Wall clock time and date at job start Tue Mar 31 2020 15:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.49523 * 2 1 4 4 C 1.53035 * 109.50084 * 120.06372 * 2 1 3 5 5 C 1.53043 * 109.53750 * 58.58908 * 4 2 1 6 6 C 1.53192 * 109.31135 * 61.36260 * 5 4 2 7 7 H 1.09005 * 109.58287 * 65.16131 * 6 5 4 8 8 C 1.53005 * 109.70423 * 185.50863 * 6 5 4 9 9 N 1.46500 * 109.46897 * 294.71311 * 8 6 5 10 10 C 1.34777 * 119.99539 * 184.10976 * 9 8 6 11 11 O 1.21278 * 120.00450 * 5.38911 * 10 9 8 12 12 C 1.50701 * 119.99849 * 185.38737 * 10 9 8 13 13 C 1.50292 * 109.46990 * 308.41619 * 12 10 9 14 14 C 1.32319 * 121.60057 * 303.32943 * 13 12 10 15 15 C 1.45205 * 123.00533 * 1.01242 * 14 13 12 16 16 C 1.32941 * 125.19707 * 319.52993 * 15 14 13 17 17 C 1.45201 * 125.19962 * 0.02562 * 16 15 14 18 18 C 1.32296 * 123.02226 * 40.43677 * 17 16 15 19 19 N 1.46922 * 108.77983 * 305.36727 * 6 5 4 20 20 C 1.36932 * 120.63465 * 233.58344 * 19 6 5 21 21 H 1.08009 * 119.99697 * 38.18439 * 20 19 6 22 22 C 1.38811 * 120.00338 * 218.18641 * 20 19 6 23 23 N 1.31619 * 119.99807 * 9.69643 * 22 20 19 24 24 Si 1.86801 * 120.00114 * 189.69231 * 22 20 19 25 25 H 1.48494 * 109.46955 * 184.99788 * 24 22 20 26 26 H 1.48499 * 109.47237 * 305.00465 * 24 22 20 27 27 H 1.48503 * 109.46763 * 65.00344 * 24 22 20 28 28 C 1.46926 * 118.73602 * 53.86230 * 19 6 5 29 29 H 1.08991 * 109.47098 * 299.93081 * 1 2 3 30 30 H 1.08998 * 109.46995 * 59.94038 * 1 2 3 31 31 H 1.09005 * 109.46540 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47158 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47765 * 300.06528 * 3 2 1 34 34 H 1.09005 * 109.47313 * 60.06414 * 3 2 1 35 35 H 1.08998 * 109.46110 * 298.57015 * 4 2 1 36 36 H 1.08997 * 109.45284 * 178.59841 * 4 2 1 37 37 H 1.08998 * 109.49570 * 301.42051 * 5 4 2 38 38 H 1.09003 * 109.52905 * 181.33747 * 5 4 2 39 39 H 1.08993 * 109.46861 * 54.71118 * 8 6 5 40 40 H 1.08994 * 109.47055 * 174.71566 * 8 6 5 41 41 H 0.97004 * 120.00409 * 4.10859 * 9 8 6 42 42 H 1.08998 * 109.47204 * 68.39925 * 12 10 9 43 43 H 1.07997 * 119.20533 * 123.31888 * 13 12 10 44 44 H 1.08003 * 118.50960 * 181.01683 * 14 13 12 45 45 H 1.07996 * 117.40186 * 139.54902 * 15 14 13 46 46 H 1.08007 * 117.39988 * 180.02562 * 16 15 14 47 47 H 1.08001 * 118.49423 * 220.46124 * 17 16 15 48 48 H 1.07999 * 119.20369 * 179.04598 * 18 17 16 49 49 H 0.96999 * 120.00268 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58995 * 65.92212 * 28 19 6 51 51 H 1.08996 * 109.59049 * 186.35341 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5031 -2.1554 1.2666 6 6 2.0141 -2.9039 0.0315 7 1 3.0981 -3.0042 0.0876 8 6 1.3733 -4.2919 -0.0323 9 7 1.8252 -5.0912 1.1092 10 6 1.4537 -6.3823 1.2169 11 8 0.8278 -6.9099 0.3221 12 6 1.8161 -7.1703 2.4493 13 6 3.2897 -7.0378 2.7132 14 6 4.1900 -7.3725 1.8031 15 6 3.8358 -7.8681 0.4850 16 6 2.8517 -8.7239 0.2271 17 6 1.9665 -9.3055 1.2204 18 6 1.4725 -8.6178 2.2369 19 7 1.6516 -2.1384 -1.1691 20 6 0.9641 -2.7319 -2.1938 21 1 0.1851 -3.4483 -1.9779 22 6 1.2683 -2.4130 -3.5101 23 7 2.3353 -1.6924 -3.7829 24 14 0.1633 -3.0068 -4.8943 25 1 0.7662 -2.6400 -6.2008 26 1 0.0175 -4.4824 -4.8130 27 1 -1.1724 -2.3698 -4.7692 28 6 2.0463 -0.7256 -1.2519 29 1 -0.3633 0.5127 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1306 1.4418 -0.0005 33 1 1.6766 1.9567 -0.8893 34 1 1.6784 1.9560 0.8906 35 1 1.6988 -0.1952 2.1389 36 1 3.1305 -0.7440 1.2352 37 1 0.4134 -2.1351 1.2545 38 1 1.8477 -2.6626 2.1678 39 1 0.2884 -4.1929 0.0001 40 1 1.6657 -4.7847 -0.9595 41 1 2.3918 -4.6914 1.7874 42 1 1.2583 -6.7862 3.3032 43 1 3.6220 -6.6601 3.6689 44 1 5.2362 -7.2727 2.0519 45 1 4.4183 -7.5135 -0.3524 46 1 2.6984 -9.0093 -0.8032 47 1 1.6992 -10.3476 1.1252 48 1 0.8068 -9.1086 2.9313 49 1 2.5481 -1.4698 -4.7027 50 1 3.1328 -0.6518 -1.2983 51 1 1.6090 -0.2756 -2.1431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089649017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:23 Heat of formation + Delta-G solvation = 8.143782 kcal Electronic energy + Delta-G solvation = -29858.079242 eV Core-core repulsion = 26143.693705 eV Total energy + Delta-G solvation = -3714.385536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.41456 -40.17917 -38.23273 -36.46433 -35.42362 -33.86706 -33.17414 -32.91061 -31.73742 -29.12716 -28.01079 -27.42820 -27.10865 -24.97683 -24.44689 -23.88710 -22.08877 -21.58818 -19.73328 -19.43589 -18.51700 -18.31149 -18.06312 -17.38710 -17.03130 -16.45259 -16.11174 -15.79384 -15.33357 -15.28800 -15.14075 -15.02349 -14.79246 -14.64621 -14.41065 -14.01004 -13.76398 -13.39135 -13.23434 -13.09193 -12.95315 -12.88747 -12.86577 -12.77315 -12.56860 -12.49786 -12.26467 -12.12035 -11.90360 -11.81427 -11.52990 -11.25902 -11.20970 -10.98831 -10.85853 -10.80024 -10.52077 -10.19015 -9.94517 -9.16514 -8.47729 -7.86247 -5.42099 0.32857 1.10395 1.40576 1.41812 1.47880 1.77673 2.20526 2.38348 2.50970 3.28383 3.70478 3.80521 3.89860 3.99036 4.03818 4.06937 4.14571 4.16641 4.21455 4.25906 4.36908 4.40929 4.52105 4.55039 4.69519 4.78629 4.78909 4.90824 4.95582 5.01069 5.04195 5.04351 5.05550 5.12964 5.15676 5.20592 5.28362 5.37522 5.47951 5.53609 5.54983 5.57851 5.60952 5.68289 5.68744 5.78370 5.83698 5.86909 5.87768 5.91761 6.45621 6.70711 7.19745 7.41610 7.86824 8.41924 9.16984 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.004152 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.128930 B = 6742.897292 C = 8235.738241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.092 4.092 5 C -0.122 4.122 6 C 0.167 3.833 7 H 0.019 0.981 8 C 0.154 3.846 9 N -0.710 5.710 10 C 0.515 3.485 11 O -0.580 6.580 12 C -0.048 4.048 13 C -0.135 4.135 14 C -0.122 4.122 15 C -0.151 4.151 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.124 4.124 19 N -0.594 5.594 20 C -0.252 4.252 21 H 0.053 0.947 22 C -0.034 4.034 23 N -0.927 5.927 24 Si 0.948 3.052 25 H -0.291 1.291 26 H -0.284 1.284 27 H -0.277 1.277 28 C 0.203 3.797 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.411 0.589 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.131 0.869 48 H 0.148 0.852 49 H 0.249 0.751 50 H -0.009 1.009 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -5.793 19.592 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.130 4.130 5 C -0.161 4.161 6 C 0.061 3.939 7 H 0.036 0.964 8 C 0.029 3.971 9 N -0.362 5.362 10 C 0.302 3.698 11 O -0.459 6.459 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.140 4.140 15 C -0.169 4.169 16 C -0.123 4.123 17 C -0.143 4.143 18 C -0.142 4.142 19 N -0.318 5.318 20 C -0.382 4.382 21 H 0.071 0.929 22 C -0.231 4.231 23 N -0.572 5.572 24 Si 0.776 3.224 25 H -0.217 1.217 26 H -0.211 1.211 27 H -0.203 1.203 28 C 0.077 3.923 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.248 0.752 42 H 0.161 0.839 43 H 0.181 0.819 44 H 0.158 0.842 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.149 0.851 48 H 0.166 0.834 49 H 0.058 0.942 50 H 0.009 0.991 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.785 -6.101 18.773 19.820 hybrid contribution -0.081 -0.195 -1.950 1.961 sum 1.704 -6.295 16.823 18.043 Atomic orbital electron populations 1.21615 0.94832 1.00959 1.00029 1.21220 0.95985 0.95447 0.96661 1.21720 1.00533 0.94898 1.01544 1.21409 0.99661 0.95094 0.96804 1.22026 1.00810 0.96273 0.96956 1.20675 0.95183 0.89445 0.88599 0.96353 1.20944 0.97411 0.90956 0.87781 1.45827 1.52897 1.11142 1.26347 1.21153 0.78195 0.81660 0.88790 1.90693 1.42611 1.70128 1.42475 1.19428 0.97139 0.93743 0.96567 1.23257 0.90742 1.00423 1.00860 1.21323 1.00999 0.99359 0.92335 1.21220 0.99392 0.98606 0.97647 1.21172 0.94868 0.97506 0.98709 1.21183 0.98165 1.00486 0.94492 1.23048 0.99109 0.93905 0.98161 1.44017 1.65251 1.06309 1.16202 1.19091 1.11304 1.22308 0.85546 0.92894 1.25854 0.97204 1.00279 0.99719 1.70095 1.26331 1.42484 1.18279 0.85654 0.79154 0.78123 0.79422 1.21712 1.21056 1.20271 1.20596 0.93987 0.83102 0.94594 0.91729 0.95252 0.93671 0.93129 0.94055 0.90869 0.90274 0.92820 0.92307 0.89764 0.93722 0.95078 0.75248 0.83896 0.81871 0.84221 0.88468 0.88840 0.85116 0.83446 0.94216 0.99117 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 7.99 71.98 0.58 -3.43 16 2 C -0.09 -3.17 0.77 -51.96 -0.04 -3.21 16 3 C -0.13 -3.81 8.48 71.98 0.61 -3.19 16 4 C -0.09 -2.65 4.71 30.62 0.14 -2.50 16 5 C -0.12 -3.63 4.84 30.67 0.15 -3.48 16 6 C 0.17 6.55 3.00 44.98 0.13 6.69 16 7 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 8 C 0.15 6.12 3.92 86.38 0.34 6.46 16 9 N -0.71 -21.12 5.25 -463.07 -2.43 -23.55 16 10 C 0.51 15.83 5.32 87.66 0.47 16.30 16 11 O -0.58 -23.73 14.26 -3.02 -0.04 -23.77 16 12 C -0.05 -0.96 2.95 -13.29 -0.04 -1.00 16 13 C -0.14 -2.20 8.48 24.48 0.21 -1.99 16 14 C -0.12 -2.50 9.58 22.98 0.22 -2.28 16 15 C -0.15 -4.14 8.53 22.89 0.20 -3.94 16 16 C -0.10 -3.04 7.66 22.89 0.18 -2.86 16 17 C -0.13 -3.07 9.12 22.99 0.21 -2.86 16 18 C -0.12 -2.60 8.70 24.49 0.21 -2.39 16 19 N -0.59 -28.81 2.37 -674.38 -1.60 -30.41 16 20 C -0.25 -13.87 8.21 84.03 0.69 -13.18 16 21 H 0.05 2.98 6.62 -2.91 -0.02 2.96 16 22 C -0.03 -1.93 5.03 84.86 0.43 -1.50 16 23 N -0.93 -55.44 11.51 21.65 0.25 -55.19 16 24 Si 0.95 46.93 29.56 68.60 2.03 48.96 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 28 C 0.20 9.47 3.94 86.51 0.34 9.81 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.04 1.72 5.97 -2.38 -0.01 1.71 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.86 6.33 -2.39 -0.02 1.85 16 38 H 0.08 1.88 7.28 -2.39 -0.02 1.86 16 39 H 0.04 1.92 7.68 -2.39 -0.02 1.90 16 40 H 0.03 1.53 7.41 -2.39 -0.02 1.52 16 41 H 0.41 9.30 7.11 -92.71 -0.66 8.64 16 42 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.10 2.85 8.06 -2.91 -0.02 2.82 16 46 H 0.09 2.92 8.06 -2.91 -0.02 2.89 16 47 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 48 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 49 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 50 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 51 H 0.04 2.00 6.60 -2.39 -0.02 1.99 16 Total: -1.00 -72.78 388.62 3.46 -69.32 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.24 Total: 23.21 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.02 Total: -8.56 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.78 Total: -109.15 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.04 Total: -23.77 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -72.78 3.46 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089649017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.460 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds