Wall clock time and date at job start Tue Mar 31 2020 15:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.52602 * 2 1 4 4 C 1.53042 * 109.49829 * 120.08424 * 2 1 3 5 5 C 1.53037 * 109.53550 * 181.31134 * 4 2 1 6 6 C 1.53188 * 109.31655 * 298.63431 * 5 4 2 7 7 H 1.09004 * 109.58652 * 294.85055 * 6 5 4 8 8 C 1.52996 * 109.58599 * 174.42399 * 6 5 4 9 9 N 1.46503 * 109.47215 * 180.57708 * 8 6 5 10 10 C 1.34770 * 120.00197 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00395 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.50292 * 109.46200 * 300.02898 * 12 10 9 14 14 C 1.32321 * 121.60492 * 303.31868 * 13 12 10 15 15 C 1.45205 * 122.99842 * 1.02249 * 14 13 12 16 16 C 1.32940 * 125.20015 * 319.52092 * 15 14 13 17 17 C 1.45199 * 125.19759 * 0.02602 * 16 15 14 18 18 C 1.32292 * 123.02681 * 40.43116 * 17 16 15 19 19 N 1.46925 * 108.77372 * 54.63442 * 6 5 4 20 20 C 1.36938 * 120.62640 * 126.36743 * 19 6 5 21 21 H 1.07998 * 120.00590 * 327.66767 * 20 19 6 22 22 C 1.38815 * 119.99718 * 147.66703 * 20 19 6 23 23 N 1.31624 * 119.99956 * 337.67531 * 22 20 19 24 24 Si 1.86804 * 119.99944 * 157.67940 * 22 20 19 25 25 H 1.48498 * 109.46801 * 269.99800 * 24 22 20 26 26 H 1.48497 * 109.47234 * 30.00184 * 24 22 20 27 27 H 1.48501 * 109.47040 * 149.99991 * 24 22 20 28 28 C 1.46920 * 118.74212 * 306.64422 * 19 6 5 29 29 H 1.09003 * 109.47089 * 299.91473 * 1 2 3 30 30 H 1.09005 * 109.47230 * 59.91293 * 1 2 3 31 31 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47107 * 180.08416 * 3 2 1 33 33 H 1.09000 * 109.47222 * 300.08413 * 3 2 1 34 34 H 1.09001 * 109.46947 * 60.08238 * 3 2 1 35 35 H 1.09003 * 109.45711 * 61.29588 * 4 2 1 36 36 H 1.08998 * 109.45682 * 301.33461 * 4 2 1 37 37 H 1.09002 * 109.49714 * 178.67990 * 5 4 2 38 38 H 1.09000 * 109.52271 * 58.60357 * 5 4 2 39 39 H 1.09001 * 109.47262 * 300.57213 * 8 6 5 40 40 H 1.09006 * 109.47426 * 60.57342 * 8 6 5 41 41 H 0.97001 * 119.99772 * 359.97438 * 9 8 6 42 42 H 1.09003 * 109.46185 * 60.00194 * 12 10 9 43 43 H 1.08004 * 119.20160 * 123.31667 * 13 12 10 44 44 H 1.07999 * 118.51036 * 181.02564 * 14 13 12 45 45 H 1.08002 * 117.39388 * 139.55015 * 15 14 13 46 46 H 1.08005 * 117.39822 * 180.02562 * 16 15 14 47 47 H 1.08006 * 118.48753 * 220.40661 * 17 16 15 48 48 H 1.08001 * 119.20446 * 179.04350 * 18 17 16 49 49 H 0.96994 * 120.00066 * 354.49563 * 23 22 20 50 50 H 1.08995 * 109.58837 * 173.14337 * 28 19 6 51 51 H 1.09001 * 109.58898 * 293.56936 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7232 1.2483 5 6 3.5708 -0.6952 1.2658 6 6 4.1052 -1.4268 0.0306 7 1 3.8374 -2.4820 0.0865 8 6 5.6272 -1.2835 -0.0319 9 7 6.1341 -1.9724 -1.2214 10 6 7.4560 -1.9797 -1.4838 11 8 8.2260 -1.4157 -0.7354 12 6 7.9776 -2.6888 -2.7070 13 6 7.6129 -4.1450 -2.6353 14 6 7.9723 -4.9002 -1.6099 15 6 8.7190 -4.3887 -0.4745 16 6 9.7262 -3.5240 -0.5464 17 6 10.2473 -2.9463 -1.7723 18 6 9.4726 -2.5484 -2.7681 19 7 3.5045 -0.8292 -1.1697 20 6 4.2935 -0.3785 -2.1941 21 1 5.2703 0.0311 -1.9835 22 6 3.8377 -0.4481 -3.5035 23 7 2.8942 -1.3070 -3.8271 24 14 4.5635 0.6769 -4.8062 25 1 3.7809 1.9376 -4.8632 26 1 5.9750 0.9855 -4.4631 27 1 4.5117 0.0018 -6.1279 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5152 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1313 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8892 34 1 1.6797 1.9557 0.8907 35 1 1.6967 -1.7574 1.2352 36 1 1.6582 -0.2246 2.1388 37 1 3.9335 -1.1898 2.1669 38 1 3.9164 0.3385 1.2542 39 1 5.8909 -0.2272 -0.0839 40 1 6.0707 -1.7253 0.8605 41 1 5.5184 -2.4238 -1.8197 42 1 7.5344 -2.2470 -3.5995 43 1 7.0436 -4.5859 -3.4403 44 1 7.6978 -5.9447 -1.6177 45 1 8.4337 -4.7391 0.5065 46 1 10.1940 -3.2277 0.3809 47 1 11.3167 -2.8358 -1.8758 48 1 9.9255 -2.1125 -3.6463 49 1 2.5736 -1.9453 -3.1710 50 1 1.7646 -0.1496 -2.1346 51 1 1.6019 -1.7149 -1.2976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089649018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:31 Heat of formation + Delta-G solvation = 27.955686 kcal Electronic energy + Delta-G solvation = -30485.998283 eV Core-core repulsion = 26772.471856 eV Total energy + Delta-G solvation = -3713.526427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.97537 -38.86153 -36.86928 -35.02610 -33.44159 -32.61352 -32.03493 -31.61449 -29.81674 -27.67864 -26.72284 -25.98851 -25.41398 -23.45648 -23.24388 -22.17299 -20.42212 -20.18480 -18.33753 -17.93418 -17.30733 -17.03298 -16.90250 -15.89674 -15.40197 -15.10404 -14.43035 -14.28691 -14.08607 -13.86528 -13.68139 -13.55860 -13.41007 -13.11511 -12.92757 -12.39379 -12.28455 -12.10255 -12.04534 -11.84800 -11.61465 -11.44499 -11.36657 -11.26692 -10.78816 -10.78147 -10.71729 -10.64241 -10.27522 -10.12521 -9.99113 -9.96946 -9.88966 -9.61145 -9.41529 -9.12542 -8.96430 -8.47269 -8.16434 -7.87646 -6.86156 -6.04926 -3.31284 1.47820 2.24942 3.22125 3.46135 3.48088 3.52983 3.63416 4.02541 4.51821 4.99006 5.05575 5.08610 5.18617 5.25321 5.29438 5.35533 5.38791 5.41714 5.53383 5.65138 5.66335 5.69112 5.80942 5.90442 5.93505 6.04591 6.09104 6.10884 6.14540 6.15477 6.23787 6.28972 6.37261 6.38845 6.39774 6.45269 6.56591 6.66344 6.74347 6.76270 6.83917 6.88120 6.94508 6.95113 6.98841 7.06989 7.16644 7.20565 7.30626 8.06920 8.38854 8.56700 9.01437 9.06523 9.79606 10.26506 11.18630 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004651 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.175713 B = 6018.784350 C = 7207.444602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.163 3.837 7 H 0.028 0.972 8 C 0.142 3.858 9 N -0.687 5.687 10 C 0.522 3.478 11 O -0.556 6.556 12 C -0.053 4.053 13 C -0.132 4.132 14 C -0.118 4.118 15 C -0.146 4.146 16 C -0.071 4.071 17 C -0.111 4.111 18 C -0.117 4.117 19 N -0.590 5.590 20 C -0.340 4.340 21 H 0.060 0.940 22 C -0.017 4.017 23 N -0.915 5.915 24 Si 1.055 2.945 25 H -0.294 1.294 26 H -0.292 1.292 27 H -0.290 1.290 28 C 0.168 3.832 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.412 0.588 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.269 0.731 50 H 0.075 0.925 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -4.338 5.784 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.056 3.944 7 H 0.045 0.955 8 C 0.017 3.983 9 N -0.337 5.337 10 C 0.307 3.693 11 O -0.436 6.436 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.136 4.136 15 C -0.164 4.164 16 C -0.089 4.089 17 C -0.129 4.129 18 C -0.135 4.135 19 N -0.315 5.315 20 C -0.470 4.470 21 H 0.078 0.922 22 C -0.220 4.220 23 N -0.555 5.555 24 Si 0.886 3.114 25 H -0.221 1.221 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.042 3.958 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.249 0.751 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.368 -3.475 4.705 7.939 hybrid contribution -0.328 -0.534 1.311 1.453 sum 5.040 -4.009 6.017 8.813 Atomic orbital electron populations 1.21788 0.95862 1.00906 1.00788 1.21040 0.93892 0.96491 0.97597 1.21708 1.02266 0.94835 0.99408 1.21405 0.95432 0.99533 0.96924 1.22001 0.95912 1.01378 0.97698 1.20705 0.90647 0.94737 0.88316 0.95483 1.21148 0.93306 0.97288 0.86540 1.45842 1.06709 1.54160 1.26948 1.20109 0.82605 0.80296 0.86298 1.90614 1.56637 1.46550 1.49793 1.19247 0.94588 0.94346 0.99280 1.22969 0.99599 0.93845 0.98618 1.21042 0.99116 0.99342 0.94103 1.20926 0.97114 1.00677 0.97683 1.20940 0.96510 0.94355 0.97129 1.20924 0.98947 0.99677 0.93387 1.22733 0.92840 0.99358 0.98607 1.44089 1.01064 1.69853 1.16483 1.19967 1.02015 1.38466 0.86529 0.92200 1.25705 0.99633 0.99879 0.96795 1.70754 1.30695 1.16905 1.37148 0.83635 0.75376 0.76180 0.76218 1.22125 1.21825 1.21627 1.20877 0.83900 0.96124 0.94899 0.93687 0.92942 0.93318 0.91458 0.93546 0.94852 0.92990 0.93439 0.93132 0.91586 0.91938 0.93240 0.75090 0.87434 0.86121 0.86797 0.87568 0.87427 0.86980 0.86588 0.91939 0.90688 0.96785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.48 37.16 0.32 -1.76 16 2 C -0.09 -1.54 0.77 -154.61 -0.12 -1.66 16 3 C -0.12 -2.20 7.98 37.16 0.30 -1.90 16 4 C -0.10 -1.52 4.71 -26.69 -0.13 -1.64 16 5 C -0.13 -2.16 5.03 -26.62 -0.13 -2.29 16 6 C 0.16 3.07 3.01 -67.60 -0.20 2.87 16 7 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 8 C 0.14 2.70 4.43 -4.04 -0.02 2.69 16 9 N -0.69 -13.25 3.76 -60.29 -0.23 -13.47 16 10 C 0.52 9.94 5.48 -10.99 -0.06 9.88 16 11 O -0.56 -11.82 13.67 5.55 0.08 -11.74 16 12 C -0.05 -0.86 2.89 -94.47 -0.27 -1.14 16 13 C -0.13 -1.89 8.89 -36.43 -0.32 -2.22 16 14 C -0.12 -1.62 9.58 -38.74 -0.37 -1.99 16 15 C -0.15 -2.10 8.53 -38.65 -0.33 -2.43 16 16 C -0.07 -1.05 7.35 -38.65 -0.28 -1.34 16 17 C -0.11 -1.60 9.09 -38.75 -0.35 -1.95 16 18 C -0.12 -1.74 8.78 -36.44 -0.32 -2.06 16 19 N -0.59 -12.77 2.23 -165.04 -0.37 -13.14 16 20 C -0.34 -8.22 6.81 -15.06 -0.10 -8.33 16 21 H 0.06 1.54 5.98 -52.49 -0.31 1.23 16 22 C -0.02 -0.43 4.73 -17.43 -0.08 -0.52 16 23 N -0.92 -24.80 12.57 55.49 0.70 -24.10 16 24 Si 1.06 24.13 29.97 -169.99 -5.10 19.04 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.17 3.55 3.34 -3.93 -0.01 3.54 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 39 H 0.06 1.33 7.42 -51.93 -0.39 0.95 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.41 8.36 7.27 -40.82 -0.30 8.06 16 42 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 48 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 49 H 0.27 7.34 6.68 -40.82 -0.27 7.07 16 50 H 0.07 1.83 6.59 -51.93 -0.34 1.49 16 51 H 0.01 0.31 7.82 -51.93 -0.41 -0.09 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -27.55 385.39 -10.25 -37.80 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -8.64 Total: 12.04 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.50 Total: -12.24 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.10 Total: -50.71 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.10 Total: 19.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.55 -10.25 -37.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089649018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.758 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds