Wall clock time and date at job start Tue Mar 31 2020 15:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.52602 * 2 1 4 4 C 1.53042 * 109.49829 * 120.08424 * 2 1 3 5 5 C 1.53037 * 109.53550 * 181.31134 * 4 2 1 6 6 C 1.53188 * 109.31655 * 298.63431 * 5 4 2 7 7 H 1.09004 * 109.58652 * 294.85055 * 6 5 4 8 8 C 1.52996 * 109.58599 * 174.42399 * 6 5 4 9 9 N 1.46503 * 109.47215 * 180.57708 * 8 6 5 10 10 C 1.34770 * 120.00197 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00395 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.50292 * 109.46200 * 300.02898 * 12 10 9 14 14 C 1.32321 * 121.60492 * 303.31868 * 13 12 10 15 15 C 1.45205 * 122.99842 * 1.02249 * 14 13 12 16 16 C 1.32940 * 125.20015 * 319.52092 * 15 14 13 17 17 C 1.45199 * 125.19759 * 0.02602 * 16 15 14 18 18 C 1.32292 * 123.02681 * 40.43116 * 17 16 15 19 19 N 1.46925 * 108.77372 * 54.63442 * 6 5 4 20 20 C 1.36938 * 120.62640 * 126.36743 * 19 6 5 21 21 H 1.07998 * 120.00590 * 327.66767 * 20 19 6 22 22 C 1.38815 * 119.99718 * 147.66703 * 20 19 6 23 23 N 1.31624 * 119.99956 * 337.67531 * 22 20 19 24 24 Si 1.86804 * 119.99944 * 157.67940 * 22 20 19 25 25 H 1.48498 * 109.46801 * 269.99800 * 24 22 20 26 26 H 1.48497 * 109.47234 * 30.00184 * 24 22 20 27 27 H 1.48501 * 109.47040 * 149.99991 * 24 22 20 28 28 C 1.46920 * 118.74212 * 306.64422 * 19 6 5 29 29 H 1.09003 * 109.47089 * 299.91473 * 1 2 3 30 30 H 1.09005 * 109.47230 * 59.91293 * 1 2 3 31 31 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47107 * 180.08416 * 3 2 1 33 33 H 1.09000 * 109.47222 * 300.08413 * 3 2 1 34 34 H 1.09001 * 109.46947 * 60.08238 * 3 2 1 35 35 H 1.09003 * 109.45711 * 61.29588 * 4 2 1 36 36 H 1.08998 * 109.45682 * 301.33461 * 4 2 1 37 37 H 1.09002 * 109.49714 * 178.67990 * 5 4 2 38 38 H 1.09000 * 109.52271 * 58.60357 * 5 4 2 39 39 H 1.09001 * 109.47262 * 300.57213 * 8 6 5 40 40 H 1.09006 * 109.47426 * 60.57342 * 8 6 5 41 41 H 0.97001 * 119.99772 * 359.97438 * 9 8 6 42 42 H 1.09003 * 109.46185 * 60.00194 * 12 10 9 43 43 H 1.08004 * 119.20160 * 123.31667 * 13 12 10 44 44 H 1.07999 * 118.51036 * 181.02564 * 14 13 12 45 45 H 1.08002 * 117.39388 * 139.55015 * 15 14 13 46 46 H 1.08005 * 117.39822 * 180.02562 * 16 15 14 47 47 H 1.08006 * 118.48753 * 220.40661 * 17 16 15 48 48 H 1.08001 * 119.20446 * 179.04350 * 18 17 16 49 49 H 0.96994 * 120.00066 * 354.49563 * 23 22 20 50 50 H 1.08995 * 109.58837 * 173.14337 * 28 19 6 51 51 H 1.09001 * 109.58898 * 293.56936 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7232 1.2483 5 6 3.5708 -0.6952 1.2658 6 6 4.1052 -1.4268 0.0306 7 1 3.8374 -2.4820 0.0865 8 6 5.6272 -1.2835 -0.0319 9 7 6.1341 -1.9724 -1.2214 10 6 7.4560 -1.9797 -1.4838 11 8 8.2260 -1.4157 -0.7354 12 6 7.9776 -2.6888 -2.7070 13 6 7.6129 -4.1450 -2.6353 14 6 7.9723 -4.9002 -1.6099 15 6 8.7190 -4.3887 -0.4745 16 6 9.7262 -3.5240 -0.5464 17 6 10.2473 -2.9463 -1.7723 18 6 9.4726 -2.5484 -2.7681 19 7 3.5045 -0.8292 -1.1697 20 6 4.2935 -0.3785 -2.1941 21 1 5.2703 0.0311 -1.9835 22 6 3.8377 -0.4481 -3.5035 23 7 2.8942 -1.3070 -3.8271 24 14 4.5635 0.6769 -4.8062 25 1 3.7809 1.9376 -4.8632 26 1 5.9750 0.9855 -4.4631 27 1 4.5117 0.0018 -6.1279 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5152 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1313 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8892 34 1 1.6797 1.9557 0.8907 35 1 1.6967 -1.7574 1.2352 36 1 1.6582 -0.2246 2.1388 37 1 3.9335 -1.1898 2.1669 38 1 3.9164 0.3385 1.2542 39 1 5.8909 -0.2272 -0.0839 40 1 6.0707 -1.7253 0.8605 41 1 5.5184 -2.4238 -1.8197 42 1 7.5344 -2.2470 -3.5995 43 1 7.0436 -4.5859 -3.4403 44 1 7.6978 -5.9447 -1.6177 45 1 8.4337 -4.7391 0.5065 46 1 10.1940 -3.2277 0.3809 47 1 11.3167 -2.8358 -1.8758 48 1 9.9255 -2.1125 -3.6463 49 1 2.5736 -1.9453 -3.1710 50 1 1.7646 -0.1496 -2.1346 51 1 1.6019 -1.7149 -1.2976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089649018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:30 Heat of formation + Delta-G solvation = 15.628708 kcal Electronic energy + Delta-G solvation = -30486.532821 eV Core-core repulsion = 26772.471856 eV Total energy + Delta-G solvation = -3714.060965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.38645 -40.35562 -38.18841 -36.57596 -35.20336 -33.99367 -33.17911 -32.90987 -31.54850 -29.09846 -28.11356 -27.31665 -27.13239 -24.87678 -24.44634 -23.78402 -21.87720 -21.76498 -19.75846 -19.45448 -18.69895 -18.44507 -18.09071 -17.30150 -17.01003 -16.59784 -16.03060 -15.64774 -15.55165 -15.33927 -15.10864 -15.05152 -14.83348 -14.48330 -14.46219 -13.84657 -13.63467 -13.47884 -13.38922 -13.23954 -12.94962 -12.85435 -12.79563 -12.67916 -12.54054 -12.32948 -12.23726 -11.95793 -11.83920 -11.71874 -11.63540 -11.37119 -11.14076 -11.08443 -10.89726 -10.71765 -10.38792 -10.15871 -9.75280 -9.09035 -8.72891 -8.02080 -5.27530 0.35644 1.12361 1.58341 1.60405 1.78159 1.82233 2.30852 2.56156 2.66466 3.32526 3.52624 3.83936 3.91714 3.91895 3.94995 4.02575 4.09050 4.16271 4.22365 4.24027 4.33873 4.39804 4.44440 4.54081 4.58900 4.71020 4.76660 4.79773 4.83775 4.88180 4.97378 5.00530 5.00982 5.05549 5.06001 5.08638 5.14563 5.24485 5.28657 5.42869 5.48109 5.55075 5.57436 5.65610 5.71515 5.74770 5.83885 5.87040 5.97185 6.08487 6.55636 6.83020 7.17927 7.46970 7.89477 8.37019 9.17618 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004651 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.175713 B = 6018.784350 C = 7207.444602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.164 3.836 7 H 0.026 0.974 8 C 0.149 3.851 9 N -0.690 5.690 10 C 0.519 3.481 11 O -0.580 6.580 12 C -0.054 4.054 13 C -0.142 4.142 14 C -0.116 4.116 15 C -0.154 4.154 16 C -0.086 4.086 17 C -0.114 4.114 18 C -0.134 4.134 19 N -0.600 5.600 20 C -0.315 4.315 21 H 0.045 0.955 22 C -0.058 4.058 23 N -0.942 5.942 24 Si 1.089 2.911 25 H -0.295 1.295 26 H -0.284 1.284 27 H -0.293 1.293 28 C 0.177 3.823 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.407 0.593 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.258 0.742 50 H 0.036 0.964 51 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -4.683 7.414 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.175 4.175 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.058 3.942 7 H 0.044 0.956 8 C 0.024 3.976 9 N -0.338 5.338 10 C 0.306 3.694 11 O -0.461 6.461 12 C -0.075 4.075 13 C -0.160 4.160 14 C -0.134 4.134 15 C -0.172 4.172 16 C -0.104 4.104 17 C -0.132 4.132 18 C -0.152 4.152 19 N -0.325 5.325 20 C -0.446 4.446 21 H 0.062 0.938 22 C -0.256 4.256 23 N -0.584 5.584 24 Si 0.918 3.082 25 H -0.223 1.223 26 H -0.210 1.210 27 H -0.219 1.219 28 C 0.052 3.948 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.243 0.757 42 H 0.121 0.879 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 5.424 -3.816 6.360 9.188 hybrid contribution -0.304 -0.428 0.894 1.037 sum 5.120 -4.244 7.254 9.841 Atomic orbital electron populations 1.21735 0.93919 1.01529 1.01634 1.20977 0.95461 0.95940 0.96373 1.21626 1.00717 0.95145 1.00021 1.21383 0.94675 0.99815 0.96885 1.21944 0.96542 1.00740 0.97173 1.20818 0.90373 0.94763 0.88266 0.95599 1.21070 0.93564 0.95836 0.87096 1.45889 1.06940 1.54087 1.26899 1.20653 0.82130 0.79809 0.86852 1.90590 1.57038 1.47593 1.50917 1.19272 0.95655 0.95271 0.97350 1.23032 1.00497 0.92886 0.99624 1.21294 0.98242 1.00436 0.93401 1.21154 0.96971 1.00624 0.98421 1.21148 0.97009 0.94654 0.97625 1.21227 1.00278 0.98812 0.92893 1.22931 0.92077 1.00340 0.99860 1.44200 1.01275 1.70190 1.16790 1.19853 1.01301 1.36414 0.86986 0.93784 1.26415 1.00118 1.00688 0.98415 1.70834 1.32494 1.18139 1.36930 0.83139 0.75237 0.75017 0.74814 1.22280 1.21011 1.21946 1.20693 0.83537 0.95142 0.95462 0.91060 0.93874 0.92852 0.93688 0.95129 0.91989 0.92642 0.90625 0.90485 0.92352 0.94441 0.91994 0.75735 0.87876 0.84745 0.84439 0.86718 0.87088 0.84601 0.84655 0.93130 0.94515 0.98263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.48 71.98 0.61 -3.10 16 2 C -0.09 -2.87 0.77 -52.25 -0.04 -2.91 16 3 C -0.12 -4.00 7.98 71.98 0.57 -3.43 16 4 C -0.09 -2.60 4.71 30.62 0.14 -2.45 16 5 C -0.12 -3.84 5.03 30.67 0.15 -3.69 16 6 C 0.16 6.08 3.01 44.97 0.14 6.22 16 7 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 8 C 0.15 5.66 4.43 86.38 0.38 6.05 16 9 N -0.69 -26.77 3.76 -463.05 -1.74 -28.51 16 10 C 0.52 19.77 5.48 87.66 0.48 20.25 16 11 O -0.58 -24.62 13.67 -3.05 -0.04 -24.66 16 12 C -0.05 -1.74 2.89 -13.29 -0.04 -1.78 16 13 C -0.14 -3.94 8.89 24.48 0.22 -3.73 16 14 C -0.12 -3.01 9.58 22.98 0.22 -2.79 16 15 C -0.15 -4.22 8.53 22.89 0.20 -4.03 16 16 C -0.09 -2.46 7.35 22.89 0.17 -2.29 16 17 C -0.11 -3.13 9.09 22.99 0.21 -2.92 16 18 C -0.13 -3.85 8.78 24.49 0.21 -3.63 16 19 N -0.60 -26.25 2.23 -676.07 -1.50 -27.75 16 20 C -0.32 -15.55 6.81 84.03 0.57 -14.98 16 21 H 0.04 2.33 5.98 -2.91 -0.02 2.31 16 22 C -0.06 -3.02 4.73 84.86 0.40 -2.62 16 23 N -0.94 -52.48 12.57 21.65 0.27 -52.21 16 24 Si 1.09 49.81 29.97 68.60 2.06 51.86 16 25 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 28 C 0.18 7.60 3.34 86.22 0.29 7.89 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.72 5.97 -2.39 -0.01 1.70 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.92 6.34 -2.39 -0.02 1.90 16 39 H 0.04 1.61 7.42 -2.39 -0.02 1.60 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.41 16.75 7.27 -92.71 -0.67 16.07 16 42 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.11 2.89 8.06 -2.91 -0.02 2.86 16 46 H 0.11 3.01 8.06 -2.91 -0.02 2.98 16 47 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 48 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 49 H 0.26 14.57 6.68 -92.71 -0.62 13.95 16 50 H 0.04 1.85 6.59 -2.39 -0.02 1.83 16 51 H 0.00 -0.03 7.82 -2.39 -0.02 -0.04 16 Total: -1.00 -60.37 385.39 4.31 -56.06 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: 0.37 Total: 39.15 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.89 Total: -13.94 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -2.97 Total: -108.47 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.86 kcal Total: -60.37 4.31 -56.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089649018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -60.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds