N -0.59 -29.43 2.60 -707.83 -1.84 -31.27 16 20 C -0.25 -13.21 8.94 84.04 0.75 -12.46 16 21 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 22 C -0.04 -2.15 4.91 84.86 0.42 -1.74 16 23 N -0.91 -51.08 9.43 21.65 0.20 -50.87 16 24 Si 0.95 44.66 29.60 68.60 2.03 46.69 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 28 C 0.16 6.89 4.00 87.60 0.35 7.24 16 29 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.26 7.57 -2.39 -0.02 1.24 16 32 H 0.03 1.43 7.45 -2.39 -0.02 1.42 16 33 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.99 6.64 -2.39 -0.02 1.97 16 36 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 37 H 0.41 9.54 8.41 -92.70 -0.78 8.76 16 38 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.09 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.09 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.15 2.12 8.06 -2.92 -0.02 2.10 16 45 H 0.01 0.69 8.02 -2.39 -0.02 0.67 16 46 H 0.08 3.83 5.28 -2.39 -0.01 3.82 16 47 H 0.00 -0.03 8.13 -2.38 -0.02 -0.05 16 48 H 0.06 3.23 6.05 -2.39 -0.01 3.21 16 49 H 0.24 13.52 8.31 -92.70 -0.77 12.75 16 50 H 0.02 1.05 6.69 -2.38 -0.02 1.03 16 51 H 0.03 1.19 7.81 -2.39 -0.02 1.17 16 Total: -1.00 -66.10 383.19 3.44 -62.66 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.13 Total: 28.71 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.13 Total: -10.71 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.81 Total: -105.21 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.04 Total: -22.15 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.10 3.44 -62.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089399377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.018 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds