Wall clock time and date at job start Tue Mar 31 2020 15:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.49523 * 2 1 4 4 C 1.53035 * 109.50084 * 120.06372 * 2 1 3 5 5 C 1.53043 * 109.53750 * 58.58908 * 4 2 1 6 6 C 1.53192 * 109.31135 * 61.36260 * 5 4 2 7 7 H 1.09005 * 109.58287 * 65.16131 * 6 5 4 8 8 C 1.53005 * 109.70423 * 185.50863 * 6 5 4 9 9 N 1.46500 * 109.46897 * 294.71311 * 8 6 5 10 10 C 1.34777 * 119.99539 * 184.10976 * 9 8 6 11 11 O 1.21278 * 120.00450 * 5.38911 * 10 9 8 12 12 C 1.50701 * 119.99849 * 185.38737 * 10 9 8 13 13 C 1.50292 * 109.46990 * 308.41619 * 12 10 9 14 14 C 1.32319 * 121.60057 * 303.32943 * 13 12 10 15 15 C 1.45205 * 123.00533 * 1.01242 * 14 13 12 16 16 C 1.32941 * 125.19707 * 319.52993 * 15 14 13 17 17 C 1.45201 * 125.19962 * 0.02562 * 16 15 14 18 18 C 1.32296 * 123.02226 * 40.43677 * 17 16 15 19 19 N 1.46922 * 108.77983 * 305.36727 * 6 5 4 20 20 C 1.36932 * 120.63465 * 233.58344 * 19 6 5 21 21 H 1.08009 * 119.99697 * 38.18439 * 20 19 6 22 22 C 1.38811 * 120.00338 * 218.18641 * 20 19 6 23 23 N 1.31619 * 119.99807 * 9.69643 * 22 20 19 24 24 Si 1.86801 * 120.00114 * 189.69231 * 22 20 19 25 25 H 1.48494 * 109.46955 * 184.99788 * 24 22 20 26 26 H 1.48499 * 109.47237 * 305.00465 * 24 22 20 27 27 H 1.48503 * 109.46763 * 65.00344 * 24 22 20 28 28 C 1.46926 * 118.73602 * 53.86230 * 19 6 5 29 29 H 1.08991 * 109.47098 * 299.93081 * 1 2 3 30 30 H 1.08998 * 109.46995 * 59.94038 * 1 2 3 31 31 H 1.09005 * 109.46540 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47158 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47765 * 300.06528 * 3 2 1 34 34 H 1.09005 * 109.47313 * 60.06414 * 3 2 1 35 35 H 1.08998 * 109.46110 * 298.57015 * 4 2 1 36 36 H 1.08997 * 109.45284 * 178.59841 * 4 2 1 37 37 H 1.08998 * 109.49570 * 301.42051 * 5 4 2 38 38 H 1.09003 * 109.52905 * 181.33747 * 5 4 2 39 39 H 1.08993 * 109.46861 * 54.71118 * 8 6 5 40 40 H 1.08994 * 109.47055 * 174.71566 * 8 6 5 41 41 H 0.97004 * 120.00409 * 4.10859 * 9 8 6 42 42 H 1.08998 * 109.47204 * 68.39925 * 12 10 9 43 43 H 1.07997 * 119.20533 * 123.31888 * 13 12 10 44 44 H 1.08003 * 118.50960 * 181.01683 * 14 13 12 45 45 H 1.07996 * 117.40186 * 139.54902 * 15 14 13 46 46 H 1.08007 * 117.39988 * 180.02562 * 16 15 14 47 47 H 1.08001 * 118.49423 * 220.46124 * 17 16 15 48 48 H 1.07999 * 119.20369 * 179.04598 * 18 17 16 49 49 H 0.96999 * 120.00268 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58995 * 65.92212 * 28 19 6 51 51 H 1.08996 * 109.59049 * 186.35341 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5031 -2.1554 1.2666 6 6 2.0141 -2.9039 0.0315 7 1 3.0981 -3.0042 0.0876 8 6 1.3733 -4.2919 -0.0323 9 7 1.8252 -5.0912 1.1092 10 6 1.4537 -6.3823 1.2169 11 8 0.8278 -6.9099 0.3221 12 6 1.8161 -7.1703 2.4493 13 6 3.2897 -7.0378 2.7132 14 6 4.1900 -7.3725 1.8031 15 6 3.8358 -7.8681 0.4850 16 6 2.8517 -8.7239 0.2271 17 6 1.9665 -9.3055 1.2204 18 6 1.4725 -8.6178 2.2369 19 7 1.6516 -2.1384 -1.1691 20 6 0.9641 -2.7319 -2.1938 21 1 0.1851 -3.4483 -1.9779 22 6 1.2683 -2.4130 -3.5101 23 7 2.3353 -1.6924 -3.7829 24 14 0.1633 -3.0068 -4.8943 25 1 0.7662 -2.6400 -6.2008 26 1 0.0175 -4.4824 -4.8130 27 1 -1.1724 -2.3698 -4.7692 28 6 2.0463 -0.7256 -1.2519 29 1 -0.3633 0.5127 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1306 1.4418 -0.0005 33 1 1.6766 1.9567 -0.8893 34 1 1.6784 1.9560 0.8906 35 1 1.6988 -0.1952 2.1389 36 1 3.1305 -0.7440 1.2352 37 1 0.4134 -2.1351 1.2545 38 1 1.8477 -2.6626 2.1678 39 1 0.2884 -4.1929 0.0001 40 1 1.6657 -4.7847 -0.9595 41 1 2.3918 -4.6914 1.7874 42 1 1.2583 -6.7862 3.3032 43 1 3.6220 -6.6601 3.6689 44 1 5.2362 -7.2727 2.0519 45 1 4.4183 -7.5135 -0.3524 46 1 2.6984 -9.0093 -0.8032 47 1 1.6992 -10.3476 1.1252 48 1 0.8068 -9.1086 2.9313 49 1 2.5481 -1.4698 -4.7027 50 1 3.1328 -0.6518 -1.2983 51 1 1.6090 -0.2756 -2.1431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089649017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:26 Heat of formation + Delta-G solvation = 25.120894 kcal Electronic energy + Delta-G solvation = -29857.343059 eV Core-core repulsion = 26143.693705 eV Total energy + Delta-G solvation = -3713.649353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.21213 -38.64906 -37.07976 -34.97551 -33.65470 -32.57575 -32.22415 -31.57741 -29.97268 -27.72823 -26.59944 -26.17355 -25.33356 -23.62213 -23.37432 -22.22441 -20.78739 -19.96726 -18.57955 -17.85840 -17.51490 -17.14633 -16.68708 -16.01017 -15.44227 -14.83530 -14.65221 -14.27284 -14.14004 -13.94613 -13.70361 -13.63073 -13.23026 -13.20102 -12.95530 -12.59054 -12.47405 -12.20646 -12.15251 -11.94348 -11.56831 -11.35843 -11.23415 -11.15393 -10.91604 -10.79819 -10.79208 -10.51721 -10.41295 -10.21801 -10.07151 -9.97055 -9.77824 -9.61226 -9.42372 -9.21950 -9.20772 -8.52634 -8.43559 -8.16183 -6.49114 -5.78140 -3.32314 1.26998 2.02226 2.99173 3.23790 3.41177 3.45394 3.48571 3.68182 4.50829 4.72114 4.81941 4.94164 5.10738 5.14218 5.28375 5.29340 5.33111 5.44677 5.50075 5.58032 5.61088 5.63648 5.74855 5.90897 5.92773 5.98268 6.06946 6.14070 6.21335 6.25467 6.37976 6.42244 6.43858 6.46472 6.47246 6.52617 6.54208 6.67593 6.75896 6.81781 6.82952 6.88660 6.92686 6.93196 7.05303 7.09354 7.15588 7.39704 7.64815 7.84864 7.95282 8.52081 8.66776 9.23633 9.82541 10.44706 11.29123 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.004152 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.128930 B = 6742.897292 C = 8235.738241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.133 4.133 6 C 0.167 3.833 7 H 0.027 0.973 8 C 0.132 3.868 9 N -0.722 5.722 10 C 0.519 3.481 11 O -0.532 6.532 12 C -0.049 4.049 13 C -0.152 4.152 14 C -0.103 4.103 15 C -0.141 4.141 16 C -0.084 4.084 17 C -0.106 4.106 18 C -0.124 4.124 19 N -0.579 5.579 20 C -0.259 4.259 21 H 0.063 0.937 22 C 0.017 3.983 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.291 1.291 26 H -0.279 1.279 27 H -0.283 1.283 28 C 0.194 3.806 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.393 0.607 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.254 0.746 50 H 0.018 0.982 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -6.304 14.974 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.134 4.134 5 C -0.172 4.172 6 C 0.060 3.940 7 H 0.044 0.956 8 C 0.009 3.991 9 N -0.373 5.373 10 C 0.304 3.696 11 O -0.409 6.409 12 C -0.070 4.070 13 C -0.170 4.170 14 C -0.121 4.121 15 C -0.159 4.159 16 C -0.102 4.102 17 C -0.124 4.124 18 C -0.143 4.143 19 N -0.302 5.302 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.183 4.183 23 N -0.540 5.540 24 Si 0.726 3.274 25 H -0.217 1.217 26 H -0.205 1.205 27 H -0.209 1.209 28 C 0.068 3.932 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.227 0.773 42 H 0.123 0.877 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.018 -6.617 14.103 15.708 hybrid contribution -0.158 0.014 -0.498 0.523 sum 1.860 -6.603 13.605 15.236 Atomic orbital electron populations 1.21691 0.95127 1.02085 0.99209 1.21324 0.95855 0.94324 0.98212 1.21767 1.00389 0.96520 1.00507 1.21413 0.99548 0.95527 0.96875 1.22142 1.01208 0.96044 0.97788 1.20545 0.95649 0.89343 0.88484 0.95550 1.21501 0.98588 0.90885 0.88104 1.46042 1.52756 1.11224 1.27313 1.20243 0.79491 0.81912 0.87928 1.90703 1.40528 1.69283 1.40337 1.19260 0.95335 0.94414 0.98036 1.22948 0.92271 1.02091 0.99725 1.21139 0.99325 0.98356 0.93293 1.21066 0.99820 0.98669 0.96363 1.21081 0.93658 0.96579 0.98835 1.20995 0.97763 0.99378 0.94228 1.22670 0.99567 0.93926 0.98119 1.43809 1.65336 1.05407 1.15607 1.18974 1.11842 1.23512 0.84595 0.91939 1.25282 0.95891 0.99276 0.97837 1.69968 1.24776 1.40741 1.18543 0.86466 0.80289 0.79055 0.81576 1.21674 1.20517 1.20941 1.20808 0.95945 0.83053 0.93402 0.95079 0.93608 0.91602 0.93330 0.93036 0.93975 0.93806 0.93011 0.91800 0.93722 0.92050 0.90129 0.77313 0.87689 0.86119 0.86429 0.86848 0.86922 0.86675 0.86465 0.93577 0.96376 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.99 37.16 0.30 -1.92 16 2 C -0.10 -1.72 0.77 -154.16 -0.12 -1.84 16 3 C -0.13 -2.12 8.48 37.16 0.32 -1.81 16 4 C -0.10 -1.56 4.71 -26.69 -0.13 -1.68 16 5 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 6 C 0.17 3.28 3.00 -67.60 -0.20 3.08 16 7 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.13 2.57 3.92 -4.04 -0.02 2.55 16 9 N -0.72 -11.22 5.25 -60.30 -0.32 -11.53 16 10 C 0.52 8.29 5.32 -10.98 -0.06 8.23 16 11 O -0.53 -10.67 14.26 5.56 0.08 -10.59 16 12 C -0.05 -0.58 2.95 -94.48 -0.28 -0.86 16 13 C -0.15 -1.56 8.48 -36.43 -0.31 -1.87 16 14 C -0.10 -1.16 9.58 -38.74 -0.37 -1.53 16 15 C -0.14 -1.89 8.53 -38.65 -0.33 -2.22 16 16 C -0.08 -1.16 7.66 -38.65 -0.30 -1.46 16 17 C -0.11 -1.33 9.12 -38.75 -0.35 -1.68 16 18 C -0.12 -1.47 8.70 -36.44 -0.32 -1.79 16 19 N -0.58 -13.59 2.37 -164.51 -0.39 -13.98 16 20 C -0.26 -6.82 8.21 -15.06 -0.12 -6.95 16 21 H 0.06 1.67 6.62 -52.48 -0.35 1.32 16 22 C 0.02 0.48 5.03 -17.43 -0.09 0.39 16 23 N -0.90 -25.53 11.51 55.49 0.64 -24.89 16 24 Si 0.90 21.85 29.56 -169.99 -5.03 16.83 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 28 C 0.19 4.39 3.94 -3.48 -0.01 4.38 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 38 H 0.04 0.61 7.28 -51.93 -0.38 0.24 16 39 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 40 H 0.08 1.87 7.41 -51.93 -0.38 1.49 16 41 H 0.39 5.10 7.11 -40.82 -0.29 4.81 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 47 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 48 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 1.98 6.60 -51.93 -0.34 1.63 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -30.44 388.62 -10.36 -40.79 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.68 Total: 6.81 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.52 Total: -9.29 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.07 Total: -50.40 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.44 -10.36 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089649017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.915 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds